mRNA_L-elsbetiae_contig530.13457.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig530.13457.1
Unique NamemRNA_L-elsbetiae_contig530.13457.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig530.13457.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 3.810e-5
Identity = 37/75 (49.33%), Postives = 45/75 (60.00%), Query Frame = 2 
Query:   92 PKVVRMLVEAGADTATAVQLRITPGGKIRFNVTPLALTNLYLRTSKSATCNASGKALHTEEELNELEGTRRLLLQ 316
            P++VRMLV+AGADT + VQ+    GG + FN TPLA T L LR        A GK   T+E L  LE   RLLL+
Sbjct:  398 PRIVRMLVDAGADTTSPVQVMNLKGGVV-FNDTPLAFTKLRLRKK----IVADGKPA-TKEHLQRLEAICRLLLR 466
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BLAST of mRNA_L-elsbetiae_contig530.13457.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 6.440e-5
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 2 
Query:   92 PKVVRMLVEAGADTATAVQLRITPGGKIRFNVTPLALTNLYLRTSKSATCNASGKALHTEEELNELEGTRRLLLQ 316
            P++VR+LV+AGADT + V++    GG + +N TPLA+T   LR          GK   TEE+L+ L+  RRLLL+
Sbjct:   78 PRIVRLLVDAGADTTSTVRVTNLNGG-VEYNDTPLAVTTSLLREKV-----VDGKPA-TEEQLHRLQAIRRLLLR 145
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig530.13457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT11_ECTSI3.810e-549.33EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LSC5_ECTSI6.440e-544.00EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig530contigL-elsbetiae_contig530:12226..13256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size423
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig530.13457.1prot_L-elsbetiae_contig530.13457.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig530 12332..13248 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816548.869532-UTR-L-elsbetiae_contig530:12225..123311622816548.869532-UTR-L-elsbetiae_contig530:12225..12331Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig530 12226..12331 +
1691683639.612687-UTR-L-elsbetiae_contig530:12225..123311691683639.612687-UTR-L-elsbetiae_contig530:12225..12331Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig530 12226..12331 +
1622816548.9011645-UTR-L-elsbetiae_contig530:13248..132561622816548.9011645-UTR-L-elsbetiae_contig530:13248..13256Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig530 13249..13256 +
1691683639.6467354-UTR-L-elsbetiae_contig530:13248..132561691683639.6467354-UTR-L-elsbetiae_contig530:13248..13256Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig530 13249..13256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816548.8801486-CDS-L-elsbetiae_contig530:12331..125411622816548.8801486-CDS-L-elsbetiae_contig530:12331..12541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig530 12332..12541 +
1691683639.625024-CDS-L-elsbetiae_contig530:12331..125411691683639.625024-CDS-L-elsbetiae_contig530:12331..12541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig530 12332..12541 +
1622816548.8909647-CDS-L-elsbetiae_contig530:13149..132481622816548.8909647-CDS-L-elsbetiae_contig530:13149..13248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig530 13150..13248 +
