mRNA_L-elsbetiae_contig5269.13397.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5269.13397.1
Unique NamemRNA_L-elsbetiae_contig5269.13397.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5269.13397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5269contigL-elsbetiae_contig5269:7641..9924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size320
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816543.284606-CDS-L-elsbetiae_contig5269:7641..78211622816543.284606-CDS-L-elsbetiae_contig5269:7641..7821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5269 7642..7821 -
1691683635.511673-CDS-L-elsbetiae_contig5269:7641..78211691683635.511673-CDS-L-elsbetiae_contig5269:7641..7821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5269 7642..7821 -
1622816543.2952259-CDS-L-elsbetiae_contig5269:9786..99241622816543.2952259-CDS-L-elsbetiae_contig5269:9786..9924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5269 9787..9924 -
1691683635.5212967-CDS-L-elsbetiae_contig5269:9786..99241691683635.5212967-CDS-L-elsbetiae_contig5269:9786..9924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5269 9787..9924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5269.13397.1prot_L-elsbetiae_contig5269.13397.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5269 7642..9924 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5269.13397.1

>prot_L-elsbetiae_contig5269.13397.1 ID=prot_L-elsbetiae_contig5269.13397.1|Name=mRNA_L-elsbetiae_contig5269.13397.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
ATRQPCGSCARRKRVCDGEHPCGGCVEAGLGGHCSFSSKRKSSSSKHQAA
TPRQKHRRESAETLSLLDMSAADPDRARSHGGASSSGGGGGGGHDGRGRS
PHGGSD
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mRNA from alignment at L-elsbetiae_contig5269:7641..9924-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5269.13397.1 ID=mRNA_L-elsbetiae_contig5269.13397.1|Name=mRNA_L-elsbetiae_contig5269.13397.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2284bp|location=Sequence derived from alignment at L-elsbetiae_contig5269:7641..9924- (Laminarionema elsbetiae ELsaHSoW15)
GCCACGCGGCAGCCATGCGGCTCGTGCGCGCGGCGCAAGAGGGTGTGCGA
CGGCGAGCACCCGTGCGGGGGCTGCGTTGAGGCGGGGCTGGGGGGCCACT
GCAGCTTCTCCTCCAAGAGAAAATCCTCCAGCTCGAAGGTGCGCGGTTGT
GGGCTGCGCCGCTTGTACGTGCACCGGCGGTTTTGTAGGCTGTTGCCGTC
GGGGGTCCTGCAAGAGGACGCACGCACGCACGCAAGCGCCCGGACGGGCG
TGTTCCACGATCCACGAGCCCCCTGCCACGCGATCCCATCCCCTGGCGTT
TTTTAATTCATGTATATAAATGTCAGCAGTCTACGCCCGGTTTGTGTGGA
ACAATCGTTTTTTGTATTGTTTTGTTTTTGGGTATCGTAGGGCATTTCTT
TTGATTTTCGGACCCCGCCGGGCGTAGACTCGTCTGTCTGGTTTGGGGGT
CGGGTGGGTTCGTTCTGATTTCGTCTGTCGGCGTGGTCGATGCTTGAGAT
GTCGTAAACTTCTACGGAGTACTACATACATATACTACCTACCTCCTAAA
CGCACTACACACACAGACGCGCGCCCGACGCGGGGAGGGGACTGCAGGCC
