mRNA_L-elsbetiae_contig5292.13436.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5292.13436.1
Unique NamemRNA_L-elsbetiae_contig5292.13436.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5292.13436.1 vs. uniprot
Match: D7FWS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS8_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 5.440e-23
Identity = 61/112 (54.46%), Postives = 75/112 (66.96%), Query Frame = 2 
Query:  104 EADKKHRAAFKARVSENRRKARFEKGRPQRDVRMSTLVRLLDAVLEIEPWNSARHVSGRAAAWGDCGRRA-GLLKDKGKANAHKTVQQRVYRLARQLNDSTSGFLWKGYPEV 436
            EADK+ RAA KA+  E  RKAR E  RP+RD +M+ L+RLLDAVLE+EPWN ARH    + AW +CGRR  G LK+  +      VQQ+V+RL  QL D T+   WK YPEV
Sbjct:   19 EADKRRRAARKAKGLEASRKARAEMRRPRRDEKMALLLRLLDAVLEVEPWNLARHTKV-SEAWEECGRRVPGYLKEGARTEPRLLVQQQVFRLGDQLIDPTAKTPWKSYPEV 129
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5292.13436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWS8_ECTSI5.440e-2354.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5292contigL-elsbetiae_contig5292:985..4792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1591
Cds size630
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5292.13436.1prot_L-elsbetiae_contig5292.13436.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5292 1879..4725 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816546.8838077-UTR-L-elsbetiae_contig5292:984..18781622816546.8838077-UTR-L-elsbetiae_contig5292:984..1878Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5292 985..1878 -
1691683638.1251438-UTR-L-elsbetiae_contig5292:984..18781691683638.1251438-UTR-L-elsbetiae_contig5292:984..1878Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5292 985..1878 -
1622816546.9189987-UTR-L-elsbetiae_contig5292:4725..47921622816546.9189987-UTR-L-elsbetiae_contig5292:4725..4792Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5292 4726..4792 -
1691683638.1546774-UTR-L-elsbetiae_contig5292:4725..47921691683638.1546774-UTR-L-elsbetiae_contig5292:4725..4792Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5292 4726..4792 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816546.8942275-CDS-L-elsbetiae_contig5292:1878..23431622816546.8942275-CDS-L-elsbetiae_contig5292:1878..2343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5292 1879..2343 -
