mRNA_L-elsbetiae_contig5311.13476.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5311.13476.1
Unique NamemRNA_L-elsbetiae_contig5311.13476.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5311.13476.1 vs. uniprot
Match: D8LTD7_ECTSI (Flagellar associated protein, quinone reductase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTD7_ECTSI)

HSP 1 Score: 283 bits (725), Expect = 2.010e-89
Identity = 136/156 (87.18%), Postives = 145/156 (92.95%), Query Frame = 3 
Query:   39 HAPPKDESIPEVVVSDLAGADGILFGFPTRFGMIPAQMKAVLDATGGLWKAGGLIGKPAGVFCSTASQGGGQETTALTFLTQLTHHGMMFVPIGYSSPLLFNNDEVHGGSPYGAGTIADNDGSRMPSDLEKGVAKHQGSYFAGTCKALKAGRAAVA 506
            HAPPKDESIPEV V DL  ADGILFGFPTRFG +P QMK+VLDATGGLW++GGL+GKPAGVF STA+QGGGQET+ALTFLTQL HHGMMFVPIGYSSPLLFNNDEVHGGSPYGAGT+A  DGSRMPSDLEKGVAKHQGS+FAGTCKALKAGRAA A
Sbjct:   56 HAPPKDESIPEVDVKDLVNADGILFGFPTRFGTLPTQMKSVLDATGGLWQSGGLVGKPAGVFISTATQGGGQETSALTFLTQLAHHGMMFVPIGYSSPLLFNNDEVHGGSPYGAGTLAGGDGSRMPSDLEKGVAKHQGSFFAGTCKALKAGRAASA 211
[Close]
BLAST of mRNA_L-elsbetiae_contig5311.13476.1 vs. uniprot
Match: A0A835YJD4_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJD4_9STRA)

HSP 1 Score: 225 bits (574), Expect = 4.830e-67
Identity = 108/157 (68.79%), Postives = 127/157 (80.89%), Query Frame = 3 
Query:   27 KHQRHAPPKDESIPEVVVSDLAGADGILFGFPTRFGMIPAQMKAVLDATGGLWKAGGLIGKPAGVFCSTASQGGGQETTALTFLTQLTHHGMMFVPIGYSSPLLFNNDEVHGGSPYGAGTIADNDGSRMPSDLEKGVAKHQGSYFAGTCKALKAGRA 497
            + + HAPP+DESIP   V DL  ADG +FG  TRFGM  AQMK++ D+TG LW+AG L GKPAG+F ST +QGGGQETTALT++TQLTHHGM+FVP+GY++PLLFN DEVHGGSPYGAGT A  DGSR P+ LEK VAKHQG+YFAG   ALK G+A
Sbjct:   48 REKMHAPPQDESIPICNVKDLPEADGFIFGIATRFGMSNAQMKSLWDSTGSLWQAGALAGKPAGIFVSTGTQGGGQETTALTWVTQLTHHGMIFVPLGYTTPLLFNMDEVHGGSPYGAGTFAGPDGSRQPTQLEKDVAKHQGTYFAGVVTALKNGKA 204
[Close]
BLAST of mRNA_L-elsbetiae_contig5311.13476.1 vs. uniprot
Match: A0A835YWM1_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWM1_9STRA)

HSP 1 Score: 222 bits (565), Expect = 1.220e-65
Identity = 104/153 (67.97%), Postives = 126/153 (82.35%), Query Frame = 3 
Query:   39 HAPPKDESIPEVVVSDLAGADGILFGFPTRFGMIPAQMKAVLDATGGLWKAGGLIGKPAGVFCSTASQGGGQETTALTFLTQLTHHGMMFVPIGYSSPLLFNNDEVHGGSPYGAGTIADNDGSRMPSDLEKGVAKHQGSYFAGTCKALKAGRA 497
            HAPP DESIP   V+DLAGADGI+FG  TRFGM  AQ+K++ D+TGG+W+AG L+GKPAGVF STA+Q GGQET A+T+++QLTHHGM+FVP+GY++PLLF  DE+ GGSPYGAGT A  DGSRMPS LEK +A+HQG YFAG   AL+ G A