1691683639.6361992-CDS-L-elsbetiae_contig530:13149..132481691683639.6361992-CDS-L-elsbetiae_contig530:13149..13248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig530 13150..13248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig530.13457.1

>prot_L-elsbetiae_contig530.13457.1 ID=prot_L-elsbetiae_contig530.13457.1|Name=mRNA_L-elsbetiae_contig530.13457.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MLVEAGADTATAVQLRITPGGKIRFNVTPLALTNLYLRTSKSATCNASGK
ALHTEEELNELEGTRRLLLQELSEALTGTAHSTRTMVSPVRFAVGRSGAW
TL*
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mRNA from alignment at L-elsbetiae_contig530:12226..13256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig530.13457.1 ID=mRNA_L-elsbetiae_contig530.13457.1|Name=mRNA_L-elsbetiae_contig530.13457.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1031bp|location=Sequence derived from alignment at L-elsbetiae_contig530:12226..13256+ (Laminarionema elsbetiae ELsaHSoW15)
AGGAAAACTGACGGTGGGGATGCGTTGTACGTGAGCACTCGCAATCTGTT
TGGCTGCACGTCGTTATGCCGTAGCTAGCCGCCGTTCCACGCCCAAGGTT
GTGCGGATGCTCGTTGAAGCTGGAGCAGACACTGCGACGGCCGTTCAGCT
CAGAATCACTCCCGGTGGTAAGATCCGATTCAACGTCACCCCTCTGGCTC
TCACGAATCTTTACCTCCGTACAAGCAAGTCCGCGACATGCAATGCCTCG
GGGAAGGCGCTGCATACGGAGGAGGAGCTGAACGAGCTGGAGGGCACCCG
CCGCTTGCTGTTGCAGGTGAAGGCTGTTCATGCGATGTCCTGGTTGTAGC
ATGTCGATATCCCTTGCATCATCAACACCGCAGAGGAAAAATGTAAGGAC
AAGATCACTTCGACATCGCTGAGACTGACTCTGCCGATACTGAGGCGACG
GGTGATGAGGCTGGGTATGCTCTTGGCGACCCTGCCGTGATGCCGTGTCA
GGTCATTGTTTGACTCCTGGTTTTTGGTTTGTGTTCATGTGCCACCTGCA
GTACCCTACTCAATAGTGTATTTTATTCTGTGTTTCCTGTATCCAGAAGT
TGCGCAGCGTGTCCATGCTCGTTTTCGCGGTCAGAACGGCACTACGTACT
GTGCTTGTCGCACCGTGGTGTCAGGAGGCTTGTCAAGTCTTCCATACGCC
TTGCGCCTCAGAAAGTATCCTTGGGCGTATCTTTCCGGAAGAGGAACGAC
GATATCGTTTTTCCCTGACGGCTTCGTCCTTCGAAAAAAACGGAGGGGGT
GTCGATTAACTTGTTCAGTAGAGTCTGCCCTCATCAATATCCATAATAAT
CTAAGCTATCTGGTCTGCTCTTTGCTACGTGTGGCTGTCCGCCTTTGGCT
TGCCACCCCTGCATCGGTTTGTAGGAACTCAGCGAAGCCTTGACTGGGAC
TGCTCACTCGACTCGGACCATGGTGTCACCTGTTCGTTTTGCCGTCGGGC
GGAGCGGCGCATGGACTCTCTAGTAGGTCTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig530:12226..13256+

>mRNA_L-elsbetiae_contig530.13457.1 ID=mRNA_L-elsbetiae_contig530.13457.1|Name=mRNA_L-elsbetiae_contig530.13457.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig530:12226..13256+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCGTTGAAGCTGGAGCAGACACTGCGACGGCCGTTCAGCTCAGAAT
CACTCCCGGTGGTAAGATCCGATTCAACGTCACCCCTCTGGCTCTCACGA
ATCTTTACCTCCGTACAAGCAAGTCCGCGACATGCAATGCCTCGGGGAAG
GCGCTGCATACGGAGGAGGAGCTGAACGAGCTGGAGGGCACCCGCCGCTT
GCTGTTGCAGATGCTCGTTGAAGCTGGAGCAGACACTGCGACGGCCGTTC
AGCTCAGAATCACTCCCGGTGGTAAGATCCGATTCAACGTCACCCCTCTG
GCTCTCACGAATCTTTACCTCCGTACAAGCAAGTCCGCGACATGCAATGC
CTCGGGGAAGGCGCTGCATACGGAGGAGGAGCTGAACGAGCTGGAGGGCA
CCCGCCGCTTGCTGTTGCAGGAACTCAGCGAAGCCTTGACTGGGACTGCT
CACTCGACTCGGACCATGGTGTCACCTGTTCGTTTTGCCGTCGGGCGGAG
CGGCGCATGGACTCTCTAGGAACTCAGCGAAGCCTTGACTGGGACTGCTC
ACTCGACTCGGACCATGGTGTCACCTGTTCGTTTTGCCGTCGGGCGGAGC
GGCGCATGGACTCTCTAG
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