mRNA_L-elsbetiae_contig5267.13393.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5267.13393.1
Unique NamemRNA_L-elsbetiae_contig5267.13393.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5267.13393.1 vs. uniprot
Match: A0A6H5JBP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBP7_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.570e-6
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 2 
Query:  266 CRHPACTTTPSY--GLEGSMKREYCAQHAPEGMVNVFSK-RCRHPTCT 400
            C   +C+T  SY  GLEGS   +YCA+HA  GM+NV+SK RCRHP+CT
Sbjct:    6 CSQDSCSTDASYAYGLEGSKTAKYCARHAANGMINVYSKKRCRHPSCT 53
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BLAST of mRNA_L-elsbetiae_contig5267.13393.1 vs. uniprot
Match: D8LCI1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCI1_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 4.960e-6
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 2 
Query:  266 CRHPACTTTPSY--GLEGSMKREYCAQHAPEGMVNVFSK-RCRHPTCT 400
            C    C+T  SY  GLEGS   +YCA+HA  GM+NV+SK RC HP+CT
Sbjct:    6 CSQDGCSTDASYAYGLEGSKTAKYCARHAANGMINVYSKKRCSHPSCT 53
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BLAST of mRNA_L-elsbetiae_contig5267.13393.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 6.120e-6
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 2 
Query:  266 CRHPACTTTPSYGLEGSMKREYCAQHAPEGMVNVFSKRC 382
            C H  CT  P+YG+ GS KRE+C+QHA +GMVNV +KRC
Sbjct:    4 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 42
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BLAST of mRNA_L-elsbetiae_contig5267.13393.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 8.630e-6
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 2 
Query:  266 CRHPACTTTPSYGLEGSMKREYCAQHAPEGMVNVFSKRC 382
            C H  CT  P+YG+ GS KRE+C+QHA +GMVNV +KRC
Sbjct:   64 CGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 102
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5267.13393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JBP7_9PHAE1.570e-658.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCI1_ECTSI4.960e-656.25EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FI73_ECTSI6.120e-661.54EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE8.630e-661.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5267contigL-elsbetiae_contig5267:7341..10113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1722
Cds size1374
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5267.13393.1prot_L-elsbetiae_contig5267.13393.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5267 7600..8973 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816543.0670383-UTR-L-elsbetiae_contig5267:7340..75991622816543.0670383-UTR-L-elsbetiae_contig5267:7340..7599Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5267 7341..7599 +
