mRNA_L-elsbetiae_contig529.13429.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig529.13429.1
Unique NamemRNA_L-elsbetiae_contig529.13429.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig529.13429.1 vs. uniprot
Match: A0A6H5KVK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK7_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.260e-17
Identity = 102/167 (61.08%), Postives = 114/167 (68.26%), Query Frame = 1 
Query:   85 DGAVAPGARRSRRSASLGHEQDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRIACFPSVEARIRALKSKPDDKGILTMLRQLRYLQTGGGEGGXXGHRVGDGRSEKILAADGHGAIFASAXXXXXXXXDAGGCGPRN--------VLTGAEVEKLILEEL 561
            D  V  G RRSRRSAS+G EQD EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   TRIACFPSVEAR+RALKSKPDD+GILT+LRQL++LQT   EGG                  G        XXXXXX  D G  GP+N        VLT A++E+++LEEL
Sbjct:  934 DAEVGAGGRRSRRSASMGQEQDLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---TRIACFPSVEARVRALKSKPDDRGILTVLRQLKHLQTACEEGGKE---------------FGXXXXXXXXXXXXXXVVDDGVLGPKNEVKNVSNNVLTDAQIERILLEEL 1082
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BLAST of mRNA_L-elsbetiae_contig529.13429.1 vs. uniprot
Match: D7FK51_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK51_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 5.730e-14
Identity = 55/110 (50.00%), Postives = 69/110 (62.73%), Query Frame = 1 
Query:  256 TRIACFPSVEARIRALKSKPDDKGILTMLRQLRYLQTGGGEGGXXGHRVGDGRSEKILAADGHGAIFASAXXXXXXXXDAGGCGPRN--------VLTGAEVEKLILEEL 561
            TRIACFPSVEAR+RALKSKPDD+GILT+LRQL++LQT   EGG           +++             XXXXXX  D G  GP+N        VLT A++E+++LEEL
Sbjct:  839 TRIACFPSVEARVRALKSKPDDRGILTVLRQLKHLQTASEEGG-----------KEVXXXX--XXXXXXXXXXXXXVVDDGALGPKNDVKNVLNNVLTDAQIERILLEEL 935
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig529.13429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVK7_9PHAE1.260e-1761.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK51_ECTSI5.730e-1450.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig529contigL-elsbetiae_contig529:17019..18617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog2880.D7FK51
KEGG koko:K20523,ko:K20865
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons3
Model size797
Cds size564
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig529.13429.1prot_L-elsbetiae_contig529.13429.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig529 17019..18385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816546.339117-CDS-L-elsbetiae_contig529:17018..173031622816546.339117-CDS-L-elsbetiae_contig529:17018..17303Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig529 17019..17303 +