Sbjct:   52 HAPPADESIPLCTVADLAGADGIIFGLSTRFGMATAQLKSLWDSTGGMWQAGALVGKPAGVFVSTATQQGGQETAAVTWISQLTHHGMIFVPMGYTTPLLFGMDEIRGGSPYGAGTYAGADGSRMPSQLEKDIAQHQGKYFAGVATALRDGEA 204
[Close]
BLAST of mRNA_L-elsbetiae_contig5311.13476.1 vs. uniprot
Match: A0A817TQW6_9BILA (Hypothetical protein n=7 Tax=Rotaria TaxID=231623 RepID=A0A817TQW6_9BILA)

HSP 1 Score: 211 bits (538), Expect = 3.440e-61
Identity = 111/167 (66.47%), Postives = 122/167 (73.05%), Query Frame = 3 
Query:   39 HAPPKDESIPE----------VVVSD-LAGADGILFGFPTRFGMIPAQMKAVLDATGGLWKAGGLIGKPAGVFCSTASQGGGQETTALTFLTQLTHHGMMFVPIGYSSPLLFNNDEVHGGSPYGAGTIADNDGSRMPSDLEKGVAKHQGSYFAGTCKALKAGRAAVA 506
            HAP KD +IP           V V D L   DGILFGFPTRFG IPAQ+KAV DATGGLW  G L+GKP GVF ST SQGGGQETTALT LT   HHGM+FVPIGY+SPLL N DEVHGGS YGAGTIA ++GSR PS+LE  +A+HQGSYF     ALK GRAA +
Sbjct:   72 HAPDKDSTIPTISFVPGVANTVTVEDALVNCDGILFGFPTRFGGIPAQVKAVWDATGGLWMKGALVGKPIGVFFSTGSQGGGQETTALTSLTNYVHHGMLFVPIGYTSPLLGNIDEVHGGSAYGAGTIASSNGSRQPSELELKLAQHQGSYFTQVATALKVGRAAAS 238
[Close]
BLAST of mRNA_L-elsbetiae_contig5311.13476.1 vs. uniprot
Match: A0A7S3I3W6_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3I3W6_9SPIT)

HSP 1 Score: 205 bits (521), Expect = 3.800e-60
Identity = 97/132 (73.48%), Postives = 110/132 (83.33%), Query Frame = 3 
Query:   87 LAGADGILFGFPTRFGMIPAQMKAVLDATGGLWKAGGLIGKPAGVFCSTASQGGGQETTALTFLTQLTHHGMMFVPIGYSSPLLFNNDEVHGGSPYGAGTIADNDGSRMPSDLEKGVAKHQGSYFAGTCKAL 482
            L   DG LFG PTR+GM PAQMKA +D+TGGLW+ G L+GKPAGVF ST +Q GGQETTALTF+TQLTHHGM+FVPIGYS+  LFNNDEVHGGSPYGAGT+++ DGSRMPSDLEK +A HQG YFAG    L
Sbjct:    5 LTEFDGFLFGLPTRYGMAPAQMKAFIDSTGGLWQKGALVGKPAGVFFSTGTQNGGQETTALTFITQLTHHGMIFVPIGYSTTDLFNNDEVHGGSPYGAGTLSNADGSRMPSDLEKRIATHQGKYFAGVVTKL 136
[Close]
BLAST of mRNA_L-elsbetiae_contig5311.13476.1 vs. uniprot
Match: A0A813V5B2_9BILA (Hypothetical protein n=4 Tax=Adineta steineri TaxID=433720 RepID=A0A813V5B2_9BILA)

HSP 1 Score: 204 bits (518), Expect = 2.310e-58
Identity = 107/174 (61.49%), Postives = 121/174 (69.54%), Query Frame = 3 
Query:   39 HAPPKDESIPE----------VVVSD-LAGADGILFGFPTRFGMIPAQMKAVLDATGGLWKAGGLIGKPAGVFCSTASQGGGQETTALTFLTQLTHHGMMFVPIGYSSPLLFNNDEVHGGSPYGAGTIADNDGSRMPSDLEKGVAKHQGSYFAGTCKALKAGRAAVA*ITRLPP 527
            HAP KD++IP           V + D L   DGI+FGFPTRFG +PAQ+KAV DATGGLW  G LIGKP  VF ST +QGGGQETT LT LT   HHGM+FVPIGYSSPLL N DE+HGGS YG GT A +DGSR PSDLE  +A+HQGS+F     ALK GRAA+      PP