1691683635.389355-UTR-L-elsbetiae_contig5267:7340..75991691683635.389355-UTR-L-elsbetiae_contig5267:7340..7599Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5267 7341..7599 +
1622816543.0931392-UTR-L-elsbetiae_contig5267:8973..90001622816543.0931392-UTR-L-elsbetiae_contig5267:8973..9000Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5267 8974..9000 +
1691683635.4141371-UTR-L-elsbetiae_contig5267:8973..90001691683635.4141371-UTR-L-elsbetiae_contig5267:8973..9000Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5267 8974..9000 +
1622816543.1066456-UTR-L-elsbetiae_contig5267:10051..101131622816543.1066456-UTR-L-elsbetiae_contig5267:10051..10113Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5267 10052..10113 +
1691683635.425802-UTR-L-elsbetiae_contig5267:10051..101131691683635.425802-UTR-L-elsbetiae_contig5267:10051..10113Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5267 10052..10113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816543.0788891-CDS-L-elsbetiae_contig5267:7599..89731622816543.0788891-CDS-L-elsbetiae_contig5267:7599..8973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5267 7600..8973 +
1691683635.3980424-CDS-L-elsbetiae_contig5267:7599..89731691683635.3980424-CDS-L-elsbetiae_contig5267:7599..8973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5267 7600..8973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5267.13393.1

>prot_L-elsbetiae_contig5267.13393.1 ID=prot_L-elsbetiae_contig5267.13393.1|Name=mRNA_L-elsbetiae_contig5267.13393.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=458bp
MPCRHPACTTTPSYGLEGSMKREYCAQHAPEGMVNVFSKRCRHPTCTEKN
PSYGPAGTKKADFCAQHAQEGMVANKRSTCCSHQGCSKRPSYGVDGTDIA
EFCSPHANEGMVDVRSKRCSHASCKTKPSFGLEGTKETVFCSKHAHGGMV
DICSKRCSHAGCTTRPHHGTEGSRKPVFCSRHAHDGMVNVTSKRCGHPTC
NKIASLGKEGTTKNIEFCAQHATDGMVCLSGLRCAHQGCNKSPSYSAAGS
RTGELCAQRARQGMTSVIKKCAHPSCTTIPSYGIDGTKRAEFCARHAHDG
LVDVISKRCAHKGCRTSPSYGFESRRIKEFCAQHAEEGMSGSWTWGRPCN
AREKRARRSVGKRLRTRATTVVAFKKEAKTSVSVEGRYTRASSKRARLAV
EDNNARVARPDAVVVEAAEREVNAVDDCLSSEPGEEVLARHDQRDEGASE
GMTRGSS*
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mRNA from alignment at L-elsbetiae_contig5267:7341..10113+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5267.13393.1 ID=mRNA_L-elsbetiae_contig5267.13393.1|Name=mRNA_L-elsbetiae_contig5267.13393.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2773bp|location=Sequence derived from alignment at L-elsbetiae_contig5267:7341..10113+ (Laminarionema elsbetiae ELsaHSoW15)
CTGAAAAGTGCAGCAACCCGGGATGCATCAAGCAGGCCACAGATGAAGGT
TTTGGCTTGGATGGTACACGGGAGATGAAGTTTTGTGGTGTGCACGGGGA
GCAGCAAAAAAATGGCGGCGGAACCAATAGGAAGAGATTCACGAGTTTGC
CCGCCCTGGATGCCCCACGAACCCGTCGTACGGAAACGGGAGCAACAAGC
ATGACTCCTACTCCCAGCACGCCGGCCTTGAAGCGGCCGGCGCCACTAGC
AGGAAGAGTATGCCCTGCCGCCATCCAGCTTGCACCACAACACCGTCGTA
CGGCCTGGAAGGCAGCATGAAGCGAGAGTATTGCGCGCAGCATGCTCCGG
AGGGAATGGTCAACGTCTTCAGCAAGCGGTGCAGGCATCCAACTTGCACT
