mRNA_L-elsbetiae_contig5326.13489.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5326.13489.1
Unique NamemRNA_L-elsbetiae_contig5326.13489.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5326.13489.1 vs. uniprot
Match: D8LR00_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR00_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 9.320e-46
Identity = 104/120 (86.67%), Postives = 111/120 (92.50%), Query Frame = 1 
Query:    1 LLAGAGASGAAAVTDVEMEARKIKAGILEIERKRGLVIAERQEKEMQRVVENEQRMAELHKKINRVEEADAKRRAEHDLKVAQQRAAAADKRAKKEIEKHEREKQEDEQRKEMIKRTAEA 360
            LLAGA A+ A   TDVE+EAR+IKAGILEIERKRGLVIAERQEKEMQRVVENEQRMA+LHKKI RVEEADAKRRAEHD +VAQQRAAAA+KRAKKE+EKHEREK EDEQRKEMIKR AEA
Sbjct:  104 LLAGATAASA---TDVELEARRIKAGILEIERKRGLVIAERQEKEMQRVVENEQRMADLHKKILRVEEADAKRRAEHDQRVAQQRAAAAEKRAKKEMEKHEREKMEDEQRKEMIKRAAEA 220
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BLAST of mRNA_L-elsbetiae_contig5326.13489.1 vs. uniprot
Match: A0A6H5J6Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Z0_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.990e-26
Identity = 66/75 (88.00%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:  136 MQRVVENEQRMAELHKKINRVEEADAKRRAEHDLKVAQQRAAAADKRAKKEIEKHEREKQEDEQRKEMIKRTAEA 360
            MQR+VENEQRMA+LHKKI RVEEADAKRRAEHD +VAQQRAAAA+KRAKKE+EKHEREK EDEQRKEMIKR AEA
Sbjct:    1 MQRLVENEQRMADLHKKILRVEEADAKRRAEHDQRVAQQRAAAAEKRAKKEMEKHEREKVEDEQRKEMIKRAAEA 75
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BLAST of mRNA_L-elsbetiae_contig5326.13489.1 vs. uniprot
Match: A0A835Z042_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z042_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 8.780e-11
Identity = 42/83 (50.60%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:   43 DVEMEARKIKAGILEIERKRGLVIAERQEKEMQRVVENEQRMAELHKKINRVEEADAKRRAEHDLKVAQQRAAAADKRAKKEI 291
            D+  EA K++AGILE+ERKR   + +RQEKE+ R ++ E R AEL  KI   ++ DA+RR +H+  VA QR AAADKR ++E+
Sbjct:  127 DMAAEAEKVRAGILELERKRTQSVKKRQEKEVARALDAEARFAELQAKILHSQDEDARRRRDHEDAVAAQRGAAADKRRQREL 209
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5326.13489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LR00_ECTSI9.320e-4686.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J6Z0_9PHAE1.990e-2688.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z042_9STRA8.780e-1150.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5326contigL-elsbetiae_contig5326:4936..7335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.2
Seed ortholog evalue4.8e-39
Seed eggNOG ortholog2880.D8LR00
Hectar predicted targeting categoryother localisation
EggNOG OGs29280@1,2R94D@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size360
Cds size360
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5326.13489.1prot_L-elsbetiae_contig5326.13489.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5326 4936..7335 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816552.2632904-CDS-L-elsbetiae_contig5326:4935..50251622816552.2632904-CDS-L-elsbetiae_contig5326:4935..5025Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5326 4936..5025 +
