mRNA_L-elsbetiae_contig5256.13379.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5256.13379.1
Unique NamemRNA_L-elsbetiae_contig5256.13379.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Match: D7G2W6_ECTSI (Putative growth-on protein GRO10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2W6_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.690e-29
Identity = 68/110 (61.82%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    1 ESLPMLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASCFLLTNCTVPSDLYLAFSPWFVCVFCVRVGYFIFMVAGYAVGLLMANMAVYVMAMGQ 330
            ESLPMLLELPR+WDYTGGYAMLGLGDIVIPGLLLSFAHRYD S   + +H                                GYF+FMVAGYAVGLLMANMAVYVM+MGQ
Sbjct:  508 ESLPMLLELPRLWDYTGGYAMLGLGDIVIPGLLLSFAHRYDLS---VGLHWGK-----------------------------GYFVFMVAGYAVGLLMANMAVYVMSMGQ 585          
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Match: A0A7S2H102_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H102_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.640e-20
Identity = 56/109 (51.38%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    4 SLPMLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASCFLLTNCTVPSDLYLAFSPWFVCVFCVRVGYFIFMVAGYAVGLLMANMAVYVMAMGQ 330
             LPMLLELPR++DYTGGY MLGLGDIV+PGLL+SFA RYD S R                       A  PW           +I MV GY++GL+MAN+AVYVM MGQ
Sbjct:  493 ELPMLLELPRIFDYTGGYTMLGLGDIVLPGLLVSFAIRYDVSKR-----------------------ARVPW----------NYILMVIGYSIGLMMANVAVYVMNMGQ 568          
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Match: A0A7S2KC43_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KC43_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.910e-19
Identity = 57/112 (50.89%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 ESLPMLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASCFLLTNCT--VPSDLYLAFSPWFVCVFCVRVGYFIFMVAGYAVGLLMANMAVYVMAMGQ 330
            E LPML  +PRV DY GG +MLGLGDIV+PGLLLSFA R+D + R + +       + N    V S+     S W +C  C + GYF  +V  YAVGL MAN AVY+M MGQ
Sbjct:  496 EPLPMLFAIPRVGDYQGGASMLGLGDIVLPGLLLSFASRFDEAKRLMGLVSGGAGRVRNGAGGVSSNK----SSWNICCGCGQGGYFGPVVVAYAVGLAMANAAVYLMQMGQ 603          
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Match: A0A7S2BZ12_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BZ12_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 9.430e-19
Identity = 54/109 (49.54%), Postives = 62/109 (56.88%), Query Frame = 1
Query:    4 SLPMLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASCFLLTNCTVPSDLYLAFSPWFVCVFCVRVGYFIFMVAGYAVGLLMANMAVYVMAMGQ 330
             LPMLL LPR+ DYTGGY MLGLGDIV+PGLL++FA RYD S                         A  PW           F+ MV GY+VGL+MAN+AVYVM MGQ
Sbjct:  114 ELPMLLLLPRIDDYTGGYTMLGLGDIVLPGLLVAFAARYDVSIG-----------------------ARIPW----------NFLIMVGGYSVGLMMANVAVYVMEMGQ 189          
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Match: B8CBC3_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBC3_THAPS)

HSP 1 Score: 89.0 bits (219), Expect = 2.870e-18
Identity = 54/111 (48.65%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 ESLPMLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASCFLLTNCTVP-SDLYLAFSPWFVCVFCVRVGYFIFMVAGYAVGLLMANMAVYVMAMGQ 330
            + LPML  +PR+ DY GG +MLGLGDIV+PGLLLSFA RYD + R I +       + N   P +      SP      C R GYF  ++  YA+GL MAN AVY+M MGQ
Sbjct:  681 DPLPMLFAIPRIGDYQGGCSMLGLGDIVLPGLLLSFASRYDEAKRLIGVIGGGSGRMRNNACPDATQQQKLSPLCFLCCCCRQGYFGPVMVAYAIGLAMANAAVYIMQMGQ 791          
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Match: B7FP84_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FP84_PHATC)

HSP 1 Score: 85.1 bits (209), Expect = 5.850e-17
Identity = 55/108 (50.93%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    7 LPMLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASCFLLTNCTVPSDLYLAFSPWFVCVFCVRVGYFIFMVAGYAVGLLMANMAVYVMAMGQ 330
            LPMLL +PR++D+ GG ++LGLGDIV+PGLLLSFA R+D + R + +       LT+       Y        C  C   GYF  MVA YAVGLLMANMAV +M MGQ
Sbjct:  310 LPMLLTIPRLFDFEGGSSLLGLGDIVLPGLLLSFAARFDAAKRMMGVMGGGSGSLTSYHCQERRYCCS-----CGLCSG-GYFPPMVAAYAVGLLMANMAVQIMHMGQ 411          