1691683637.7753627-CDS-L-elsbetiae_contig529:17018..173031691683637.7753627-CDS-L-elsbetiae_contig529:17018..17303Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig529 17019..17303 +
1622816546.3536935-CDS-L-elsbetiae_contig529:17704..178551622816546.3536935-CDS-L-elsbetiae_contig529:17704..17855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig529 17705..17855 +
1691683637.7882106-CDS-L-elsbetiae_contig529:17704..178551691683637.7882106-CDS-L-elsbetiae_contig529:17704..17855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig529 17705..17855 +
1622816546.3668804-CDS-L-elsbetiae_contig529:18257..183851622816546.3668804-CDS-L-elsbetiae_contig529:18257..18385Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig529 18258..18385 +
1691683637.802833-CDS-L-elsbetiae_contig529:18257..183851691683637.802833-CDS-L-elsbetiae_contig529:18257..18385Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig529 18258..18385 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816546.3781238-UTR-L-elsbetiae_contig529:18385..186171622816546.3781238-UTR-L-elsbetiae_contig529:18385..18617Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig529 18386..18617 +
1691683637.8158648-UTR-L-elsbetiae_contig529:18385..186171691683637.8158648-UTR-L-elsbetiae_contig529:18385..18617Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig529 18386..18617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig529.13429.1

>prot_L-elsbetiae_contig529.13429.1 ID=prot_L-elsbetiae_contig529.13429.1|Name=mRNA_L-elsbetiae_contig529.13429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=188bp
GGGGGAGHGLPVAGLAVGQGGGGGEDVDDGAVAPGARRSRRSASLGHEQD
DEVDSPPPPSKRYRNNGSGSGNGNASSSSSGSSTKTRIACFPSVEARIRA
LKSKPDDKGILTMLRQLRYLQTGGGEGGGGGHRVGDGRSEKILAADGHGA
IFASAAAAAGGGGDAGGCGPRNVLTGAEVEKLILEEL*
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mRNA from alignment at L-elsbetiae_contig529:17019..18617+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig529.13429.1 ID=mRNA_L-elsbetiae_contig529.13429.1|Name=mRNA_L-elsbetiae_contig529.13429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1599bp|location=Sequence derived from alignment at L-elsbetiae_contig529:17019..18617+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGGAGGAGGGGGAGCGGGGCATGGCCTTCCCGTGGCCGGTCTTGCGGT
AGGGCAGGGTGGCGGTGGTGGTGAGGATGTCGACGACGGCGCGGTCGCGC
CGGGCGCGAGGAGAAGCCGGCGGTCGGCGTCGCTGGGGCACGAGCAGGAC
GATGAGGTGGACAGCCCGCCGCCGCCGAGCAAGCGGTACCGCAACAACGG
CAGCGGCAGCGGCAACGGCAACGCCAGCAGCAGCAGCAGCGGCAGCTCCA
CTAAGACGAGGATCGCGTGCTTCCCGTCGGTCGAGGTGCGCACCGTGAGC
GTTTCGGATCAATTGGTTGCTCCCGGTTGGATGCACTGCCAAGGTGGTTG
CGTTTTTTTTTAATATGAATCCAGATATGATATCTATGTATCGTAGGAAG
TACTTGGTAGGTATATACAAGCATGTGTCATTTTTTTTTTTTTTTTTAGA
GCTTGTTGTTTGCCTTTCCAGCGAAGCTTGTTGTCGTGGGTCGGGGTCAG