Sbjct:   60 HAPEKDKNIPTLSFGGEGENTVTIEDALVNCDGIVFGFPTRFGGMPAQVKAVWDATGGLWMKGALIGKPISVFFSTGTQGGGQETTVLTSLTNFIHHGMLFVPIGYSSPLLGNMDEIHGGSAYGIGTFAGHDGSRKPSDLELKIAEHQGSHFTQVATALKIGRAAMPPKEADPP 233
[Close]
BLAST of mRNA_L-elsbetiae_contig5311.13476.1 vs. uniprot
Match: A0A814FNY1_9BILA (Hypothetical protein n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A814FNY1_9BILA)

HSP 1 Score: 204 bits (518), Expect = 2.460e-58
Identity = 104/174 (59.77%), Postives = 122/174 (70.11%), Query Frame = 3 
Query:   39 HAPPKDESIPE----------VVVSD-LAGADGILFGFPTRFGMIPAQMKAVLDATGGLWKAGGLIGKPAGVFCSTASQGGGQETTALTFLTQLTHHGMMFVPIGYSSPLLFNNDEVHGGSPYGAGTIADNDGSRMPSDLEKGVAKHQGSYFAGTCKALKAGRAAVA*ITRLPP 527
            HAP KD+++P           V + D L   DGILFG+PTRFG +PAQ+KA+ DATGGLW  G L+GKP GVF ST +Q GGQETT LT LT   HHGM+FVPIGY+SPLL N DE+HGGS YGAGT A +DGSR P+DLE  +A+HQGSYF     ALK GRAA+      PP
Sbjct:   60 HAPEKDKTVPTISFAPGTENTVTLEDALVNCDGILFGYPTRFGGMPAQVKAIWDATGGLWMKGSLVGKPIGVFFSTGTQAGGQETTTLTSLTNFIHHGMLFVPIGYTSPLLANMDEIHGGSAYGAGTYAGSDGSRKPTDLELKIAEHQGSYFTQVATALKIGRAALPPKEANPP 233
[Close]
BLAST of mRNA_L-elsbetiae_contig5311.13476.1 vs. uniprot
Match: A0A818CBB6_9BILA (Hypothetical protein n=5 Tax=Rotaria socialis TaxID=392032 RepID=A0A818CBB6_9BILA)

HSP 1 Score: 204 bits (518), Expect = 3.800e-58
Identity = 103/171 (60.23%), Postives = 120/171 (70.18%), Query Frame = 3 
Query:   39 HAPPKDESIPEVVVSD-----------LAGADGILFGFPTRFGMIPAQMKAVLDATGGLWKAGGLIGKPAGVFCSTASQGGGQETTALTFLTQLTHHGMMFVPIGYSSPLLFNNDEVHGGSPYGAGTIADNDGSRMPSDLEKGVAKHQGSYFAGTCKALKAGRAAVA*ITR 518
            HAP KD+++P + + +           L   DGIL G PTRFG IPAQMKA+ DATGGLWK G L+GKP GVF ST + GGGQETT LT LT   HHGM+FVPIGYSSPLL N  E+HGGSPYGAGT +  DG+R PS LE  VA+HQG+ FA T  ALK GRAA +  T+
Sbjct:   72 HAPEKDKTVPTITLDEAGENTVGLEDALVNCDGILLGVPTRFGGIPAQMKALWDATGGLWKKGALVGKPIGVFISTGTPGGGQETTTLTSLTNFCHHGMIFVPIGYSSPLLMNLTEIHGGSPYGAGTFSAPDGTRQPSQLELQVAEHQGTLFAHTATALKVGRAATSDQTK 242
[Close]
BLAST of mRNA_L-elsbetiae_contig5311.13476.1 vs. uniprot
Match: A0A0G4F8J7_VITBC (Flavodoxin-like domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8J7_VITBC)

HSP 1 Score: 202 bits (514), Expect = 9.800e-58
Identity = 102/155 (65.81%), Postives = 117/155 (75.48%), Query Frame = 3 
Query:   42 APPKDESIPEVVVSDLAGADGILFGFPTRFGMIPAQMKAVLDATGGLWKAGGLIGKPAGVFCSTASQGGGQETTALTFLTQLTHHGMMFVPIGYS-SPLLFNNDEVHGGSPYGAGTIADNDGSRMPSDLEKGVAKHQGSYFAGTCKALKAGRAAV 503