1691683638.1358156-CDS-L-elsbetiae_contig5292:1878..23431691683638.1358156-CDS-L-elsbetiae_contig5292:1878..2343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5292 1879..2343 -
1622816546.905092-CDS-L-elsbetiae_contig5292:4560..47251622816546.905092-CDS-L-elsbetiae_contig5292:4560..4725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5292 4561..4725 -
1691683638.1455617-CDS-L-elsbetiae_contig5292:4560..47251691683638.1455617-CDS-L-elsbetiae_contig5292:4560..4725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5292 4561..4725 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5292.13436.1

>prot_L-elsbetiae_contig5292.13436.1 ID=prot_L-elsbetiae_contig5292.13436.1|Name=mRNA_L-elsbetiae_contig5292.13436.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=210bp
MCLTSHKRMGGQEADKKHRAAFKARVSENRRKARFEKGRPQRDVRMSTLV
RLLDAVLEIEPWNSARHVSGRAAAWGDCGRRAGLLKDKGKANAHKTVQQR
VYRLARQLNDSTSGFLWKGYPEVTERVVKVAAKLRVDSDLKGTLGPDRMQ
GLVEHRASNPATPERPRAIAEQRQQLQGPEVPGAYTELQVALRFFVAAAE
RASHSAMAC*
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mRNA from alignment at L-elsbetiae_contig5292:985..4792-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5292.13436.1 ID=mRNA_L-elsbetiae_contig5292.13436.1|Name=mRNA_L-elsbetiae_contig5292.13436.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3808bp|location=Sequence derived from alignment at L-elsbetiae_contig5292:985..4792- (Laminarionema elsbetiae ELsaHSoW15)
AAGAGGAGGGAGGCGGGTAATAACCCTCGTAAGAGGTCCGTAATAAGCGC
ACGCGACGACGCCAGGGATGTGTCTGACTTCCCACAAGCGTATGGGCGGG
CAGGAGGCTGACAAGAAGCATCGGGCCGCCTTCAAGGCGAGGGTGTCGGA
AAATCGCAGGAAGGCCCGATTCGAGAAAGGACGCCCGCAGCGGGACGTGA
GAATGTCCACACTCGTGAGGCTCCTTGATGCGGTGAGCTAGTAACTTTCC
GCCCCGTGCATGACCCCCCGTTTCGGACTTTGTTGAAAGTAAATCAAGAA
ATCAAAAGAGGAGTTGCTGCAAATTTATCCCCATCTAGTCGATCATCTGT
TGTCGATCAAAACCCAGCGGCGCGTGCACGGTGAGCCGAGCACCCGCGGT
CAAGCTTGTTCGGTTCGCCCTGCCCTTTTCAAGCTGATTGGGATCGGGTC
GTCTTGCCGGTGTTTGACGAAGGGGTAGGCCTTGACCAAACTAGGTACAG
CAGTAACAGTAGTCACCTTTCCAACCACGCCGCCCCACTGAGAGTGTGGT
CCCAACAGCAGCTGAGGGATAAATTGGAGCCCATGTGACCAGCCTGCGCG
CGTGAGAAAAGAACAGGCATTCTTTGTGTGCACATCTGACAATCCAAGCA
TCTCGCGCACGTGTGTCTATGTAGTAGGGCTTGTTGTGTTTTGGATGTGC
ATTACAAGGACGCAGAGGGCAGACCTAAGGGACACGACGGGGGGATGGGC
CCCGACATAGTACGACTCTCTGGGTACCAACACCCAGACTTATCGGCGAC
ACCGCAGTTCTGTTCCGTGCGCTCACGAACTCAGACCTGGCTCGGGTCGT
CTCCCCAGCTACGCTACTGTCGTGGCAAGTTGAGACCCGGCCTAGCACGA