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Match: W7TAM5_9STRA (Signal peptide peptidase-aspartyl protease family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAM5_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.330e-17
Identity = 56/111 (50.45%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 ESLPMLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASCFLLTNCTVPSDLYLAFSPWFVCVFCVRVG-YFIFMVAGYAVGLLMANMAVYVMAMGQ 330
            + LPMLL LPR+ DY GG+ MLGLGDI++PGLL++FA RYD   R + + L                 AF        C R G YF  MV GYA+GLLMAN+AVYVM MGQ
Sbjct:  531 DMLPMLLVLPRINDYAGGFTMLGLGDIILPGLLVAFAARYD---RAMGVEL----------------FAFHK------CGREGRYFRLMVIGYALGLLMANVAVYVMKMGQ 616          
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Match: A0A7S4MHZ3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MHZ3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 8.780e-17
Identity = 59/114 (51.75%), Postives = 70/114 (61.40%), Query Frame = 1
Query:    1 ESLPMLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASCFL--LTNC-TVPSDLYLAFSPWFVCVFCV-RVGYFIFMVAGYAVGLLMANMAVYVMAMGQ 330
            + LPMLL +PRV DY GG ++LGLGDIV+PGLLLSFA R+D S R I +      +     C T P    L    +  C  C+   GYF  +V  YAVGLLMAN AVYVM MGQ
Sbjct:  661 DPLPMLLTVPRVNDYAGGSSLLGLGDIVLPGLLLSFAARFDESKRLIGLIGGGNGVNRSNTCQTSPQSKSLFGGLFLGCCACLCNGGYFPPVVVSYAVGLLMANTAVYVMQMGQ 774          
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Match: A0A1E7F6H4_9STRA (Peptidase_A22B-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F6H4_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.010e-16
Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    1 ESLPMLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASCFLLTNCTVPSDLYLAFSPWFVCVFCVRVGYFIFMVAGYAVGLLMANMAVYVMAMGQ 330
            + +PML  +PR++DY GG +MLGLGDIV+PGLLLSFA R D + R ++   +  +   + T+P  +    S W+  +F     YF+ ++  YA+GL MAN AVY+M MGQ
Sbjct:  570 DPMPMLFSIPRLFDYQGGASMLGLGDIVLPGLLLSFAARLDAA-RLVYTLYSKKYGQVD-TIPPPM----SAWYALLFGGYGYYFVPLMISYAIGLFMANAAVYIMNMGQ 673          
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Match: A0A7S4RX33_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RX33_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.090e-16
Identity = 54/114 (47.37%), Postives = 69/114 (60.53%), Query Frame = 1
Query:    1 ESLPMLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASCFLLTNC---TVPSDLYLAFSP-WFVCVFCVRVGYFIFMVAGYAVGLLMANMAVYVMAMGQ 330
            + LPMLL +PR+ DY  G ++LGLGDIV+PGLLLSFA R+D + + +          TN    T P D     SP   +C      GYF+ +V  YA+GLL AN+AVYVM MGQ
Sbjct:  530 DPLPMLLTVPRIADYQQGASLLGLGDIVLPGLLLSFAARFDEAKKLVGFMRTGSATPTNRSPHTCPPD-----SPAGRICGLLCNGGYFVPLVIAYAIGLLCANIAVYVMNMGQ 638          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5256.13379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2W6_ECTSI1.690e-2961.82Putative growth-on protein GRO10 n=2 Tax=Ectocarpu... [more]
A0A7S2H102_9STRA2.640e-2051.38Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2KC43_9STRA5.910e-1950.89Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S2BZ12_9STRA9.430e-1949.54Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
B8CBC3_THAPS2.870e-1848.65Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
B7FP84_PHATC5.850e-1750.93Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
W7TAM5_9STRA6.330e-1750.45Signal peptide peptidase-aspartyl protease family ... [more]
A0A7S4MHZ3_9STRA8.780e-1751.75Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1E7F6H4_9STRA3.010e-1644.55Peptidase_A22B-domain-containing protein n=1 Tax=F... [more]
A0A7S4RX33_9STRA4.090e-1647.37Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5256contigL-elsbetiae_contig5256:11472..12219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue2.9e-22
Seed eggNOG ortholog2880.D7G2W6
KEGG koko:K09596,ko:K09597,ko:K09598
Hectar predicted targeting categoryother localisation
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG2442@2759,KOG2443@1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons3
Model size345