            APPKD  IP V V  L  ADGILFG PTRFG + AQMKA+ DATGGLW+ G L+GKPAG+F STA+Q GGQETTALT LTQ THHGM+FVPIGY+   + F+  E+HGGS YGAGT A  DGSRMPS+ E  +AKHQG YF    KA+KAGR + 
Sbjct:   84 APPKDTDIPVVDVHTLPDADGILFGTPTRFGAMCAQMKAMWDATGGLWQGGKLVGKPAGIFFSTATQAGGQETTALTALTQFTHHGMIFVPIGYTLGEVQFDMSEIHGGSAYGAGTFAGADGSRMPSEKELALAKHQGKYFTNVTKAIKAGRQST 238
[Close]
BLAST of mRNA_L-elsbetiae_contig5311.13476.1 vs. uniprot
Match: A0A819XW50_9BILA (Hypothetical protein n=5 Tax=Rotaria TaxID=231623 RepID=A0A819XW50_9BILA)

HSP 1 Score: 202 bits (514), Expect = 1.760e-57
Identity = 104/167 (62.28%), Postives = 123/167 (73.65%), Query Frame = 3 
Query:   39 HAPPKDESIPE----------VVVSD-LAGADGILFGFPTRFGMIPAQMKAVLDATGGLWKAGGLIGKPAGVFCSTASQGGGQETTALTFLTQLTHHGMMFVPIGYSSPLLFNNDEVHGGSPYGAGTIADNDGSRMPSDLEKGVAKHQGSYFAGTCKALKAGRAAVA 506
            HAP KD++IP           V + D L   DGIL G PTRFG +PAQ+KA+ DATGGLW  GGL+GKP GVF ST++QGGGQETTALT LT   HHGM+FVPIGY+SPLL N +E+HGGS YGAGT A  DGSR PS+LE  +A+HQGS+F+    ALK GRAA+A
Sbjct:   79 HAPEKDKNIPTISMIPGVENTVTLEDALVNCDGILMGIPTRFGGMPAQVKAIWDATGGLWMKGGLVGKPIGVFFSTSTQGGGQETTALTALTNFVHHGMLFVPIGYTSPLLTNMNEIHGGSAYGAGTYASIDGSRTPSELELKLAEHQGSHFSQVVTALKLGRAALA 245
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5311.13476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTD7_ECTSI2.010e-8987.18Flagellar associated protein, quinone reductase-li... [more]
A0A835YJD4_9STRA4.830e-6768.79Flagellar associated protein n=1 Tax=Tribonema min... [more]
A0A835YWM1_9STRA1.220e-6567.97Flagellar associated protein n=1 Tax=Tribonema min... [more]
A0A817TQW6_9BILA3.440e-6166.47Hypothetical protein n=7 Tax=Rotaria TaxID=231623 ... [more]
A0A7S3I3W6_9SPIT3.800e-6073.48Hypothetical protein (Fragment) n=1 Tax=Favella eh... [more]
A0A813V5B2_9BILA2.310e-5861.49Hypothetical protein n=4 Tax=Adineta steineri TaxI... [more]
A0A814FNY1_9BILA2.460e-5859.77Hypothetical protein n=1 Tax=Rotaria sordida TaxID... [more]
A0A818CBB6_9BILA3.800e-5860.23Hypothetical protein n=5 Tax=Rotaria socialis TaxI... [more]
A0A0G4F8J7_VITBC9.800e-5865.81Flavodoxin-like domain-containing protein n=1 Tax=... [more]
A0A819XW50_9BILA1.760e-5762.28Hypothetical protein n=5 Tax=Rotaria TaxID=231623 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5311contigL-elsbetiae_contig5311:228..3780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score281.2
Seed ortholog evalue3.2e-73
