mRNA_L-elsbetiae_contig5272.13406.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5272.13406.1
Unique NamemRNA_L-elsbetiae_contig5272.13406.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5272.13406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5272contigL-elsbetiae_contig5272:7883..11170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size325
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5272.13406.1prot_L-elsbetiae_contig5272.13406.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5272 7883..11170 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816544.280824-CDS-L-elsbetiae_contig5272:7882..79161622816544.280824-CDS-L-elsbetiae_contig5272:7882..7916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5272 7883..7916 -
1691683636.2075026-CDS-L-elsbetiae_contig5272:7882..79161691683636.2075026-CDS-L-elsbetiae_contig5272:7882..7916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5272 7883..7916 -
1622816544.294041-CDS-L-elsbetiae_contig5272:9284..94121622816544.294041-CDS-L-elsbetiae_contig5272:9284..9412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5272 9285..9412 -
1691683636.2185907-CDS-L-elsbetiae_contig5272:9284..94121691683636.2185907-CDS-L-elsbetiae_contig5272:9284..9412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5272 9285..9412 -
1622816544.3071218-CDS-L-elsbetiae_contig5272:10281..103621622816544.3071218-CDS-L-elsbetiae_contig5272:10281..10362Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5272 10282..10362 -
1691683636.2272718-CDS-L-elsbetiae_contig5272:10281..103621691683636.2272718-CDS-L-elsbetiae_contig5272:10281..10362Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5272 10282..10362 -
1622816544.3172977-CDS-L-elsbetiae_contig5272:11089..111701622816544.3172977-CDS-L-elsbetiae_contig5272:11089..11170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5272 11090..11170 -
1691683636.236039-CDS-L-elsbetiae_contig5272:11089..111701691683636.236039-CDS-L-elsbetiae_contig5272:11089..11170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5272 11090..11170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5272.13406.1

>prot_L-elsbetiae_contig5272.13406.1 ID=prot_L-elsbetiae_contig5272.13406.1|Name=mRNA_L-elsbetiae_contig5272.13406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MTPRFEDEYGCPVDCLTSPNLNVFSSVTGSCFMADGTCDNVCGDGICTGN
DNCESCPRDCGECPLMAGDGICSYPFEAAGLGDCDGSSITNFINFNGEDY
ATIDNAEA
