mRNA_L-elsbetiae_contig528.13419.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig528.13419.1
Unique NamemRNA_L-elsbetiae_contig528.13419.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig528.13419.1 vs. uniprot
Match: D7G283_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G283_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 5.240e-48
Identity = 92/150 (61.33%), Postives = 108/150 (72.00%), Query Frame = 1 
Query:   10 RGRSGG--EKFEAEDRLVIPLSSLANIGLAEVYQQQSSKGAQSRLSSWLS-----RRRGGDVEEVDCKASKSKEFDSLEKHGQGGRLVEVPVLALSYWVNGKPRWVGDQPKRLLVKPDSLDAFRRLSYGLRLCCLHFHNHSCPQDLEDIR 438
            RG + G  +   AEDR VIPLSSLANIG AE+Y+Q     ++  L SWLS     RR   D      K  K K+ DS++K G  G +  VPVLALSYWV G+PRWVGDQPKRLLV+PDSLD+F+RLS+GLRLCCLHFHN+SCPQDLEDIR
Sbjct:  411 RGAAAGANQGLGAEDRRVIPLSSLANIGPAELYRQ-GPPSSRRNLLSWLSIPSSLRRASEDAPVGYGKIQKDKDLDSVDK-GTAGLVEAVPVLALSYWVEGEPRWVGDQPKRLLVRPDSLDSFQRLSHGLRLCCLHFHNYSCPQDLEDIR 558
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BLAST of mRNA_L-elsbetiae_contig528.13419.1 vs. uniprot
Match: A0A6H5L7W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W7_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 5.080e-47
Identity = 88/144 (61.11%), Postives = 104/144 (72.22%), Query Frame = 1 
Query:   22 GGEKFEAEDRLVIPLSSLANIGLAEVYQQQSSKGAQSRLSSWLS-----RRRGGDVEEVDCKASKSKEFDSLEKHGQGGRLVEVPVLALSYWVNGKPRWVGDQPKRLLVKPDSLDAFRRLSYGLRLCCLHFHNHSCPQDLEDIR 438
            G +   AEDR VIPLSSLANIG AE+Y+   +  ++  L SWLS     RR  GD      K  K K+ D ++ +G+ G +  VPVLALSYWV GKPRWVGD PKRLLV PDSLD+F+RLS+GLRLCCLHFHN+SCPQDLEDIR
Sbjct:  460 GNQGLGAEDRRVIPLSSLANIGPAELYRH-GAPSSRRNLLSWLSIPSSLRRANGDSPVDYRKIQKDKDLDGVD-NGKAGLVEAVPVLALSYWVEGKPRWVGDHPKRLLVMPDSLDSFQRLSHGLRLCCLHFHNYSCPQDLEDIR 601
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig528.13419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G283_ECTSI5.240e-4861.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7W7_9PHAE5.080e-4761.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig528contigL-elsbetiae_contig528:31149..32690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_002110.1
Exons3
Model size545
Cds size441
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig528.13419.1prot_L-elsbetiae_contig528.13419.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig528 31252..32690 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816545.5394177-UTR-L-elsbetiae_contig528:31148..312511622816545.5394177-UTR-L-elsbetiae_contig528:31148..31251Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig528 31149..31251 -
1691683637.197626-UTR-L-elsbetiae_contig528:31148..312511691683637.197626-UTR-L-elsbetiae_contig528:31148..31251Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig528 31149..31251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816545.5529888-CDS-L-elsbetiae_contig528:31251..313931622816545.5529888-CDS-L-elsbetiae_contig528:31251..31393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig528 31252..31393 -
1691683637.2139802-CDS-L-elsbetiae_contig528:31251..313931691683637.2139802-CDS-L-elsbetiae_contig528:31251..31393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig528 31252..31393 -
1622816545.5670588-CDS-L-elsbetiae_contig528:31659..319041622816545.5670588-CDS-L-elsbetiae_contig528:31659..31904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig528 31660..31904 -
1691683637.2281928-CDS-L-elsbetiae_contig528:31659..319041691683637.2281928-CDS-L-elsbetiae_contig528:31659..31904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig528 31660..31904 -
1622816545.5776303-CDS-L-elsbetiae_contig528:32636..326901622816545.5776303-CDS-L-elsbetiae_contig528:32636..32690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig528 32637..32690 -