Seed eggNOG ortholog2880.D8LTD7
Preferred namePST2
KEGG rclassRC00819
KEGG koko:K03809,ko:K14015
KEGG ReactionR02964,R03643,R03816
KEGG Pathwayko00130,ko01110,ko04141,map00130,map01110,map04141
KEGG ModuleM00400,M00403
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000785,GO:0000792,GO:0003674,GO:0003824,GO:0003955,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005739,GO:0005886,GO:0006091,GO:0006325,GO:0006342,GO:0006355,GO:0006996,GO:0008150,GO:0008152,GO:0009055,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010181,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016020,GO:0016043,GO:0016458,GO:0016491,GO:0016651,GO:0016655,GO:0019219,GO:0019222,GO:0022900,GO:0030466,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031934,GO:0032553,GO:0036094,GO:0040029,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0048037,GO:0048519,GO:0048523,GO:0050662,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0055114,GO:0060255,GO:0065007,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.NAD(P)H dehydrogenase (quinone) activity
EggNOG OGsCOG0655@1,KOG3135@2759
EC1.6.5.2
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Ec32 ortholog descriptionflagellar associated protein, quinone reductase-like protein
Ec32 orthologEc-02_005960.1
Exons4
Model size1712
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5311.13476.1prot_L-elsbetiae_contig5311.13476.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5311 236..2577 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816550.8523276-UTR-L-elsbetiae_contig5311:227..2351622816550.8523276-UTR-L-elsbetiae_contig5311:227..235Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5311 228..235 +
1691683641.120832-UTR-L-elsbetiae_contig5311:227..2351691683641.120832-UTR-L-elsbetiae_contig5311:227..235Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5311 228..235 +
1622816550.9093919-UTR-L-elsbetiae_contig5311:2577..37801622816550.9093919-UTR-L-elsbetiae_contig5311:2577..3780Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5311 2578..3780 +
1691683641.1784463-UTR-L-elsbetiae_contig5311:2577..37801691683641.1784463-UTR-L-elsbetiae_contig5311:2577..3780Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5311 2578..3780 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816550.8632615-CDS-L-elsbetiae_contig5311:235..3411622816550.8632615-CDS-L-elsbetiae_contig5311:235..341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5311 236..341 +
