mRNA_L-elsbetiae_contig5245.13364.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5245.13364.1
Unique NamemRNA_L-elsbetiae_contig5245.13364.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5245.13364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5245contigL-elsbetiae_contig5245:7328..8285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size327
Cds size225
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5245.13364.1prot_L-elsbetiae_contig5245.13364.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5245 7428..8285 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816539.8749027-UTR-L-elsbetiae_contig5245:7327..74271622816539.8749027-UTR-L-elsbetiae_contig5245:7327..7427Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5245 7328..7427 -
1691683632.999983-UTR-L-elsbetiae_contig5245:7327..74271691683632.999983-UTR-L-elsbetiae_contig5245:7327..7427Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5245 7328..7427 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816539.8872652-CDS-L-elsbetiae_contig5245:7427..74311622816539.8872652-CDS-L-elsbetiae_contig5245:7427..7431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5245 7428..7431 -
1691683633.009792-CDS-L-elsbetiae_contig5245:7427..74311691683633.009792-CDS-L-elsbetiae_contig5245:7427..7431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5245 7428..7431 -
1622816539.9004807-CDS-L-elsbetiae_contig5245:8064..82851622816539.9004807-CDS-L-elsbetiae_contig5245:8064..8285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5245 8065..8285 -
1691683633.0222528-CDS-L-elsbetiae_contig5245:8064..82851691683633.0222528-CDS-L-elsbetiae_contig5245:8064..8285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5245 8065..8285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5245.13364.1

>prot_L-elsbetiae_contig5245.13364.1 ID=prot_L-elsbetiae_contig5245.13364.1|Name=mRNA_L-elsbetiae_contig5245.13364.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
RVKIKSVAYAAPSSLFSLSSSPSLYSRLYLLKPCSKLVEARTEPLSCRGA
GGSPNGRTPVVVHGARGVVPTISR*
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mRNA from alignment at L-elsbetiae_contig5245:7328..8285-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5245.13364.1 ID=mRNA_L-elsbetiae_contig5245.13364.1|Name=mRNA_L-elsbetiae_contig5245.13364.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=958bp|location=Sequence derived from alignment at L-elsbetiae_contig5245:7328..8285- (Laminarionema elsbetiae ELsaHSoW15)
CGCGTAAAGATCAAGAGTGTTGCATATGCCGCCCCCTCCTCTCTCTTTTC
ACTCTCTTCGTCGCCGTCCCTGTATTCGAGACTTTATTTGCTGAAACCTT
GCTCTAAGCTGGTGGAAGCCCGAACTGAGCCTCTAAGCTGCCGCGGCGCT
GGTGGAAGCCCGAACGGCCGAACGCCGGTTGTTGTGCACGGAGCTAGGGG
GGTGGTGCCGACCATATCGAGGTGCGCCCAAGGCAACGCTTTGTGTTCTG
CCATTGCCGTTCGTTTGATAGTGCTCGACATTGACTATTGGCGGGATCAG
CCATTTCTCCCACCGCGAAACATCCATTTGACAAAATCACAGAGCGTCTA
TAACTGCAGTACATATGATGTATCAGGATCAGAGTTCGTTCGGAAGCAAC
TGCCACGTGACGGACCGAGACATCTTCCCTCTGTCAACGGAAGCATTCTT
GATAATTAAAAAAGATACGACCCGAGTCGTGACCACCCGGTACCAAAAAA
TGAAGGCTGCAACTTTGGGAATATTATGGGTAATTTGCGGCCCTTTGTAG
AAATGCTCCGCAACGTTGCGTGGATGCTTTTTCCTCTCGGGGCCTTCCCC
ATGTCCCCCACTGCCTCATATTGATTGGCAGGTATCTATAGTGATATTTC
CACCAGGCCATGCAAATACCAAAAAAACCAAGCGAAGTGTTTCATGCTGA
TGGCTGTTGTCTTTAGCGCGGCACCATGGGCTTAAAACTACGGCTGGCTG
CGACGAACGGCCAACCTACTGCAAAGCCCGATGCGAAAAGAACGGAGGCG
CGACCCCATGGCTCCTCTGTTTGCGCAATGTTATTGTGCCGCGTTCGCCG
TCAGGTGATATGCTGTTCAGGCTCATGTCCACCACCAACACCGAACCGTG
GGAGGTGTCGCTCGGCATTAAAGTCTCCAGGCGCGGAGGATGCGGAGGGA
GGAAAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5245:7328..8285-

>mRNA_L-elsbetiae_contig5245.13364.1 ID=mRNA_L-elsbetiae_contig5245.13364.1|Name=mRNA_L-elsbetiae_contig5245.13364.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig5245:7328..8285- (Laminarionema elsbetiae ELsaHSoW15)
CGCGTAAAGATCAAGAGTGTTGCATATGCCGCCCCCTCCTCTCTCTTTTC
ACTCTCTTCGTCGCCGTCCCTGTATTCGAGACTTTATTTGCTGAAACCTT
GCTCTAAGCTGGTGGAAGCCCGAACTGAGCCTCTAAGCTGCCGCGGCGCT
GGTGGAAGCCCGAACGGCCGAACGCCGGTTGTTGTGCACGGAGCTAGGGG
GGTGGTGCCGACCATATCGAGCGCGTAAAGATCAAGAGTGTTGCATATGC
CGCCCCCTCCTCTCTCTTTTCACTCTCTTCGTCGCCGTCCCTGTATTCGA
GACTTTATTTGCTGAAACCTTGCTCTAAGCTGGTGGAAGCCCGAACTGAG
CCTCTAAGCTGCCGCGGCGCTGGTGGAAGCCCGAACGGCCGAACGCCGGT
TGTTGTGCACGGAGCTAGGGGGGTGGTGCCGACCATATCGAGGTGAGTGA
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