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mRNA from alignment at L-elsbetiae_contig5272:7883..11170-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5272.13406.1 ID=mRNA_L-elsbetiae_contig5272.13406.1|Name=mRNA_L-elsbetiae_contig5272.13406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3288bp|location=Sequence derived from alignment at L-elsbetiae_contig5272:7883..11170- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGCCCAGGTTTGAAGATGAGTACGGCTGCCCTGTGGACTGCCTCAC
TTCGCCGAACCTCAACGTGTTTTCCTCCGTGGTGAGCAGTCAGAGAGTGT
TCGAGGACGACATGGTGGGGGGGTTGCATATGGATGGGTGGTTCGGTGTG
TCGCATGCAGTGCACGGTGCCCCGACCAGAAGTAGACCCTCGCGCGAGTA
CTTTACCCCCAGGAATCGCGAGATAGCTAGCTAGAGATGCATGAACACTG
CTCGTGATAAAAACACAACAGGCAGGCACCGCAGGAGGGGGTACACCCCC
CCCTCCCCCTCCTGTGTAACCCCGGTTGGATCGTCTAGCTAGTCGTATAG
TGGAGGAAGGGGGACAGTGGGTGGGGCAGACGACGAACAGGCCAATAACG
GGAGGAAAAATCAAATAAAAATAGATATTTAGCCGCTTTTATTTTGGGGA
GAAGAAACACGAAAATTGACATCTCGTCGTCGACGCCAAATAAATGTGAA
AAGGGTCAGACGTCTTTCGACGCCAAATGTGAAGAGGGTCAGAGGTCTTC
GACAGACTGTAGGAGATTTATATCCCTCATAAGGGTGTGACCTCCAGAGA
AGGGAGCTATTTGTTTTGCGGGTCGCCTCAACCATGCGCGTGGGGTGCGG
CGTGCCAGTTTGGGCGGTGGGATCTTGAAGAAGCCTCGAGGCCGGACGAG
CCCCCCGCCGGCGCGCGCGCGGGGGGGGGCCGCCGTGGGGGGGTGGCACT
CCTGGCGGTTTTTCGCGTTTTTTTTTTTTTCTCTTGCCTGCGTCGTCCGT
CCGTCCAGACGGGATCGTGCTTCATGGCCGACGGCACTTGCGACAACGTT
TGCGGTGACGGCATCTGCACCGGCAACGACAACTGCGAGGTACAGTAGTA
CAGAAGTGAGAGTAGTCCGTCTTTTTTTTTCTATACCGTGTATTCCCTCC
CACGCCGTGACCACTGTACCGCCGTCTACCGCAGGTGACACAAGATACCA
AACACCCTGGACAGATCTTCCAAAGCTCGTTTCTTCCCCAATCGAGAAGA
GTCCTAGTGCCTAAAGGGGGTGGTGTTGGAAAGATCTAGTCGAGCGCTGT
CCGAAAATATGTCGTTCGGTGCTGGCATCTTTTTCTTCTTCGTTGCGGAG
TTACGGAGCTCCAAAGTTCGGTCCAGGGGGCGTGGTATCTTGTGTCACCT
ACAGTCGCGTCGTGTCGTTTCCATCCTATCGATGGCTGCATATCTATACA
TGTAGCACGCGCGCAACAACAATTCATGCGGTAGATTTAGCATTGCTGCT
GCAGCATCGCTGTTCCTTGACGGCGGTGGCATAAATAGATACACAATCAG
TCAATCAGTGGACCGACCCTTTTCGGATGTAGACTGTGTGTACATAGATA
GGACGTTTCGCCGCGTTCCAAACGAACACGCCAAACAGCAATTAATAGTA
ATGAATAGCACGTGGTGGTCACTGCTGCTGCTGAAGGACCGCCTACGCAG
AAATTAATTTTATACTACTTACTCTAACCCTAACCCTAACCCTAACCCCA
ACCACCGACCCCCCCAAACGGTTTCCATACTTTATCCCATATGTTAGCTT
AAGACAAAAAACCCGCGTAGACGACTGCTGCTGAATGAAGCACGGGGCAT
TGATTGTTTCGACGCCGCGCGCAACCCCGCCCCCCCCCTCCTTCCCTTCC
CGCCCCCCCCCCCCTCCCCCCCCTTCCCGGCGGCGTCGGCGTCGGCGGCG
GAGTGCAGAGCTGCCCTCGCGACTGCGGGGAGTGCCCGCTCATGGCCGGA
GACGGCATCTGCTCCTACCCCTTCGAGGCCGCCGGCCTGGGAGACTGCGA
CGGCTCGTCCATCACCAACTTCATCAACTTCAACGGGTGAGTCAGCAAGC
ACTTCTACAGTGTGTGTGTGTGTGTGTGTGTGTCCTTCCCATTTGTTTTG