GAATCGTAGGTAGTAGATTTCGTAGATTGCCCTCGGGCTGACTACTTTTA
TGAGAGTAGAGGCAGGCGCCATGCCGACTTGAGCCCAGGACGGCGCGGCG
CACAGCGGTACGGTTAAAAGAAAAACAGAAATACGGTGCCCCCTCACCCC
CCGGTCGCAGAAAAAATGCTCGGATGCTGGAATCATCCAGAGAAAGACGC
AGCATCTGTGTACGTATTTTGGGTACGTCCGTATTCTGGGTACACGGCAG
CGTGGTGAAATTTTGATGGGTGGGGGAGGGGCGCCGAAAGCACCCTCTCA
CAAGCGCCTGTTCTTGTTCGGGGGCGGACGCTGTGCTCTCGATGGTTTGA
CCTTGTGTAGCTCTCCTGGAGGGGACTTCTCTCTTGGTTGTTAAAATGGT
TGTTAGTCTTCGTCTTTTTGTCTTGGGGGGGGTTGTCGGTCTCCTGCAAG
TGACAGGCTCGAACTCTTGCCGCCAGCGCACTGCCGTCTGTTAGTCCTCG
CTTGCGCTACTACCGTAGGTGACACAAGATACCACACCCCCTGGACCGAA
TTCTAGAGCTCGATTACTCCGTAACGAAGAAGGTGCCAGCACCAAACGAC
ACATTTTCGAACAGCCCTTGACTAGATCTTTCCAACGCCACCCCTTTTGG
CACTGGCACTCTTCTTGCGGGGGAGGAATCGAGCTTTGAAAATCTGTCCA
GGGGGTGTAGTATCTTGTGTCACCTACGGCAAATGCTGCATGTATTACCA
CGATGGCTGGCTGGGTATCAACAGCCGTTCTCGCAGCATCAAGAGCAGCA
AGTGCGGTCCGCTGCGCGGGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCAGTAACTCTTTTTTTTTTTTTCAAACACAAACCCAGAGTCT
TTCTTGGCTTGTCTGCTCGCCGTCGAAAAGCATGTTTGCCTCATGACTGC
CGTAGCTGCTGAGAGGGCACACACAGTCAGTAGCGTCCAGACGGCGAGCT
GGGCGGACGTGTATAAGGAGAAGTCTCGGTCGACCAAGCCCGCTAGCCGT
GTGTCGATCGATCCCCTCGAGGAGCAGGGCTATCGCGGGCGCCGAGGAAC
CATCGTTAGCGGCCTGATGTAGCTCCACTCAAAAGGCCCCACGAGGCCGC
TGCTGTCGGGGCGGAATCACAGAGGTCACCGCGTCTGTTAGATAGATGCC
ACTGCTGCTGAGGGGCCTCCCTGGCTCCCTGGCGACGGGCCCGCAATCAT
GCAGTGGCAGATGCGGCGGAATAGCGGGGGTGCCGTGCCATCTACGACTT
ACTTGTACGTGTCTTACCCTGAGGAGAAACGCCGCTCCAAGGGGACTGCT
GCTGTTGTGGACACACCCACTAACGAACCAATTTTACTCGCCGCCCCCCC
GATTTTTCGCGCGTTCCTGGCATATATATATATATATACTATACATGGAT
ATATCGTGCTGCGGCGGTCGGCGATCGGTGACTTTTTTTTTCGGGCAAAG
CAGCACCAGGCCGCGACGCCACGCCAGAAGCATCGCCGAGAAAGCGCGGA
GACGCTGTCTCTTCTGGACATGTCGGCGGCCGACCCCGACCGAGCTCGAT
CTCACGGGGGGGCATCGTCCTCCGGCGGCGGCGGCGGCGGCGGCCACGAC
GGTCGGGGGCGCTCTCCTCACGGCGGCAGCGACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5269:7641..9924-

>mRNA_L-elsbetiae_contig5269.13397.1 ID=mRNA_L-elsbetiae_contig5269.13397.1|Name=mRNA_L-elsbetiae_contig5269.13397.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig5269:7641..9924- (Laminarionema elsbetiae ELsaHSoW15)
GCCACGCGGCAGCCATGCGGCTCGTGCGCGCGGCGCAAGAGGGTGTGCGA
CGGCGAGCACCCGTGCGGGGGCTGCGTTGAGGCGGGGCTGGGGGGCCACT
GCAGCTTCTCCTCCAAGAGAAAATCCTCCAGCTCGAAGGCCACGCGGCAG
CCATGCGGCTCGTGCGCGCGGCGCAAGAGGGTGTGCGACGGCGAGCACCC
GTGCGGGGGCTGCGTTGAGGCGGGGCTGGGGGGCCACTGCAGCTTCTCCT
CCAAGAGAAAATCCTCCAGCTCGAAGCACCAGGCCGCGACGCCACGCCAG
AAGCATCGCCGAGAAAGCGCGGAGACGCTGTCTCTTCTGGACATGTCGGC
GGCCGACCCCGACCGAGCTCGATCTCACGGGGGGGCATCGTCCTCCGGCG
GCGGCGGCGGCGGCGGCCACGACGGTCGGGGGCGCTCTCCTCACGGCGGC
AGCGACCACCAGGCCGCGACGCCACGCCAGAAGCATCGCCGAGAAAGCGC
GGAGACGCTGTCTCTTCTGGACATGTCGGCGGCCGACCCCGACCGAGCTC
GATCTCACGGGGGGGCATCGTCCTCCGGCGGCGGCGGCGGCGGCGGCCAC
GACGGTCGGGGGCGCTCTCCTCACGGCGGCAGCGAC
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