mRNA_L-elsbetiae_contig5328.13494.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5328.13494.1
Unique NamemRNA_L-elsbetiae_contig5328.13494.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5328.13494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5328contigL-elsbetiae_contig5328:1879..2682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size342
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816552.615347-CDS-L-elsbetiae_contig5328:1879..21241622816552.615347-CDS-L-elsbetiae_contig5328:1879..2124Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5328 1880..2124 -
1691683642.3410778-CDS-L-elsbetiae_contig5328:1879..21241691683642.3410778-CDS-L-elsbetiae_contig5328:1879..2124Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5328 1880..2124 -
1622816552.626999-CDS-L-elsbetiae_contig5328:2588..26821622816552.626999-CDS-L-elsbetiae_contig5328:2588..2682Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5328 2589..2682 -
1691683642.3505685-CDS-L-elsbetiae_contig5328:2588..26821691683642.3505685-CDS-L-elsbetiae_contig5328:2588..2682Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5328 2589..2682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5328.13494.1prot_L-elsbetiae_contig5328.13494.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5328 1880..2682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5328.13494.1

>prot_L-elsbetiae_contig5328.13494.1 ID=prot_L-elsbetiae_contig5328.13494.1|Name=mRNA_L-elsbetiae_contig5328.13494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
EVTACCWDTNTPGVMGLCGADGSFVVANHDRAPETTTATSSYAVYFNTVP
VHLWGRRRRYHRGGGDDDDDSDSDRHGHSAQPLPAASAPGPAPAPARRVP
QPWSSVSFVPGHP
back to top

mRNA from alignment at L-elsbetiae_contig5328:1879..2682-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5328.13494.1 ID=mRNA_L-elsbetiae_contig5328.13494.1|Name=mRNA_L-elsbetiae_contig5328.13494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig5328:1879..2682- (Laminarionema elsbetiae ELsaHSoW15)
GAAGTGACCGCGTGCTGTTGGGACACCAACACCCCAGGCGTGATGGGTCT
CTGCGGTGCCGATGGCTCGTTCGTCGTCGCGAACCACGATCGAGGTGCGT
GTAATTTAGGTTGGTGCGATGTAGCAGGGGCGTCGTGTGCGACCTGTCGT
GTGCGTAAATTAATTTACTTGCGTCTCCCCTGCAGCCGCTGAGCTTCGGC
TTCTGTCGCACAAGTATGTATGTAGCACCTCGGAGTACGTGCTTGCGACA
CAGCCGAATACACGCGATGCAGATGGCATTTTGTAGAGTCGAGTTTTCAG
CCGTGCGGTGTGGGGTTAAGCAAGCTACAACGTAACCCCCCATTCCCGCG
CATCCTTACAGTAGGTTACACCAGCCTGTGGCACTTGCTGCCATGCACTC
AAGCTATGCATGCAAGTACTGCTCAACTCGAACGCCCATAAACGGCTGTG
CCAGTAGTGCCCTGGTCGATCAACTCGAGGGCAAGAGCTGAACATGACGC
GGCATGGCGTAACATGGCGTCACTTTGCCTTCCTTGCCTCGCCTTGCCTC
CCCGCCAGCCCCAGAAACCACCACCGCCACAAGCAGCTACGCGGTCTACT
TCAACACCGTTCCCGTGCACCTCTGGGGCCGCCGCCGCCGGTACCACCGC
GGTGGCGGCGACGATGACGACGACAGCGACAGCGACAGACACGGCCACAG
CGCGCAACCGCTTCCCGCGGCCTCCGCCCCAGGCCCAGCCCCAGCCCCAG
CTCGACGAGTGCCGCAGCCGTGGTCCAGCGTATCCTTCGTGCCCGGCCAC
CCGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5328:1879..2682-

>mRNA_L-elsbetiae_contig5328.13494.1 ID=mRNA_L-elsbetiae_contig5328.13494.1|Name=mRNA_L-elsbetiae_contig5328.13494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig5328:1879..2682- (Laminarionema elsbetiae ELsaHSoW15)
GAAGTGACCGCGTGCTGTTGGGACACCAACACCCCAGGCGTGATGGGTCT
CTGCGGTGCCGATGGCTCGTTCGTCGTCGCGAACCACGATCGAGGAAGTG
ACCGCGTGCTGTTGGGACACCAACACCCCAGGCGTGATGGGTCTCTGCGG
TGCCGATGGCTCGTTCGTCGTCGCGAACCACGATCGAGCCCCAGAAACCA
CCACCGCCACAAGCAGCTACGCGGTCTACTTCAACACCGTTCCCGTGCAC
CTCTGGGGCCGCCGCCGCCGGTACCACCGCGGTGGCGGCGACGATGACGA
CGACAGCGACAGCGACAGACACGGCCACAGCGCGCAACCGCTTCCCGCGG
CCTCCGCCCCAGGCCCAGCCCCAGCCCCAGCTCGACGAGTGCCGCAGCCG
TGGTCCAGCGTATCCTTCGTGCCCGGCCACCCGCCCCAGAAACCACCACC
GCCACAAGCAGCTACGCGGTCTACTTCAACACCGTTCCCGTGCACCTCTG
GGGCCGCCGCCGCCGGTACCACCGCGGTGGCGGCGACGATGACGACGACA
GCGACAGCGACAGACACGGCCACAGCGCGCAACCGCTTCCCGCGGCCTCC
GCCCCAGGCCCAGCCCCAGCCCCAGCTCGACGAGTGCCGCAGCCGTGGTC
CAGCGTATCCTTCGTGCCCGGCCACCCG
back to top