GGGTCAGGGGTCAGAACCGGACGTATATCGGGCAGTATGTCTTCGCGTAT
AGCTGTGTTACATTTGTCTCTGTTGTTTCGTCGCGGCGGCGCATGTCGTC
GTGTGACCGTGTGTTTTTATTTGCTTCGTTTCCTGCGCCGTGCGCGTGTC
CGTCCGTCTGCGTGCGTGCGTGCGACGCGGCGAAAGGCTCGCATCCGTGC
TCTTAAATCCAAGCCGGACGACAAGGGCATCTTAACGATGCTCCGGCAGC
TCCGGTACCTCCAGACCGGCGGCGGAGAGGGAGGCGGAGGAGGGCACCGC
GTGGGTGACGGCAGGAGCGAGAAAATTCTTGCCGCAGGTAAATCGCGGGC
TCAGAGAGGGGGGTATTTAGAGGGAGAGAAACTTGCAAGCACAAATAGCA
GGCAGAGTCTGCCGGTCTGTTGGCAGCAGAGTCTGCTGGCCCGTTGTTCC
TGCTGTCCGGACATCTGTCGTGTTGCCGGTGTGTGTTGCCGGTGCGTGTC
TTGTATCTTGTGTGTTTGTGTGTTTGTGTGTGTCGCCCTCTGTACCGCTG
CATAAGCAGATACCTTCTCCCGGAAACCGCCCCTTTGGGTAAAATATCTG
AGGGTCAGATGGTCTCTTCTCGTCCGTCGGCATCCAATCAGCTCCAAGTG
TCGCCGTTCACCTCAAAAGTTCGTTTTACTTTTGTCTGCCTCCCCATGCC
GCATGTTGTGTTGGTTATCTCACCGACTCTTGTTTCCAGACGGGCACGGC
GCCATCTTTGCTTCCGCGGCGGCGGCGGCGGGAGGCGGGGGGGATGCCGG
CGGGTGCGGCCCGAGGAACGTTCTGACGGGCGCGGAGGTCGAAAAATTGA
TCCTGGAGGAGCTCTGACCCGGTGCGCGGCCGTGTTATGTAGGTGTGCCG
TGCCGCCGCGGCTTCTTATTTCCGCTGATGCTACTGATGCTACTGCTGAT
GCTGCTGATGCTGCTGATGCCGGAAACGTGCTATTTTCGGTGGGTATGTA
GGAGAACTGAGGGAAGAAATTGCGGGGAGAGGGGGGAGGGAGGGTCCTTT
ACGACTGAAGTGTTTTTGAGGGGCTACAAGTAGTACGTGATTTTGGTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig529:17019..18617+

>mRNA_L-elsbetiae_contig529.13429.1 ID=mRNA_L-elsbetiae_contig529.13429.1|Name=mRNA_L-elsbetiae_contig529.13429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1128bp|location=Sequence derived from alignment at L-elsbetiae_contig529:17019..18617+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGGAGGAGGGGGAGCGGGGCATGGCCTTCCCGTGGCCGGTCTTGCGGT
AGGGCAGGGTGGCGGTGGTGGTGAGGATGTCGACGACGGCGCGGTCGCGC
CGGGCGCGAGGAGAAGCCGGCGGTCGGCGTCGCTGGGGCACGAGCAGGAC
GATGAGGTGGACAGCCCGCCGCCGCCGAGCAAGCGGTACCGCAACAACGG
CAGCGGCAGCGGCAACGGCAACGCCAGCAGCAGCAGCAGCGGCAGCTCCA
CTAAGACGAGGATCGCGTGCTTCCCGTCGGTCGAGGGAGGAGGAGGGGGA
GCGGGGCATGGCCTTCCCGTGGCCGGTCTTGCGGTAGGGCAGGGTGGCGG
TGGTGGTGAGGATGTCGACGACGGCGCGGTCGCGCCGGGCGCGAGGAGAA
GCCGGCGGTCGGCGTCGCTGGGGCACGAGCAGGACGATGAGGTGGACAGC
CCGCCGCCGCCGAGCAAGCGGTACCGCAACAACGGCAGCGGCAGCGGCAA
CGGCAACGCCAGCAGCAGCAGCAGCGGCAGCTCCACTAAGACGAGGATCG
CGTGCTTCCCGTCGGTCGAGGCTCGCATCCGTGCTCTTAAATCCAAGCCG
GACGACAAGGGCATCTTAACGATGCTCCGGCAGCTCCGGTACCTCCAGAC
CGGCGGCGGAGAGGGAGGCGGAGGAGGGCACCGCGTGGGTGACGGCAGGA
GCGAGAAAATTCTTGCCGCAGGCTCGCATCCGTGCTCTTAAATCCAAGCC
GGACGACAAGGGCATCTTAACGATGCTCCGGCAGCTCCGGTACCTCCAGA
CCGGCGGCGGAGAGGGAGGCGGAGGAGGGCACCGCGTGGGTGACGGCAGG
AGCGAGAAAATTCTTGCCGCAGACGGGCACGGCGCCATCTTTGCTTCCGC
GGCGGCGGCGGCGGGAGGCGGGGGGGATGCCGGCGGGTGCGGCCCGAGGA
ACGTTCTGACGGGCGCGGAGGTCGAAAAATTGATCCTGGAGGAGCTCTGA
ACGGGCACGGCGCCATCTTTGCTTCCGCGGCGGCGGCGGCGGGAGGCGGG
GGGGATGCCGGCGGGTGCGGCCCGAGGAACGTTCTGACGGGCGCGGAGGT
CGAAAAATTGATCCTGGAGGAGCTCTGA
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