mRNA_L-elsbetiae_contig524.13358.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig524.13358.1
Unique NamemRNA_L-elsbetiae_contig524.13358.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig524.13358.1 vs. uniprot
Match: D8LJW0_ECTSI (ARL3, ARF-like Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJW0_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 1.720e-71
Identity = 129/202 (63.86%), Postives = 132/202 (65.35%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITHIMPTQLGFRDVDWCGRTPSISRLFQKAPSGRLPPASNPTPVDCYSQRPTTLTSKSTACCGRIPWLTSLGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDEVTAQIKTSLLEEEKLGGIPVLIFANKQDLLSALSSDEV 606
            MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITHIMPTQ                                                               GFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDE   ++   LLEEEKL GIPVLIFANKQDLLSALSSDE+
Sbjct:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITHIMPTQ---------------------------------------------------------------GFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDETGVELG-QLLEEEKLAGIPVLIFANKQDLLSALSSDEI 138
[Close]
BLAST of mRNA_L-elsbetiae_contig524.13358.1 vs. uniprot
Match: A0A835ZEJ4_9STRA (ARL3, ARF-like ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ4_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.920e-63
Identity = 116/202 (57.43%), Postives = 129/202 (63.86%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITHIMPTQLGFRDVDWCGRTPSISRLFQKAPSGRLPPASNPTPVDCYSQRPTTLTSKSTACCGRIPWLTSLGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDEVTAQIKTSLLEEEKLGGIPVLIFANKQDLLSALSSDEV 606
            MGLLTLLRKLKR+DQEARILVLGLDNAGKTTILKKLSEEDIT IMPTQ                                                               GFNIKSLMH++FKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSAD+RRM+E T +    LLEE+KL  +PVLI+ANKQDL+SA++ DE+
Sbjct:    1 MGLLTLLRKLKRTDQEARILVLGLDNAGKTTILKKLSEEDITSIMPTQ---------------------------------------------------------------GFNIKSLMHDEFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADKRRMEE-TGEELGQLLEEDKLSEVPVLIYANKQDLMSAMAPDEI 138
[Close]
BLAST of mRNA_L-elsbetiae_contig524.13358.1 vs. uniprot
Match: A0A7S0MCU9_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MCU9_9CRYP)

HSP 1 Score: 200 bits (508), Expect = 3.340e-62
Identity = 112/202 (55.45%), Postives = 128/202 (63.37%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITHIMPTQLGFRDVDWCGRTPSISRLFQKAPSGRLPPASNPTPVDCYSQRPTTLTSKSTACCGRIPWLTSLGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDEVTAQIKTSLLEEEKLGGIPVLIFANKQDLLSALSSDEV 606
            MGLLTLLRKLKR+D+EARILVLGLDNAGKTTILKKL++EDITH MPTQ                                                               GFNIKS++HE FKLNVWDIGGQK+IRPYWRNYFDQTDAL+YVID AD RRMDE + ++ + LLEEEKL G+PVLIFANKQDL +A+S D+V
Sbjct:    1 MGLLTLLRKLKRTDKEARILVLGLDNAGKTTILKKLADEDITHTMPTQ---------------------------------------------------------------GFNIKSVVHEGFKLNVWDIGGQKTIRPYWRNYFDQTDALVYVIDCADPRRMDETSVEL-SQLLEEEKLKGVPVLIFANKQDLANAMSPDQV 138
[Close]
BLAST of mRNA_L-elsbetiae_contig524.13358.1 vs. uniprot
Match: A0A7S0LYW6_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LYW6_9CRYP)

HSP 1 Score: 198 bits (503), Expect = 2.320e-61
Identity = 109/202 (53.96%), Postives = 129/202 (63.86%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITHIMPTQLGFRDVDWCGRTPSISRLFQKAPSGRLPPASNPTPVDCYSQRPTTLTSKSTACCGRIPWLTSLGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDEVTAQIKTSLLEEEKLGGIPVLIFANKQDLLSALSSDEV 606
            MGLLTLLRKLKR+D+EARILVLGLDNAGKTT LK+L++EDITH MPTQ                                                               GFNIKS++HE FKLNVWDIGGQKSIRPYWRNYFDQTDA++YVID ADRRR+DE   +++ +LLEEEKL G+PVLIFANK+DL++A+S DE+
Sbjct:    7 MGLLTLLRKLKRTDKEARILVLGLDNAGKTTALKRLADEDITHTMPTQ---------------------------------------------------------------GFNIKSVVHEGFKLNVWDIGGQKSIRPYWRNYFDQTDAMVYVIDCADRRRIDETGVELQ-ALLEEEKLAGVPVLIFANKKDLMNAMSPDEL 144
[Close]
BLAST of mRNA_L-elsbetiae_contig524.13358.1 vs. uniprot
Match: A0A7S3HPP9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPP9_9STRA)