1691683637.2390354-CDS-L-elsbetiae_contig528:32636..326901691683637.2390354-CDS-L-elsbetiae_contig528:32636..32690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig528 32637..32690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig528.13419.1

>prot_L-elsbetiae_contig528.13419.1 ID=prot_L-elsbetiae_contig528.13419.1|Name=mRNA_L-elsbetiae_contig528.13419.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
KNTRGRSGGEKFEAEDRLVIPLSSLANIGLAEVYQQQSSKGAQSRLSSWL
SRRRGGDVEEVDCKASKSKEFDSLEKHGQGGRLVEVPVLALSYWVNGKPR
WVGDQPKRLLVKPDSLDAFRRLSYGLRLCCLHFHNHSCPQDLEDIR*
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mRNA from alignment at L-elsbetiae_contig528:31149..32690-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig528.13419.1 ID=mRNA_L-elsbetiae_contig528.13419.1|Name=mRNA_L-elsbetiae_contig528.13419.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1542bp|location=Sequence derived from alignment at L-elsbetiae_contig528:31149..32690- (Laminarionema elsbetiae ELsaHSoW15)
AAGAACACACGCGGCAGAAGTGGGGGCGAGAAGTTCGAAGCCGAGGACCG
TCTGGCAAGTATTCTGAATAGCTGGCATGGCCAGCACAAGAGAGGCGCGC
GAAGCGCGCAGCCCAGAGCATGGGAAGGTCGGCGTTGGGCTTCGTCGCAT
GCACTTAACAGATACACAACAGCTCACTCTTATGTACGGAACAACTTTTC
CAGGAATTGTTTGATAAACTTATTGAATCTGTCAAGGGCGCACATGAATT
TTTGTCCCGCACATCCATGCACCCCCCCTCCCTCCCTAGGAGGACCAAAA
ACAAAATCGATTTTTCTCGTTTTTGGTCGTTTGAAAGCCAAATGAAGCTA
CTGTAGCCGCGTAGAGGGGACACCTCTCGTGCCCGCGGGAAGGCTTTTTA
CGCAAAGTTTGAGGTGCCTGGGTGCTCTTATCATGTCATATGTACGAGAA
ATCATGAAGTGGCGGCGAGGGTGTCCGCAAGGGGGGTCGCGGACGTAACG
TGCATGTTTTCCTCCGTGTGTCCCCTCTTTTATATAGGTTTTAGTGTGGC
GTACCCCGCCACCCTCCTGAGAGACCCAAAATAAAGGTATAGGGCGTAGG
TGTCGGGATTTGGTTTTTGTGCGCCCTTGAATCTGTATAATTTCTCACCG
TTTTCCAAGAAGCCGCAGCAAATCAGATTCGCTATTGTTGGTCACCAACG
TTCGGCCCGAGCGTCGGCCCTGTTGCCGTGCCTTGGTCGCGCCACTTTCT
GAACATGTGCTGCTTTCTCCGCCGTCGATGCCTCAGGTTATTCCTTTGAG
CTCTCTGGCTAATATCGGCCTCGCCGAGGTTTACCAACAACAAAGTTCCA
AGGGAGCCCAGAGTCGGTTGTCGTCGTGGCTTTCGCGGAGGCGAGGGGGT
GACGTCGAGGAAGTTGATTGCAAGGCTTCCAAAAGCAAGGAGTTTGACAG
CCTCGAGAAACATGGCCAAGGAGGCCGTTTGGTGGAGGTTCCTGTGCTAG
CCCTCAGCTACTGGGTCAACGGGAAACCCAGGTATCATAAATCTGAACCA
TACTGCGCCAGGATTTGCCCACTATGAACTGTGTAGTTGGCTGCGAGGCC
CGAGTTTTCGAAGAGTATCTACAGCAATTGGCAACACGTGGTTCTGTGGC
ATCTACTTCACTTTCCTCCCTCCCTCCCTCCCTCTCTCCCGTGGCTCGTA
TTCGTGTTTCGTGCTATTTATGTTCCGGCGTACGCATATTACGGTGGGTA
ATTGTCCACCGCTGAAAACGCCGATCAATTTCCCGCATGCCTTTTAGGTG
GGTTGGGGATCAGCCTAAACGTCTTCTTGTCAAGCCCGACAGCTTGGACG
CATTCCGTCGCCTCTCCTACGGTCTCCGTTTGTGCTGTCTCCACTTCCAC
AACCACTCCTGCCCTCAAGATCTCGAGGACATCCGTTGAATATTTGCGCT
CGTAGTCCTCCACGTAGCTTATTCGTCCCAACGTGCGCAATTGTTGCTTT
CTAAGGGATGGCGGCATGGTGTGTCTTGTGTTGTAGTTTCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig528:31149..32690-

>mRNA_L-elsbetiae_contig528.13419.1 ID=mRNA_L-elsbetiae_contig528.13419.1|Name=mRNA_L-elsbetiae_contig528.13419.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig528:31149..32690- (Laminarionema elsbetiae ELsaHSoW15)
AAGAACACACGCGGCAGAAGTGGGGGCGAGAAGTTCGAAGCCGAGGACCG
TCTGAAGAACACACGCGGCAGAAGTGGGGGCGAGAAGTTCGAAGCCGAGG
ACCGTCTGGTTATTCCTTTGAGCTCTCTGGCTAATATCGGCCTCGCCGAG
GTTTACCAACAACAAAGTTCCAAGGGAGCCCAGAGTCGGTTGTCGTCGTG
GCTTTCGCGGAGGCGAGGGGGTGACGTCGAGGAAGTTGATTGCAAGGCTT
CCAAAAGCAAGGAGTTTGACAGCCTCGAGAAACATGGCCAAGGAGGCCGT
TTGGTGGAGGTTCCTGTGCTAGCCCTCAGCTACTGGGTCAACGGGAAACC
CAGGTTATTCCTTTGAGCTCTCTGGCTAATATCGGCCTCGCCGAGGTTTA
CCAACAACAAAGTTCCAAGGGAGCCCAGAGTCGGTTGTCGTCGTGGCTTT
CGCGGAGGCGAGGGGGTGACGTCGAGGAAGTTGATTGCAAGGCTTCCAAA
AGCAAGGAGTTTGACAGCCTCGAGAAACATGGCCAAGGAGGCCGTTTGGT
GGAGGTTCCTGTGCTAGCCCTCAGCTACTGGGTCAACGGGAAACCCAGGT
GGGTTGGGGATCAGCCTAAACGTCTTCTTGTCAAGCCCGACAGCTTGGAC
GCATTCCGTCGCCTCTCCTACGGTCTCCGTTTGTGCTGTCTCCACTTCCA
CAACCACTCCTGCCCTCAAGATCTCGAGGACATCCGTTGAGTGGGTTGGG
GATCAGCCTAAACGTCTTCTTGTCAAGCCCGACAGCTTGGACGCATTCCG
TCGCCTCTCCTACGGTCTCCGTTTGTGCTGTCTCCACTTCCACAACCACT
CCTGCCCTCAAGATCTCGAGGACATCCGTTGA
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