1691683642.075869-CDS-L-elsbetiae_contig5326:4935..50251691683642.075869-CDS-L-elsbetiae_contig5326:4935..5025Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5326 4936..5025 +
1622816552.2744617-CDS-L-elsbetiae_contig5326:5671..57851622816552.2744617-CDS-L-elsbetiae_contig5326:5671..5785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5326 5672..5785 +
1691683642.0872865-CDS-L-elsbetiae_contig5326:5671..57851691683642.0872865-CDS-L-elsbetiae_contig5326:5671..5785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5326 5672..5785 +
1622816552.2852604-CDS-L-elsbetiae_contig5326:6458..65831622816552.2852604-CDS-L-elsbetiae_contig5326:6458..6583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5326 6459..6583 +
1691683642.1028175-CDS-L-elsbetiae_contig5326:6458..65831691683642.1028175-CDS-L-elsbetiae_contig5326:6458..6583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5326 6459..6583 +
1622816552.2967186-CDS-L-elsbetiae_contig5326:7304..73351622816552.2967186-CDS-L-elsbetiae_contig5326:7304..7335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5326 7305..7335 +
1691683642.1140826-CDS-L-elsbetiae_contig5326:7304..73351691683642.1140826-CDS-L-elsbetiae_contig5326:7304..7335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5326 7305..7335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5326.13489.1

>prot_L-elsbetiae_contig5326.13489.1 ID=prot_L-elsbetiae_contig5326.13489.1|Name=mRNA_L-elsbetiae_contig5326.13489.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
LLAGAGASGAAAVTDVEMEARKIKAGILEIERKRGLVIAERQEKEMQRVV
ENEQRMAELHKKINRVEEADAKRRAEHDLKVAQQRAAAADKRAKKEIEKH
EREKQEDEQRKEMIKRTAEA
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mRNA from alignment at L-elsbetiae_contig5326:4936..7335+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5326.13489.1 ID=mRNA_L-elsbetiae_contig5326.13489.1|Name=mRNA_L-elsbetiae_contig5326.13489.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2400bp|location=Sequence derived from alignment at L-elsbetiae_contig5326:4936..7335+ (Laminarionema elsbetiae ELsaHSoW15)
TTGCTGGCTGGAGCAGGGGCTTCAGGGGCGGCCGCTGTGACCGACGTGGA
GATGGAAGCCAGGAAAATCAAAGCGGGAATCCTGGAGATTGTGAGTTTGG
TCGGCACAGTTTTGGATCCTCTCTCTTGGCTTCTTGTTGTTCTGCTACCG
GCAACGATATATCTAGGCACATATGTAGGTGCTCTCTCTGTTGTTGGTCA
GCCGTTGCCGCATATGGTTGAGTAGCCACCGCTGAAGGTTATTTCATTTC
CGTGATATATGTAGAGTATCATAATCTTTCCCGATCAGCTTGCCCCCGAC
ATGTGTGCTTGAGTGCAATAGCTGAGTTCTTGTTTGCGAGACCCCCACTT
GCCCGTTCTTTCCTTGACATGAAAACAACATTTTGGATATTTTAGTTCCG
TTGCATGCCTATCTAGTCTCGATAAAGAGATTGACTGCTGTTGCACGCAA
AACGCCACGCACATGCATATGCATGTTCTTCGAAGTAGACCAGTACGGTT
GCGGACTAACGGCTCAAAGCTCTTGTACTGTATGTAGCCACCCACCCACG
AATCACCACAGGTTTGTTGCTCAGAATAAGTGTGGCCCAAGCAGCCGAGT
