mRNA_L-elsbetiae_contig528.13416.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig528.13416.1
Unique NamemRNA_L-elsbetiae_contig528.13416.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig528.13416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig528contigL-elsbetiae_contig528:14866..16211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size454
Cds size411
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig528.13416.1prot_L-elsbetiae_contig528.13416.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig528 14866..15531 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816545.0416427-CDS-L-elsbetiae_contig528:14865..150361622816545.0416427-CDS-L-elsbetiae_contig528:14865..15036Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig528 14866..15036 -
1691683636.7740881-CDS-L-elsbetiae_contig528:14865..150361691683636.7740881-CDS-L-elsbetiae_contig528:14865..15036Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig528 14866..15036 -
1622816545.0530972-CDS-L-elsbetiae_contig528:15291..155311622816545.0530972-CDS-L-elsbetiae_contig528:15291..15531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig528 15292..15531 -
1691683636.7914188-CDS-L-elsbetiae_contig528:15291..155311691683636.7914188-CDS-L-elsbetiae_contig528:15291..15531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig528 15292..15531 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816545.0660048-UTR-L-elsbetiae_contig528:15531..155361622816545.0660048-UTR-L-elsbetiae_contig528:15531..15536Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig528 15532..15536 -
1691683636.8074398-UTR-L-elsbetiae_contig528:15531..155361691683636.8074398-UTR-L-elsbetiae_contig528:15531..15536Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig528 15532..15536 -
1622816545.078517-UTR-L-elsbetiae_contig528:16175..162111622816545.078517-UTR-L-elsbetiae_contig528:16175..16211Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig528 16176..16211 -
1691683636.818035-UTR-L-elsbetiae_contig528:16175..162111691683636.818035-UTR-L-elsbetiae_contig528:16175..16211Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig528 16176..16211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig528.13416.1

>prot_L-elsbetiae_contig528.13416.1 ID=prot_L-elsbetiae_contig528.13416.1|Name=mRNA_L-elsbetiae_contig528.13416.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp
MMVTDRSLRVLFWLIFVLTCYSDEATDAILAAAGVFSTSANYIPAVTVCI
NTVCLSSKSTSSAPAAEAASSTTDESTPFQCELKHVGKAKRGRAVSVRWV
PQLPSSLLVYKTGPTSIIERSSGEVRRTMVRPCPTIW
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mRNA from alignment at L-elsbetiae_contig528:14866..16211-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig528.13416.1 ID=mRNA_L-elsbetiae_contig528.13416.1|Name=mRNA_L-elsbetiae_contig528.13416.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1346bp|location=Sequence derived from alignment at L-elsbetiae_contig528:14866..16211- (Laminarionema elsbetiae ELsaHSoW15)