1691683641.1343615-CDS-L-elsbetiae_contig5311:235..3411691683641.1343615-CDS-L-elsbetiae_contig5311:235..341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5311 236..341 +
1622816550.8742523-CDS-L-elsbetiae_contig5311:1024..12631622816550.8742523-CDS-L-elsbetiae_contig5311:1024..1263Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5311 1025..1263 +
1691683641.1447713-CDS-L-elsbetiae_contig5311:1024..12631691683641.1447713-CDS-L-elsbetiae_contig5311:1024..1263Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5311 1025..1263 +
1622816550.8875155-CDS-L-elsbetiae_contig5311:1844..19231622816550.8875155-CDS-L-elsbetiae_contig5311:1844..1923Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5311 1845..1923 +
1691683641.1535802-CDS-L-elsbetiae_contig5311:1844..19231691683641.1535802-CDS-L-elsbetiae_contig5311:1844..1923Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5311 1845..1923 +
1622816550.8986912-CDS-L-elsbetiae_contig5311:2500..25771622816550.8986912-CDS-L-elsbetiae_contig5311:2500..2577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5311 2501..2577 +
1691683641.1656287-CDS-L-elsbetiae_contig5311:2500..25771691683641.1656287-CDS-L-elsbetiae_contig5311:2500..2577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5311 2501..2577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5311.13476.1

>prot_L-elsbetiae_contig5311.13476.1 ID=prot_L-elsbetiae_contig5311.13476.1|Name=mRNA_L-elsbetiae_contig5311.13476.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=167bp
MLRTGKKHQRHAPPKDESIPEVVVSDLAGADGILFGFPTRFGMIPAQMKA
VLDATGGLWKAGGLIGKPAGVFCSTASQGGGQETTALTFLTQLTHHGMMF
VPIGYSSPLLFNNDEVHGGSPYGAGTIADNDGSRMPSDLEKGVAKHQGSY
FAGTCKALKAGRAAVA*
back to top

mRNA from alignment at L-elsbetiae_contig5311:228..3780+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5311.13476.1 ID=mRNA_L-elsbetiae_contig5311.13476.1|Name=mRNA_L-elsbetiae_contig5311.13476.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3553bp|location=Sequence derived from alignment at L-elsbetiae_contig5311:228..3780+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCGCACATGCTACGTACGGGCAAAAAACACCAAAGGCACGCACCTCCA
AAGGACGAGTCGATCCCTGAAGTCGTCGTTAGTGACCTCGCCGGCGCAGA
TGGAATCCTGTTCGGTGAGAAACACGAAGCGAAGTAACAAGAGGATAGGA
CAAGTTGAAAAAATGCTGCCGGCGGGGGCAGGGGAGTGAGTGCCTTCGCT