CCAAGCAACATCTGAGGTCGAGATTTATCTTATTCGCCAATCTGAGGCGC
GGGGTGCTTGGCTTTATTCTAGCGTGTGGACGGGCCTCTACATACTATTG
AAGCACATGCGTACCTAACCTTGGACCATTCTGCAGGAGCGCAAGCGAGG
GCTCGTGATCGCGGAGCGGCAGGAGAAGGAGATGCAGCGGGTCGTGGAGA
ACGAGCAGAGGATGGCCGAGCTTCACAAGAAGATCAACCGGGTGGAGGAG
GTGCGGGGTATTTTTAGTCGGAAAAAGCGGACTAGATCTGGTCTAGACTA
TTCGTCACTCTCGAAAAACTCTTCGTATGTACACGCCGCCTCCCTTTTCT
CCAGACCTGCAGTATGTATGTATGTATGTATGTATGTAGGGGCACGGGGC
ACGGGGCCCTCTCCTGTGGTCCTTCTCCTGCTGCAGAGGGTGGGGCATGC
GAAAGGAGTTTGACTGACTGAGCGTCATATTGTCGCAGAAGGTGACGGGG
ATGGAAGCTTTGTTCGTCCGAAGTCGCGGACGAACAAAGGAACGCACGAG
AAGATCTGATTGTGCCTACATACCACATCGGCCGACGAACGGCGCACGTG
GTGTGAACAGCACCCCGAATAATCCTGTCTTCTGGTCCCTCCTTCCTGTC
CACATCCTTCGCATCTCCGCAGACGCCCCCACTGATAGTCTATTCGATTC
CTGATAGTCTATTCGATTCCTCCTCTCCCACTCCTCGGGGCCCGCCCGCA
GATGCACGCCGTCGAGTGAAAGATCACCACAAATCTCGGCCGGTCGCATC
TGGTCAACCAGCCCCCCCCCCCCCCCTCCAAAGGCATACTGCCTCCCGCG
CGACGACAAAGGCTTTCCGATCCGCCGCCCGTGAAACAAAAAAAAACACC
GCTGATCCTCGCTCTGGTGGCAGGCGGACGCCAAGCGGCGAGCCGAGCAC
GACCTGAAGGTGGCGCAGCAGCGGGCGGCCGCGGCAGACAAGCGGGCCAA
GAAGGAGATCGAAAAACACGAGCGGGAGAAGCAGGAGGACGAGCAGAGGT
ATGTAAAAGGCCGAATGGACGCGACGAGTGTGCGAACAGCTGTCGCGGCG
GCGTGAAAAGGCGAGGGAGGTGTTGTGCTGGCCGACCGCGTGCTGGCTCT
TCGGTATTTTGCATTGGCCGGGTGGCGGTCGTGGTGGCTGCCGTGGCTGT
ACCGTAGGTGACATAAAATAAGACACCCCTTGGACCGATATTGAAAGCTT
GGTTACTCCGCAACGGTTACGATTCTAACCACAAACGCCGGATTGTCGGA
AAGCTCTCGACGAGATCTTTCCAACGCCGCCCTTTTCTGGACTGACGCTC
TGCTTGCTGTGGAGTACTTGAACTTTGAAAATCGGTCCAGGGGGTGCCTT
ATCTTATGTCACCTACGGTAGCAAGGGGGGAACGAACAATGGCGCATGTA
GGTCGAAGTATGAGTTGGTCGGAGGTGGCCGCAAGAGGGGTCGGCGAAGG
GCCTGCTACGGTATTACGTGGTATGGATAAATGACGGCTTACATTACACA
GCAGAAGAAGCCCCGCGAATTCTTGGGTTTTCCCGTCGAGAACCCTATTT
GTACATGCATGAACTAAAAAAAACTCTGGCATCCATTGAACACTAAAGCC
CTCCACGTCCTAATTTAACCCTTACATTGATGCGACAAATCGCGGGTGAA
ACCAACGGCGAAACTTACACGAAACGCTCGAAACGCTCGCCCCGTGTACA
CGCGGGCTTGCGTTCCCAGGAAGGAGATGATCAAACGCACCGCCGAGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5326:4936..7335+

>mRNA_L-elsbetiae_contig5326.13489.1 ID=mRNA_L-elsbetiae_contig5326.13489.1|Name=mRNA_L-elsbetiae_contig5326.13489.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig5326:4936..7335+ (Laminarionema elsbetiae ELsaHSoW15)
TTGCTGGCTGGAGCAGGGGCTTCAGGGGCGGCCGCTGTGACCGACGTGGA
GATGGAAGCCAGGAAAATCAAAGCGGGAATCCTGGAGATTTTGCTGGCTG
GAGCAGGGGCTTCAGGGGCGGCCGCTGTGACCGACGTGGAGATGGAAGCC
AGGAAAATCAAAGCGGGAATCCTGGAGATTGAGCGCAAGCGAGGGCTCGT
GATCGCGGAGCGGCAGGAGAAGGAGATGCAGCGGGTCGTGGAGAACGAGC
AGAGGATGGCCGAGCTTCACAAGAAGATCAACCGGGTGGAGGAGGAGCGC
AAGCGAGGGCTCGTGATCGCGGAGCGGCAGGAGAAGGAGATGCAGCGGGT
CGTGGAGAACGAGCAGAGGATGGCCGAGCTTCACAAGAAGATCAACCGGG
TGGAGGAGGCGGACGCCAAGCGGCGAGCCGAGCACGACCTGAAGGTGGCG
CAGCAGCGGGCGGCCGCGGCAGACAAGCGGGCCAAGAAGGAGATCGAAAA
ACACGAGCGGGAGAAGCAGGAGGACGAGCAGAGGCGGACGCCAAGCGGCG
AGCCGAGCACGACCTGAAGGTGGCGCAGCAGCGGGCGGCCGCGGCAGACA
AGCGGGCCAAGAAGGAGATCGAAAAACACGAGCGGGAGAAGCAGGAGGAC
GAGCAGAGGAAGGAGATGATCAAACGCACCGCCGAGGCCGAAGGAGATGA
TCAAACGCACCGCCGAGGCC
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