CACCTCTCAGCGTCGTGGTGTTTTTGCGCGTCACAAGAACCCCGCTGAGC
ACACAGCGGTCTGCTCTGCCTGCCACGCTCTCTTTTTTAAGGCAAGTGGA
CTGCTGCGTGTTTGATCACACGCAACCAGCCCACGTTTTCACAGCATTTC
CTTGGGGTTACTGTATGGCTTGGCCTTGGTACGCACGAGACAACTTTTCA
GTTTGTTTTCTAGTCACCAGTTTTCGAGAGGAGGTTTGGTCGTTGTTTGT
CATTTCCAGTCAAAAAAATGTCACTAAAATCGGCTAGGTCGCGGCAGCTG
GGGCGGACGGGGCCTTGTATACGTAGCGGGCAGCCAGAACCGCGATACAT
TTTTTTTCGGCGTTTTTTGTTCCCGAGGGGCAAAGCTTGTTGCGCGCTTT
CGAGGGGAGTATCACAAAGATTCAATCGCTGGATGTACCCATCACATCCA
ATCCCGGTCGGTCCAAACCACTTAAAACCAAGCCCCATCCATAATTTAAG
GGGGTGCTGACTACAGTGGGGATAAGGATTCACACTAAACCCAAGACACT
AAGGCCCGAAAAATTCCCTGTGGATAGTTACACATTCTGACCCCTTAGAT
CGCCAAAGGACACTCATAGCACCGGTATATGTGTGTTGGCACGCTCAGAC
CTGCTGCTGGGGCGGAGATATCGTGGGTCAAAGCAGTCGCGGGACTGTCC
GCAAATTTGGCAACATTTTTATGTTTGTCACGGCTGTGCTCGCCGCCACG
GGCGGTGTCCTGCTGAACTGCGGGTCCTCAGCAGTAGCTAGTGGTATCAG
CTACTGCTGTACGCCCGCAGTTCAGGAGGCTGGGGTCAGTGGCGGTGAGC
ACAGCAGTCGGAAACACGGGGTGTCGGGTCAATTGCGGAGATTGGAGGCT
GCTGCTGCGACCCTCGATATCACCCCGACAGCAGTGGATTCGCGGGTACC
GACGCACATATGCCGGTGCTATAGGGTGTCCTCTAGTGATCTAAGGGGTC
ACAATGCGTACCGACCCAAGCCAGACCTTGTTTGAGCGTCCGCCGTTTTG
GCTCTTTTGACTTGATTTTAGACTGGGGCGAAGATTTGTCTTGATTTTAA
AGTCAGGGGGGATGGTATCCCACGTGATTGTTACCCAAAGAGAAGCCTCC
ACCTGCTGCCCTACGCTAGAAACAACGGATTTTGTCGTGCCCACCGCCTC
CCTACTGGCCTGGCGTGTCTAGTATGTGGTTGCTGGGTGCTCATTACGGC
CTTTTTCAAAACTAGTCAACTCCAAGATCGCTTGTCAGCACCCCCTTAAG
TCGTATTTCGATGCAGGCTTCACCGAGCCCGGAACACATGCCTTCTCGGT
CGACCCCTCAAAAAATGGTGTCACAGGGTACTACTGCAGTTCGATCTCGC
GCGTAGTACAAAACGGCACTAGGGATAATACCAGCCGCGCTTCTGACGGG
CCCCAAGAGACGCGATCCAGTTTCTCTTGCGAATGCCTTCATGTCCCCGG
ACACTTCACTTCAAAATGCTGTCTGTCCGTATCGCCTCTCCCCAACCAGG
TGCTTGAAATCGAACCGTGGAACTCGGCACGCCATGTATCCGGTCGTGCG
GCTGCGTGGGGGGACTGCGGGCGGCGGGCCGGACTCCTTAAGGACAAGGG
CAAGGCGAACGCCCACAAGACGGTGCAACAGCGCGTCTATCGTTTGGCCC
GCCAGCTGAACGACTCCACGTCAGGTTTCCTCTGGAAAGGGTACCCAGAG
GTGACGGAAAGGGTGGTGAAAGTCGCAGCCAAGCTGAGGGTCGACTCGGA
CCTGAAAGGAACACTTGGGCCTGACCGGATGCAGGGTCTGGTGGAGCACA
GGGCCTCCAACCCGGCAACACCCGAGAGGCCGCGGGCTATCGCGGAACAG
CGCCAACAGCTACAGGGGCCTGAGGTTCCCGGGGCGTACACAGAGCTGCA
AGTCGCCCTTCGCTTTTTCGTGGCCGCGGCGGAACGGGCGTCTCATTCGG
CGATGGCTTGTTAACAGCGCGCAGGTTCTCTTCTTGTTACCCTACATACG
AGGGTGTTCGATCCCGGAAGAAAAATGGCCGGGTAGGGTACTCCGTTTTC
TTTTTTAGGGTCGGCATACCTCGTCTTGTGGCGCGCACGTGCGTAGGATA
ATGGTGGCTCTAGAGAAGTTGTCGTCGGCAGTGCATAGGCTACCTGCCGG
CGAGGTCGGGAAGCTGTGTTGGTGGCCTTCCTGGCAGATCGGGAACGGAA
CGTGCTCGCACAATACACGTGTTCCCTAGTCTATGAGCGCTGGGTGGAAT