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5256.13379.1prot_L-elsbetiae_contig5256.13379.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5256 11472..12207 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816541.6164021-CDS-L-elsbetiae_contig5256:11471..115711622816541.6164021-CDS-L-elsbetiae_contig5256:11471..11571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5256 11472..11571 -
1691683634.3068795-CDS-L-elsbetiae_contig5256:11471..115711691683634.3068795-CDS-L-elsbetiae_contig5256:11471..11571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5256 11472..11571 -
1622816541.6269171-CDS-L-elsbetiae_contig5256:11669..117891622816541.6269171-CDS-L-elsbetiae_contig5256:11669..11789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5256 11670..11789 -
1691683634.3216398-CDS-L-elsbetiae_contig5256:11669..117891691683634.3216398-CDS-L-elsbetiae_contig5256:11669..11789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5256 11670..11789 -
1622816541.6369457-CDS-L-elsbetiae_contig5256:12094..122071622816541.6369457-CDS-L-elsbetiae_contig5256:12094..12207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5256 12095..12207 -
1691683634.3329804-CDS-L-elsbetiae_contig5256:12094..122071691683634.3329804-CDS-L-elsbetiae_contig5256:12094..12207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5256 12095..12207 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816541.6472535-UTR-L-elsbetiae_contig5256:12207..122191622816541.6472535-UTR-L-elsbetiae_contig5256:12207..12219Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5256 12208..12219 -
1691683634.3440096-UTR-L-elsbetiae_contig5256:12207..122191691683634.3440096-UTR-L-elsbetiae_contig5256:12207..12219Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5256 12208..12219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5256.13379.1

>prot_L-elsbetiae_contig5256.13379.1 ID=prot_L-elsbetiae_contig5256.13379.1|Name=mRNA_L-elsbetiae_contig5256.13379.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MLLELPRVWDYTGGYAMLGLGDIVIPGLLLSFAHRYDFSYRNIHMHLASC
FLLTNCTVPSDLYLAFSPWFVCVFCVRVGYFIFMVAGYAVGLLMANMAVY
VMAMGQVTKQ*
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mRNA from alignment at L-elsbetiae_contig5256:11472..12219-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5256.13379.1 ID=mRNA_L-elsbetiae_contig5256.13379.1|Name=mRNA_L-elsbetiae_contig5256.13379.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=748bp|location=Sequence derived from alignment at L-elsbetiae_contig5256:11472..12219- (Laminarionema elsbetiae ELsaHSoW15)
GAGAGCCTACCGATGCTGCTGGAGCTGCCGAGAGTATGGGACTACACCGG GGGCTACGCGATGCTTGGACTCGGAGATATCGTCATCCCTGGGCTGCTGC TGTCCTTCGCTCATCGCTACGACTTGTCCGTGAGTCACCAAGTTTAAATA AGCGCCTTCCCCCTCTGCCCCAATATCGTACTCTCTCTCTCTCTCTCTCT CTTTCTCTCTGTGACCATCCCTTACTGCTACAAACCCTCCACTGTAAATC TTCCTCTCTCTCTCTGACCACCCCTTACTGATACAAACCCTCCACCGTAA TCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCCCTTAAGTGGTCGAGCGGGCGGGGTTTAGGGTGTGTGCTCTGAT TTTTGTGCGCGGTCTGAATCCCCCCATCAGCTCATATCGCAACATACATA TGCATCTCGCCTCGTGTTTTCTGCTTACCAACTGTACTGTACCTTCGGAC CTTTATCTTGCTTTTTCGCCGTGGTTCGTGTGTGTCTTTTGCGTGCGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTTTTTTCTTTTTCAGGCCGGGCTTGGGTTAACGAGAG GGTACTTCATCTTCATGGTGGCGGGATACGCGGTGGGGCTGCTGATGGCC AACATGGCTGTGTACGTCATGGCCATGGGACAGGTGACCAAGCAATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5256:11472..12219-

>mRNA_L-elsbetiae_contig5256.13379.1 ID=mRNA_L-elsbetiae_contig5256.13379.1|Name=mRNA_L-elsbetiae_contig5256.13379.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig5256:11472..12219- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCTGGAGCTGCCGAGAGTATGGGACTACACCGGGGGCTACGCGAT
GCTTGGACTCGGAGATATCGTCATCCCTGGGCTGCTGCTGTCCTTCGCTC
ATCGCTACGACTTATGCTGCTGGAGCTGCCGAGAGTATGGGACTACACCG
GGGGCTACGCGATGCTTGGACTCGGAGATATCGTCATCCCTGGGCTGCTG
CTGTCCTTCGCTCATCGCTACGACTTCTCATATCGCAACATACATATGCA
TCTCGCCTCGTGTTTTCTGCTTACCAACTGTACTGTACCTTCGGACCTTT
ATCTTGCTTTTTCGCCGTGGTTCGTGTGTGTCTTTTGCGTGCGTGTCTCA
TATCGCAACATACATATGCATCTCGCCTCGTGTTTTCTGCTTACCAACTG
TACTGTACCTTCGGACCTTTATCTTGCTTTTTCGCCGTGGTTCGTGTGTG
TCTTTTGCGTGCGTGTAGGGTACTTCATCTTCATGGTGGCGGGATACGCG
GTGGGGCTGCTGATGGCCAACATGGCTGTGTACGTCATGGCCATGGGACA
GGTGACCAAGCAATGAAGGGTACTTCATCTTCATGGTGGCGGGATACGCG
GTGGGGCTGCTGATGGCCAACATGGCTGTGTACGTCATGGCCATGGGACA
GGTGACCAAGCAATGA
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