GAAAAGAACCCGTCATACGGCCCGGCAGGCACCAAGAAGGCGGACTTCTG
CGCGCAGCATGCTCAGGAGGGAATGGTCGCCAACAAAAGGAGCACATGCT
GCAGCCATCAAGGGTGCAGCAAAAGGCCATCCTACGGCGTTGACGGAACC
GACATCGCAGAGTTTTGCAGCCCCCACGCCAACGAGGGCATGGTTGACGT
CCGCAGCAAAAGGTGCAGCCATGCAAGTTGTAAGACCAAGCCATCATTCG
GCTTGGAAGGAACCAAAGAAACCGTTTTCTGCTCTAAACACGCTCATGGT
GGAATGGTGGACATCTGCAGCAAGAGGTGTAGCCACGCAGGGTGTACCAC
CCGGCCCCACCATGGCACTGAAGGCAGTAGAAAACCCGTATTTTGCAGCC
GACATGCGCACGATGGAATGGTTAATGTCACCAGCAAGAGATGCGGGCAC
CCAACTTGTAATAAAATCGCGTCACTCGGCAAGGAAGGCACCACCAAGAA
CATAGAGTTCTGCGCCCAACACGCCACAGATGGAATGGTCTGTTTATCGG
GCTTGAGATGTGCTCACCAGGGTTGCAACAAGTCGCCGTCATATTCTGCG
GCCGGGAGCCGCACGGGGGAGTTGTGCGCTCAGCGCGCAAGACAAGGAAT
GACCAGCGTGATTAAGAAATGCGCCCACCCAAGTTGCACCACAATCCCGT
CGTACGGCATAGACGGTACCAAGAGAGCCGAGTTTTGCGCCCGCCATGCC
CACGACGGTTTGGTCGACGTGATCAGTAAGAGATGCGCACACAAAGGGTG
TCGAACATCTCCGTCGTACGGGTTCGAATCGCGCCGCATCAAGGAGTTTT
GTGCCCAGCATGCGGAGGAAGGGATGTCAGGGAGTTGGACGTGGGGCCGG
CCCTGCAACGCTCGCGAAAAGAGGGCTCGTCGTAGCGTGGGTAAGCGGTT
GAGAACCCGTGCTACGACCGTTGTTGCCTTCAAAAAAGAGGCAAAGACAT
CTGTTTCGGTAGAGGGCCGATACACGCGGGCAAGCAGCAAGCGAGCACGC
CTGGCCGTCGAAGATAACAACGCTCGTGTGGCTCGCCCGGATGCAGTCGT
GGTAGAGGCGGCTGAACGAGAGGTGAACGCCGTCGACGATTGTTTATCGT
CGGAGCCGGGCGAAGAGGTATTGGCGCGCCACGACCAGAGAGATGAGGGT
GCGTCGGAGGGGATGACCAGAGGCTCCTCCTAACACAGAGAAAGCCGCGC
GGAAACGAGGGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTTGCATTTCAT
ACGTATTGCTGCTGTTGACATTCATGGGTGCGTTCAAGTGCTAGCAAGTT
TTCTGGCATGTGCACTGCTGCTGGCTTCGCTACTACTGGCGTGCGTGTGC
ACACAGCTCGCAGTTGTTAGGCTCATGTTCAGGAGATGGATTGTCCAGTC
ATAAGGGCACCATGGAGTCTGACGGCACTGCCTGTCAAATTAGAAGAGGC
GTCCTCCTCCTTTTTGTCAACGATCTTTCGTGCCAGGCCCTCTTTCCTGC
AAATATTCCTCAAAGCACAGCGTCCAAAATAGGTGATCCCTTTGATTCGT
GGTGATTATTCTGTGTGGCCCGACCGGGGTGTAGTCCCTCCTGGGTAGCT
AGGGCTCGGCCGCAGATTGACGGTACCGTGCGGCAGACGGTTTGTGCGTG
ACCAAATGTTTACTACAAAGGGCCAGGTAACGTTTCCGCCGGGCCGAGCG
AAGGTGAAATGTTTCTGTGTTCGTCGTGAACTCTCATACCCACATATCGA
ATAGTTTTGTAATGGTTACTCGTTTCGACAAGGAAACAAAACGTTAACGG
CTGAAAATATCAAATTGAGGTAGACCGCAGCGTAGGGACATGCATATGGA
GTACCAGTATCGTATCTTTGGTGTTATTTTCGTGCTTGAGGGATCAGTTT
TTCCCCAATAAAAATGATAAAGATTGTGGACCTCAAAGGGGTCTTATGTA
TTATTTTTTCCTGGGAGTGAGCCGAATCGTTCTATTTTAAGCATAATCCA
CTGTTTTTCATGTTGCGCGTCCGATTTCGTTTGTATTTACGTTTGTAGTG
CTCACGCGATCCCAGCATAGAAACTGGTTGCGAAAAGCAAAAATATACGG
AGTATCCCGATTGCTCATGGCGCGCATATGCCGAACCAGCGGTCTAAGGT
TATCGTAGTTGTCCTCTCCCCTACAAGCTAGGTCTAGAAGCTGTTTCTAT
GCGCTTACTCACTGAAGCATTTTGCTCCCGTCTTTTTTGGTGCTTTTCCA
TGCAAAAACAGGTTGATCGAATTTGCGGGCAGGCAGCGACGAAAATATGG
CGACAAGGTGCTGCTAGGAGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5267:7341..10113+

>mRNA_L-elsbetiae_contig5267.13393.1 ID=mRNA_L-elsbetiae_contig5267.13393.1|Name=mRNA_L-elsbetiae_contig5267.13393.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2748bp|location=Sequence derived from alignment at L-elsbetiae_contig5267:7341..10113+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCTGCCGCCATCCAGCTTGCACCACAACACCGTCGTACGGCCTGGA