CAGGGTTTTCATCGAACTTGTGTCGGACTGACAGAGGGTTGTGATTGGGT
TCCCGTGCGGGCCGGCAGTGGTTCTTGACCCCGATCCCCAAGCTCTCTCA
AACCTGGGCTTCCGGCGGGCCGATCTATGTTGTCTGTGGCCGGGTACAGT
AGTATCGAGAGCAGGACGATGGGCACGTTTCATACAGCCAGCCAAAGAGG
TGACGTTTGTGATTGATGTTGGGATCCTTTGTGCTGATAATTCAGTCTCA
CAATCATGAGGTGATTTCTGTTAGCGATTGGAAGATTTGCGGCGTTTGCC
ACGATTGATCTCATGCACTCTAGATATGTAGACGGGCAAGAGAAGGAACT
ATCAAGGAGACCTTGAAGAGACACTCGAAAATGGCGCGAGTTAGTCGGTG
TGCCTCGCACACACGTGCATGAACAAGATAACAAGCCTAGGAGCGTACGA
CGGGATCCAAAGTAGCAACAGAGGTGTTTCACGCCTCGCCAACCTTGTGC
CTTTCGCCCGCAGGCATCGTTCGAGATGCATGCGGAGGAAGAACATGGTC
GCATTCCCCCCAGTGCAAAGGTTGCTCTTCTTCTTACCTAGTTTCCCTGA
AAACGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5292:985..4792-

>mRNA_L-elsbetiae_contig5292.13436.1 ID=mRNA_L-elsbetiae_contig5292.13436.1|Name=mRNA_L-elsbetiae_contig5292.13436.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1260bp|location=Sequence derived from alignment at L-elsbetiae_contig5292:985..4792- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTCTGACTTCCCACAAGCGTATGGGCGGGCAGGAGGCTGACAAGAA
GCATCGGGCCGCCTTCAAGGCGAGGGTGTCGGAAAATCGCAGGAAGGCCC
GATTCGAGAAAGGACGCCCGCAGCGGGACGTGAGAATGTCCACACTCGTG
AGGCTCCTTGATGCGATGTGTCTGACTTCCCACAAGCGTATGGGCGGGCA
GGAGGCTGACAAGAAGCATCGGGCCGCCTTCAAGGCGAGGGTGTCGGAAA
ATCGCAGGAAGGCCCGATTCGAGAAAGGACGCCCGCAGCGGGACGTGAGA
ATGTCCACACTCGTGAGGCTCCTTGATGCGGTGCTTGAAATCGAACCGTG
GAACTCGGCACGCCATGTATCCGGTCGTGCGGCTGCGTGGGGGGACTGCG
GGCGGCGGGCCGGACTCCTTAAGGACAAGGGCAAGGCGAACGCCCACAAG
ACGGTGCAACAGCGCGTCTATCGTTTGGCCCGCCAGCTGAACGACTCCAC
GTCAGGTTTCCTCTGGAAAGGGTACCCAGAGGTGACGGAAAGGGTGGTGA
AAGTCGCAGCCAAGCTGAGGGTCGACTCGGACCTGAAAGGAACACTTGGG
CCTGACCGGATGCAGGGTCTGGTGGAGCACAGGGCCTCCAACCCGGCAAC
ACCCGAGAGGCCGCGGGCTATCGCGGAACAGCGCCAACAGCTACAGGGGC
CTGAGGTTCCCGGGGCGTACACAGAGCTGCAAGTCGCCCTTCGCTTTTTC
GTGGCCGCGGCGGAACGGGCGTCTCATTCGGCGATGGCTTGTTAAGTGCT
TGAAATCGAACCGTGGAACTCGGCACGCCATGTATCCGGTCGTGCGGCTG
CGTGGGGGGACTGCGGGCGGCGGGCCGGACTCCTTAAGGACAAGGGCAAG
GCGAACGCCCACAAGACGGTGCAACAGCGCGTCTATCGTTTGGCCCGCCA
GCTGAACGACTCCACGTCAGGTTTCCTCTGGAAAGGGTACCCAGAGGTGA
CGGAAAGGGTGGTGAAAGTCGCAGCCAAGCTGAGGGTCGACTCGGACCTG
AAAGGAACACTTGGGCCTGACCGGATGCAGGGTCTGGTGGAGCACAGGGC
CTCCAACCCGGCAACACCCGAGAGGCCGCGGGCTATCGCGGAACAGCGCC
AACAGCTACAGGGGCCTGAGGTTCCCGGGGCGTACACAGAGCTGCAAGTC
GCCCTTCGCTTTTTCGTGGCCGCGGCGGAACGGGCGTCTCATTCGGCGAT
GGCTTGTTAA
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