mRNA_L-elsbetiae_contig5307.13467.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5307.13467.1 vs. uniprot
Match: D8LCN8_ECTSI (Heat shock protein 70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN8_ECTSI) HSP 1 Score: 382 bits (982), Expect = 2.150e-124 Identity = 238/322 (73.91%), Postives = 254/322 (78.88%), Query Frame = 1 Query: 13 GAGSAGMAMTGGMAFGGNAMGTPATFSSGFQPPPSGHAHGGPGDTCXXXXXXXAYDLRALQ---KEEEPVEDMHACLGVDVGTSTIKASLYLKDGGCKAVGGKAPLPACIQVDKKTGVKGVRRWLKSRAGGGSTSATPAKGVKLFYAGAXXXXXXXXXXXXXR-------KGAVVVWPLRLLALRGKGAEATQRVKSSLRHEIEVSSEDPKDAAAATEDQNEDDGDTSGVRLLLTSPDASDAKDREVWCTPEEVLAMLLEGVKAKAEEAHGVTLITCNLSAPGCLGDLHRVALQRSVFLAGMVPGRFVGAPLAAAVGCLWGR 948 G G AGMAM GMAFGG MGTP+TF PP XXXXXXX YDLRA +EEE ED HACLGVDVGTS+IKA LYLKDGGCK VGGKAPLPA I +D+KTGVKGVRRWLKSRAGGG A PAKGVKLF+A XXXXXXXXXXXX GA VVWPLRLLALRGKGAEATQRV+SSLRH+IEVSS + K+A T+DQ DGDTSGVR+LLTSPDA++ KDREVW TPEEVLAMLL GVKAKAEEAHGV + TCNLSAPGCLGDLHRVALQRSVFLAGMVPGRFVG+PLAAAVG LWGR Sbjct: 15 GGGGAGMAMGPGMAFGGTGMGTPSTFR-----PPXXXXXXXXXXXXXXXXXXXXYDLRAAACEAEEEELDEDTHACLGVDVGTSSIKACLYLKDGGCKTVGGKAPLPAGILIDRKTGVKGVRRWLKSRAGGGQAPAAPAKGVKLFHAVGGXXXXXXXXXXXXXXXXXXDGNGAAVVWPLRLLALRGKGAEATQRVQSSLRHDIEVSSVESKEA---TDDQG--DGDTSGVRVLLTSPDAAETKDREVWVTPEEVLAMLLAGVKAKAEEAHGVMIKTCNLSAPGCLGDLHRVALQRSVFLAGMVPGRFVGSPLAAAVGYLWGR 326
BLAST of mRNA_L-elsbetiae_contig5307.13467.1 vs. uniprot
Match: A0A835Z170_9STRA (Hsp70 protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z170_9STRA) HSP 1 Score: 137 bits (346), Expect = 1.190e-32 Identity = 108/288 (37.50%), Postives = 133/288 (46.18%), Query Frame = 1 Query: 106 PPPSGHAHGGPGDTCXXXXXXXAYDLRALQKEEE-PVEDMHACLGVDVGTSTIKASLYLKDGGCKAVGGKAPLPACIQVDKKTGVKGVRRWLK--SRAGGGSTSATPA------KGVKLFYAGAXXXXXXXXXXXXXRKGAVVVWPLRLL-ALRGKGAEATQRVKSSLRHEIEVSSEDPKDAAAATEDQNEDDGDTSGVRLLLTSPDASDAKDREVWCTPEEVLAMLLEGVKAKAEEAHGVTLITCNLSAPGCLGDLHRVALQRSVFLAGMVPGRFVGAPLAAAVGCL 939 PP G G D C AYDLR + P ED+ ACLGV +G +T A LYL D G + G+APLPA + +D KTG +G+R+W K SR+G + T G+ AG R+ A WP+ L+ A RG DAA DTSGV + L +A C PE +LA LL ++ KA A V +TCN + P GD RVALQR+VFLAGM P RFV APLAAAVG L Sbjct: 35 PPTFGAGAAGCADACCGAGG--AYDLRGQAAADAGPQEDLSACLGVALGATTYSACLYLADKGAVPLTGRAPLPAALWLDPKTGARGLRKWAKRDSRSGALPKAVTVGLRGEGEAGLLRVPAGMRLLGARHRPGALLREAAA--WPVELVEAARGD------------------------DAA----------DDTSGVHICLPG----EAGQEWRACEPEHLLAALLVSLRLKAAAAFKVECVTCNFTVPAWFGDAPRVALQRAVFLAGMRPARFVSAPLAAAVGAL 280 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5307.13467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5307.13467.1 >prot_L-elsbetiae_contig5307.13467.1 ID=prot_L-elsbetiae_contig5307.13467.1|Name=mRNA_L-elsbetiae_contig5307.13467.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=317bp MAGAGAGSAGMAMTGGMAFGGNAMGTPATFSSGFQPPPSGHAHGGPGDTCback to top mRNA from alignment at L-elsbetiae_contig5307:5541..12361+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5307.13467.1 ID=mRNA_L-elsbetiae_contig5307.13467.1|Name=mRNA_L-elsbetiae_contig5307.13467.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6821bp|location=Sequence derived from alignment at L-elsbetiae_contig5307:5541..12361+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5307:5541..12361+ >mRNA_L-elsbetiae_contig5307.13467.1 ID=mRNA_L-elsbetiae_contig5307.13467.1|Name=mRNA_L-elsbetiae_contig5307.13467.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1902bp|location=Sequence derived from alignment at L-elsbetiae_contig5307:5541..12361+ (Laminarionema elsbetiae ELsaHSoW15)back to top |