AGGCAGCATGAAGCGAGAGTATTGCGCGCAGCATGCTCCGGAGGGAATGG
TCAACGTCTTCAGCAAGCGGTGCAGGCATCCAACTTGCACTGAAAAGAAC
CCGTCATACGGCCCGGCAGGCACCAAGAAGGCGGACTTCTGCGCGCAGCA
TGCTCAGGAGGGAATGGTCGCCAACAAAAGGAGCACATGCTGCAGCCATC
AAGGGTGCAGCAAAAGGCCATCCTACGGCGTTGACGGAACCGACATCGCA
GAGTTTTGCAGCCCCCACGCCAACGAGGGCATGGTTGACGTCCGCAGCAA
AAGGTGCAGCCATGCAAGTTGTAAGACCAAGCCATCATTCGGCTTGGAAG
GAACCAAAGAAACCGTTTTCTGCTCTAAACACGCTCATGGTGGAATGGTG
GACATCTGCAGCAAGAGGTGTAGCCACGCAGGGTGTACCACCCGGCCCCA
CCATGGCACTGAAGGCAGTAGAAAACCCGTATTTTGCAGCCGACATGCGC
ACGATGGAATGGTTAATGTCACCAGCAAGAGATGCGGGCACCCAACTTGT
AATAAAATCGCGTCACTCGGCAAGGAAGGCACCACCAAGAACATAGAGTT
CTGCGCCCAACACGCCACAGATGGAATGGTCTGTTTATCGGGCTTGAGAT
GTGCTCACCAGGGTTGCAACAAGTCGCCGTCATATTCTGCGGCCGGGAGC
CGCACGGGGGAGTTGTGCGCTCAGCGCGCAAGACAAGGAATGACCAGCGT
GATTAAGAAATGCGCCCACCCAAGTTGCACCACAATCCCGTCGTACGGCA
TAGACGGTACCAAGAGAGCCGAGTTTTGCGCCCGCCATGCCCACGACGGT
TTGGTCGACGTGATCAGTAAGAGATGCGCACACAAAGGGTGTCGAACATC
TCCGTCGTACGGGTTCGAATCGCGCCGCATCAAGGAGTTTTGTGCCCAGC
ATGCGGAGGAAGGGATGTCAGGGAGTTGGACGTGGGGCCGGCCCTGCAAC
GCTCGCGAAAAGAGGGCTCGTCGTAGCGTGGGTAAGCGGTTGAGAACCCG
TGCTACGACCGTTGTTGCCTTCAAAAAAGAGGCAAAGACATCTGTTTCGG
TAGAGGGCCGATACACGCGGGCAAGCAGCAAGCGAGCACGCCTGGCCGTC
GAAGATAACAACGCTCGTGTGGCTCGCCCGGATGCAGTCGTGGTAGAGGC
GGCTGAACGAGAGGTGAACGCCGTCGACGATTGTTTATCGTCGGAGCCGG
GCGAAGAGGTATTGGCGCGCCACGACCAGAGAGATGAGGGTGCGTCGGAG
GGGATGACCAGAGGCTCCTCCTAAATGCCCTGCCGCCATCCAGCTTGCAC
CACAACACCGTCGTACGGCCTGGAAGGCAGCATGAAGCGAGAGTATTGCG
CGCAGCATGCTCCGGAGGGAATGGTCAACGTCTTCAGCAAGCGGTGCAGG
CATCCAACTTGCACTGAAAAGAACCCGTCATACGGCCCGGCAGGCACCAA
GAAGGCGGACTTCTGCGCGCAGCATGCTCAGGAGGGAATGGTCGCCAACA
AAAGGAGCACATGCTGCAGCCATCAAGGGTGCAGCAAAAGGCCATCCTAC
GGCGTTGACGGAACCGACATCGCAGAGTTTTGCAGCCCCCACGCCAACGA
GGGCATGGTTGACGTCCGCAGCAAAAGGTGCAGCCATGCAAGTTGTAAGA
CCAAGCCATCATTCGGCTTGGAAGGAACCAAAGAAACCGTTTTCTGCTCT
AAACACGCTCATGGTGGAATGGTGGACATCTGCAGCAAGAGGTGTAGCCA
CGCAGGGTGTACCACCCGGCCCCACCATGGCACTGAAGGCAGTAGAAAAC
CCGTATTTTGCAGCCGACATGCGCACGATGGAATGGTTAATGTCACCAGC
AAGAGATGCGGGCACCCAACTTGTAATAAAATCGCGTCACTCGGCAAGGA
AGGCACCACCAAGAACATAGAGTTCTGCGCCCAACACGCCACAGATGGAA
TGGTCTGTTTATCGGGCTTGAGATGTGCTCACCAGGGTTGCAACAAGTCG
CCGTCATATTCTGCGGCCGGGAGCCGCACGGGGGAGTTGTGCGCTCAGCG
CGCAAGACAAGGAATGACCAGCGTGATTAAGAAATGCGCCCACCCAAGTT
GCACCACAATCCCGTCGTACGGCATAGACGGTACCAAGAGAGCCGAGTTT
TGCGCCCGCCATGCCCACGACGGTTTGGTCGACGTGATCAGTAAGAGATG
CGCACACAAAGGGTGTCGAACATCTCCGTCGTACGGGTTCGAATCGCGCC
GCATCAAGGAGTTTTGTGCCCAGCATGCGGAGGAAGGGATGTCAGGGAGT
TGGACGTGGGGCCGGCCCTGCAACGCTCGCGAAAAGAGGGCTCGTCGTAG
CGTGGGTAAGCGGTTGAGAACCCGTGCTACGACCGTTGTTGCCTTCAAAA
AAGAGGCAAAGACATCTGTTTCGGTAGAGGGCCGATACACGCGGGCAAGC
AGCAAGCGAGCACGCCTGGCCGTCGAAGATAACAACGCTCGTGTGGCTCG
CCCGGATGCAGTCGTGGTAGAGGCGGCTGAACGAGAGGTGAACGCCGTCG
ACGATTGTTTATCGTCGGAGCCGGGCGAAGAGGTATTGGCGCGCCACGAC
CAGAGAGATGAGGGTGCGTCGGAGGGGATGACCAGAGGCTCCTCCTAA
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