ACCAGACCAGCTCTTCTCGAGACGTTCTATTATTGTGTTGTATTTGTAGG
GAACATGTGTAGATGCACACTGCTTGTAGATAATAAAAGGCGAACGTATC
CGGAGGCGGACGGACGCAGCAAGGCAAGACAGAAGGGGGAGATATTTAGT
AGCAGACCTGTTTTGCATGCCGGCATAAAACGCTTGTTACACAGCAGTAG
CACAGTAGTGTGTGACCCCGGTTGGGTCGTCTCGCTAGTCGAAGTGGAGT
ATGGGGACCAGTGGGGCAGACGACAAATATGCCAAAAATGGGAGGAGAAA
AGCAAAGAGTAGTACACAGTACCCGGCAGGAACATGAGCACACGTGGCAT
GATTACGTGAAAATAACAGCTGCTTTCGAGGTGTCCCTTGTTCGAGAGAA
TGGCTGAACAGGCCAGCGAGCCCTTCGCCGAAAAATCTCACCCCCAACCC
CGGCTCTGTAAATGGATATGGCAGCGACGGCGTTTTTTTTTTCTGCGGCG
AAACGGCGTCGCCGTGCAGACAGCTAGAAAAGTATCGCGACCGAAATACC
CGCTTCCCGTCCCCGGCCGTGCCCACGCTCTACGTACGCCGTCGAAGGGT
TCCCCACGCGGTTCGGGATGATACCCGCCCAGATGAAAGCCGTCTTGGAC
GCGACCGGCGGACTGTGGAAAGCCGGGGGGCTCATCGGCAAGCCCGCGGG
TGTCTTCTGCTCGACCGCGTCCCAGGGCGGTGGGCAGGAAACTACCGCTT
TGACCTTCCTGACCCAGCTCACGCACCACGGGATGATGTTCGTGCCGATC
GGCTACTCGAGCCCGCTGCTCTTCAACAACGACGAGGTATGCATTTATGT
GCCGTAGGTGACACAAGATACTACCACCCCCACCCTCCCTGGACAGACTT
TCAAAGCTCGAGTCCTCCCCAGCAAGAAGAGTACCAGTGCCGAAAGGGGG
TGGCGTTGGAGAAACCTAGTCGAGGGCTGTCCGAAAATAAATCTGTCGTT
TGGTGCTGGCACCCTCTTCGTTGCGGAGTAATCGAGCTTTGAAAATCTGT
CCGGGGGGGGGGGGTGTGTGGTAGCATCTTGTGCCACCTACATACGGTAC
ATAAATGCATGCATGCATACAGGAGCTGTTTTTGGTGCCTTGAAAGTTGA
AGTCGGGAGATGAAGATAGACGACTGACGATGGAGGGAGAGCTTTCACCC
CTGTCCCAGCCGTCGGCCCCCCTTTCCGGCCCCCGGCTGAACGACGAAGA
GATAGATGAATGCATAGATACACAACACGCGCGCGGCGGGAAGGAATGGG
ACGGAATTGAGTCGAAGCCAAGGCGGTGCTGAAACAACGTTGCTTGTCTG
CTTCCCTCGCGTGGCCGCCCTTCTCTTGTGTGTCCTCCATGTCGACGCAA
CACGATAATCTGTCAAGGTCCACGGTGGCAGCCCGTACGGCGCGGGAACC
ATCGCGGACAACGACGGGTCGAGGATGCCCAGCGACCTCGAAAAGGGTGC
GCGCCAATCAAGACTTGATTTTTTACAGGCTTGATGCTGAAGTTTTCTAT
GTAGTTCCATGCAAGCACCTGCATCATCGCTAAAGTCTTTATGCGTTGCG
GCTATGGTCTATATTGTGTGGCATACTTGTAATCTAAAACTACAACATAC
GCAAGTAACAGCGAGCACTGTCACCCCTTCGGACCACCGCGTCCGTCGAT
CTCATACATACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCGCCGCGCCCTGGCTCGTTCCGGTGCCTGCCGG
CCCCTCGTCGCCCCCCCCCCCCCNNNNNNNNNNACCACAAGCAAAAGCCC
GACCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCAATTCCAACACCCCCC
CCCCCCCCCCCCCCTCCCACGCCTTGTGCTTGAACCCCCTACATAAGAGA
GTGGTCACAGGTTGTTGTTCTGCGGCCGTGGGGACTTGCGATGACACCGC
CCCACCCCCCACCTGCCCCTCTTCTCACTGCGGTAAAAAAACTCTCGTTT
CGCGTTCTCTTCTTTCTGTGCAGGGGTGGCCAAACACCAGGGCTCTTACT
TCGCAGGAACCTGCAAGGCTCTCAAGGCAGGCCGTGCCGCCGTCGCCTAA
ATAACCCGACTGCCTCCATTTTTTTGTGGGCAGCGTAGAAATCGGGCTTT
TCATGAATTCAGGCACATGGCGGTGCGTGTGCGCTGCATGCAACAATAGT
GGGAACGGTTAGTGCTGGGGCTTGAGCGTGATGTTTTTATCCCGGGCATG
TATGTCGGTATAAGTCTTAAGGACTTGCCGATGTAGTGAGCAAGTGGCTT