CTTGAGCACGGAAACACATTGACGCTTTTTAAGAAGGTGAGAGAGGCGTC
ACGTACATCTTGTTGCCTCATATCTGGAGGGAGAGCGCGAGAAACAAGCT
TCTCGTCAAACTCTGACGATGTATAGCGACGACGGACGCACCGGGCGCGT
GCCAACGCGACCGTATTGTAGCCCGGTTCATAGAGCGCACGCCGCGTGTG
CAGGCCTTCGGGGAGTATTCCCATCGCGGTTCTTGTCCTGGTCATTGGCC
GGGTTTAGGCATGCATAGCACCGGACTAAACCCCAGCTTGACTATAAACC
TCCCCCCCAGATATATGCACGACCCGACCAAATCTTTTTGGATCTCGGCG
ATTGTATCTACATATCTAGTTGATAAATACTTCGTACACAGTTGAAACGG
ACAAAAGGTCGGCCGTATGGAAAGTGTGTGCAAGTTTACAGAGCTTAACT
AGCTGCAGATGGTTCGGTCACAACCCCCATTAAAAAAAAATCTATGACGG
TCAACCGCGGATGGCGCCTATAGATGTTTTTCTGCTTTGGGACTAGTCTA
GATTTTAGAGAGCTAATGTGAGAAGCAGCATGTAACTTCTGCTATTACTG
ATACCACTTCTGCTCTGCGGTCACCGATAATGCTGAATCTCCCTTCTTCC
TGCTTTCCTGCCCCCATCTTAGCAGCTATCATGATGGTGACGGACCGGTC
TCTAAGGGTACTTTTTTGGCTCATATTCGTCCTCACCTGCTACTCCGACG
AGGCAACAGACGCCATCTTGGCTGCCGCTGGAGTGTTCAGCACATCAGCC
AATTACATCCCTGCAGTGACCGTCTGCATCAATACGGTATGCCTCTCCTC
GAAGAGTACATCATCTGCGCCCGCTGCCGAGGCGGCCTCATCCACGACCG
ACGAGAGCACCCCTTTTCAGGTATTCGATGAATGCTACATAGACTAGGGT
CAATGCAGTCTGCCAATACAAACCTATACCGTTCCGGGGAGAATACGAAG
AACAAGTTCTCGTCGCTTTTTTGTGCTCCACATCATTTCTGCTTAATAAT
ATCTACATGTGTAGACGGGCACGGTGCGCAACTCCCGCCTTGATTTGTGA
CGTTTTCCGTCGATTTGATTCTGGTCTGCTTTCTTTCCCCGTTTGCGATT
TCGCTACCCGGTACCATTCGAAAAGTGCGAGCTGAAGCACGTAGGTAAGG
CTAAGAGAGGCCGGGCTGTCTCCGTTCGATGGGTACCCCAGCTGCCGTCT
TCTCTGCTGGTGTACAAGACCGGCCCGACCAGTATCATCGAACGTTCGAG
CGGGGAGGTGAGAAGAACTATGGTCCGTCCGTGCCCAACAATTTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig528:14866..16211-

>mRNA_L-elsbetiae_contig528.13416.1 ID=mRNA_L-elsbetiae_contig528.13416.1|Name=mRNA_L-elsbetiae_contig528.13416.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig528:14866..16211- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGTGACGGACCGGTCTCTAAGGGTACTTTTTTGGCTCATATTCGT
CCTCACCTGCTACTCCGACGAGGCAACAGACGCCATCTTGGCTGCCGCTG
GAGTGTTCAGCACATCAGCCAATTACATCCCTGCAGTGACCGTCTGCATC
AATACGGTATGCCTCTCCTCGAAGAGTACATCATCTGCGCCCGCTGCCGA
GGCGGCCTCATCCACGACCGACGAGAGCACCCCTTTTCAGATGATGGTGA
CGGACCGGTCTCTAAGGGTACTTTTTTGGCTCATATTCGTCCTCACCTGC
TACTCCGACGAGGCAACAGACGCCATCTTGGCTGCCGCTGGAGTGTTCAG
CACATCAGCCAATTACATCCCTGCAGTGACCGTCTGCATCAATACGGTAT
GCCTCTCCTCGAAGAGTACATCATCTGCGCCCGCTGCCGAGGCGGCCTCA
TCCACGACCGACGAGAGCACCCCTTTTCAGTGCGAGCTGAAGCACGTAGG
TAAGGCTAAGAGAGGCCGGGCTGTCTCCGTTCGATGGGTACCCCAGCTGC
CGTCTTCTCTGCTGGTGTACAAGACCGGCCCGACCAGTATCATCGAACGT
TCGAGCGGGGAGGTGAGAAGAACTATGGTCCGTCCGTGCCCAACAATTTG
GTGCGAGCTGAAGCACGTAGGTAAGGCTAAGAGAGGCCGGGCTGTCTCCG
TTCGATGGGTACCCCAGCTGCCGTCTTCTCTGCTGGTGTACAAGACCGGC
CCGACCAGTATCATCGAACGTTCGAGCGGGGAGGTGAGAAGAACTATGGT
CCGTCCGTGCCCAACAATTTGG
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