GCGACAGTCCCCCCAAGTGGAGACGTGTACTACACCTTGCGGTGTACTTA
GAGGTACTACACTTTGCAGTGCATTTGTCTGTACAACTATAGAACCAACC
GGGGTCACACAAGAGGGGGTGAACACTGGGGCTTTTTCTTCTTTTTTATT
TTCTTTTTTTGCCCCACCTTCCTCCTGCGGTAGATGCCGTAATTGTGCGG
GCTGCATATCGCACACCCCCTGGAACGACTTTTGGGGCTCGATTGCTAAA
TACGACCTCCGAACCAAAGAGAAAAGGGTACCGATATCAAGACGACACGC
TTTCGGATAGCTACATATGTCACCACGGATCAAGCGGATTCTTCTTTCCA
ACGCCACCCTTTTCGCGACCGGCACCGGTATTCCCCTTGCTATCGAGTAG
TAATCGAGCTTTGAAAATCGGGCTAGGGTGTGTGTGTGCGATACATGCAT
ACATAGCCCACACAATTACGGTACGGTACGCGCTGTTCTGGCTTTTTTTT
TTTTCGAAGGTTATATATTACCTCTTGGCAAGCCTGTCATGGCCGGTTCA
GCGTCGCTTCTCGTCCCCGCTTACAGTCGTAATCAGTAGTGGCCTCAGGG
TACATCAGGTCTACATACTACCTACCCTTCCGATTCGGGGAGGAAGTGTT
TTTTCTATGCCGCTTCGCTCCGCTAAAAAATACAGTCGGTGCAACCCCTT
CACTTAAGTGAGCACACCGCTGCTGCTGTTGCGGACCCCGTCGTCTTGAA
ACTTGGCGTTCGTTGTGCCGTGTGCTTATTTCTCTGTTGATGCTATGCGT
ACTTTTTCGAGGGTGTGTTCTGTAGGGTACGGGTACTCTCTGTAGGGTAT
TGGAATAGTCTAATGGTTAAAGAACTCATAGAACTTCTCTGAAAAGAGTA
CTTATACAGAGGGAAAAGTGCCCCCGGTATGGCTTTGTCTTATTAAGAGG
AAAATTCGATACACGTTAGGCCCCAGCATCGGGGGGGGGGCGCGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGCGGGGATGC
GGGGGGGGGGGGGGGGGGTGGGGGTTGAATAACCCCGAACGGGCCCCCCT
ATACTAATTCCTACATAGACACAAATCGAAATTTTGGGTCCCGCGGGGGG
GGCTACGTGTCCAGATTTTTCCTCCAAACAAACCCTTGGGGTACCCTTGT
ACAGAACACCCTTGCGCACTTTCAGTATGTAGCTGTCTCCCTGAAACCGT
CCGTCGTCGCTGCGTGCGTTTCCCGGCGGCCGGCTGCCCCCGCAACAAAA
ACAGAGAGGACTACGCAACGATCGACAACGCAGAGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5272:7883..11170-

>mRNA_L-elsbetiae_contig5272.13406.1 ID=mRNA_L-elsbetiae_contig5272.13406.1|Name=mRNA_L-elsbetiae_contig5272.13406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig5272:7883..11170- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGCCCAGGTTTGAAGATGAGTACGGCTGCCCTGTGGACTGCCTCAC
TTCGCCGAACCTCAACGTGTTTTCCTCCGTGATGACGCCCAGGTTTGAAG
ATGAGTACGGCTGCCCTGTGGACTGCCTCACTTCGCCGAACCTCAACGTG
TTTTCCTCCGTGACGGGATCGTGCTTCATGGCCGACGGCACTTGCGACAA
CGTTTGCGGTGACGGCATCTGCACCGGCAACGACAACTGCGAGACGGGAT
CGTGCTTCATGGCCGACGGCACTTGCGACAACGTTTGCGGTGACGGCATC
TGCACCGGCAACGACAACTGCGAGAGCTGCCCTCGCGACTGCGGGGAGTG
CCCGCTCATGGCCGGAGACGGCATCTGCTCCTACCCCTTCGAGGCCGCCG
GCCTGGGAGACTGCGACGGCTCGTCCATCACCAACTTCATCAACTTCAAC
GGAGCTGCCCTCGCGACTGCGGGGAGTGCCCGCTCATGGCCGGAGACGGC
ATCTGCTCCTACCCCTTCGAGGCCGCCGGCCTGGGAGACTGCGACGGCTC
GTCCATCACCAACTTCATCAACTTCAACGGAGAGGACTACGCAACGATCG
ACAACGCAGAGGCGAGAGGACTACGCAACGATCGACAACGCAGAGGCG
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