CAATTTGTCGGTATTAGTGTTGGGGGCTTGCCGAATCGTAGTGAACAAGT
GGCTTCATATGTCGGTATTAGTCTATTTGCCGAATCGTGAGAATAGAGTG
GATGCGTGTGTTTTTCCGGACCTCATTTGACCATGTTTGTAAGAAAAAAA
TCTTGAAAATAAAAATCTTGGTGTATTTTGACCTTTGCGGCCACGTTTCC
TCGCCAAGAGCTCGGAATCAGATTTTCGCCTCTCAACATCCAGAGGTCTA
CAGATCAGCTGTCCAATCTGGCACACTCCAGGTTTGACTGTTGGCCTCGG
AGCAAGATTTTGCTGAATCTGGCCAAGATCTGGCCAAAAAGTCGTGTTCG
CGCAAATATTCAGCCAAAATATGCAAAATTTGTAAATCTTGGACAAATCT
AGCAAAATCTTGCTCCGAGGCCCACAACCAAACCCGGAATGTGCCAGATT
GGACAGCTGATCCGTAAACCTCTGGAAGAGAGCTTTGAAAGTCCCTGAAT
AGCGAAAATCTGATTCCGAGCTCGTGGCGAAGAAACGTGGCCACAAAGGT
CAAAATACACTAGATTTTTATTTTTAAGATTCGTTCCCTATAAACATGGG
TGTAAGCTCTGAAAATTTGCACAGACTTTCCATAGGTGACGCGGATTACG
AAAATATTCCTCATTTTGTATTTGGCAATTCTGGTGGTGGGTTATTGGCG
ATTAAGTTGGTGAATATCGGGGAAATCGCCTCTGCGGGCCCCCCAAGGAA
ATTTAGAAATTTCAACCCTGCCCGAATCATATGAATTTTTCAGGGATACT
GTATGTCGCATTGCTGAACACGATTCCGAAGTCAGAAGTGAAATACAAAG
ATTTCTGCTCTACTCATGGCCCTTCAAAGTATATGCGAGAAATTTGCGAA
AACTTGGGATTATACTGAAGTTACTATGAAATATCCCCTCCCCGGGCATA
CGTTCCACTTGTTGATATAAGCTCTGAAAACTTCATCTCTGGGTAATTTT
GGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5311:228..3780+

>mRNA_L-elsbetiae_contig5311.13476.1 ID=mRNA_L-elsbetiae_contig5311.13476.1|Name=mRNA_L-elsbetiae_contig5311.13476.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig5311:228..3780+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTACGTACGGGCAAAAAACACCAAAGGCACGCACCTCCAAAGGACGA
GTCGATCCCTGAAGTCGTCGTTAGTGACCTCGCCGGCGCAGATGGAATCC
TGTTCGATGCTACGTACGGGCAAAAAACACCAAAGGCACGCACCTCCAAA
GGACGAGTCGATCCCTGAAGTCGTCGTTAGTGACCTCGCCGGCGCAGATG
GAATCCTGTTCGGGTTCCCCACGCGGTTCGGGATGATACCCGCCCAGATG
AAAGCCGTCTTGGACGCGACCGGCGGACTGTGGAAAGCCGGGGGGCTCAT
CGGCAAGCCCGCGGGTGTCTTCTGCTCGACCGCGTCCCAGGGCGGTGGGC
AGGAAACTACCGCTTTGACCTTCCTGACCCAGCTCACGCACCACGGGATG
ATGTTCGTGCCGATCGGCTACTCGAGCCCGCTGCTCTTCAACAACGACGA
GGGTTCCCCACGCGGTTCGGGATGATACCCGCCCAGATGAAAGCCGTCTT
GGACGCGACCGGCGGACTGTGGAAAGCCGGGGGGCTCATCGGCAAGCCCG
CGGGTGTCTTCTGCTCGACCGCGTCCCAGGGCGGTGGGCAGGAAACTACC
GCTTTGACCTTCCTGACCCAGCTCACGCACCACGGGATGATGTTCGTGCC
GATCGGCTACTCGAGCCCGCTGCTCTTCAACAACGACGAGGTCCACGGTG
GCAGCCCGTACGGCGCGGGAACCATCGCGGACAACGACGGGTCGAGGATG
CCCAGCGACCTCGAAAAGGGTCCACGGTGGCAGCCCGTACGGCGCGGGAA
CCATCGCGGACAACGACGGGTCGAGGATGCCCAGCGACCTCGAAAAGGGG
GTGGCCAAACACCAGGGCTCTTACTTCGCAGGAACCTGCAAGGCTCTCAA
GGCAGGCCGTGCCGCCGTCGCCTAAGGGTGGCCAAACACCAGGGCTCTTA
CTTCGCAGGAACCTGCAAGGCTCTCAAGGCAGGCCGTGCCGCCGTCGCCT
AA
back to top