HSP 1 Score: 194 bits (494), Expect = 4.740e-60
Identity = 109/202 (53.96%), Postives = 127/202 (62.87%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITHIMPTQLGFRDVDWCGRTPSISRLFQKAPSGRLPPASNPTPVDCYSQRPTTLTSKSTACCGRIPWLTSLGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDEVTAQIKTSLLEEEKLGGIPVLIFANKQDLLSALSSDEV 606
            MGLLTLLRKLK+SDQEAR+LVLGLDN+GKTTILKKLS+EDI+ IMPTQ                                                               GFNIKSLMH+ FKLNVWDIGGQKSIRPYWRNY+DQTDALIYVIDSADRRRM+E   +++  LL+EEKL  +P+LI ANKQDL++AL+  E+
Sbjct:    1 MGLLTLLRKLKKSDQEARLLVLGLDNSGKTTILKKLSDEDISQIMPTQ---------------------------------------------------------------GFNIKSLMHDGFKLNVWDIGGQKSIRPYWRNYYDQTDALIYVIDSADRRRMEETGVELQ-QLLDEEKLANVPLLIMANKQDLMNALTPGEI 138
[Close]
BLAST of mRNA_L-elsbetiae_contig524.13358.1 vs. uniprot
Match: A0A7R9YCL1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCL1_9STRA)

HSP 1 Score: 194 bits (494), Expect = 6.960e-60
Identity = 109/202 (53.96%), Postives = 126/202 (62.38%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITHIMPTQLGFRDVDWCGRTPSISRLFQKAPSGRLPPASNPTPVDCYSQRPTTLTSKSTACCGRIPWLTSLGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDEVTAQIKTSLLEEEKLGGIPVLIFANKQDLLSALSSDEV 606
            MGLL LLRKLK +D+EARILVLGLDNAGKTTILKKLS+ED+ HIMPTQ                                                               GFNIKSLMH +FKLNVWDIGGQKSIRPYWRNYFDQTDAL+YVIDSADRRR++E   ++   LL+E+KL G+PVLIFANKQDL++A S +E+
Sbjct:    1 MGLLNLLRKLKSTDREARILVLGLDNAGKTTILKKLSDEDVNHIMPTQ---------------------------------------------------------------GFNIKSLMHAEFKLNVWDIGGQKSIRPYWRNYFDQTDALVYVIDSADRRRLEETGVELG-QLLQEDKLLGVPVLIFANKQDLINAASDEEL 138
[Close]
BLAST of mRNA_L-elsbetiae_contig524.13358.1 vs. uniprot
Match: A0A7S0YMS3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YMS3_9CRYP)

HSP 1 Score: 192 bits (487), Expect = 5.130e-59
Identity = 106/202 (52.48%), Postives = 127/202 (62.87%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITHIMPTQLGFRDVDWCGRTPSISRLFQKAPSGRLPPASNPTPVDCYSQRPTTLTSKSTACCGRIPWLTSLGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDEVTAQIKTSLLEEEKLGGIPVLIFANKQDLLSALSSDEV 606
            MGLLTLLRKLK++D+EARILVLGLDNAGKTT LKKL++EDIT  MPTQ                                                               GFNIKS++H+ FKLNVWDIGGQK+IRPYWRNYFDQTDAL+YVID +DRRRMDE   ++ T LLEEE+L G+P+L+FANKQDLL+A++ D+V
Sbjct:    1 MGLLTLLRKLKKTDKEARILVLGLDNAGKTTALKKLADEDITTTMPTQ---------------------------------------------------------------GFNIKSVIHDGFKLNVWDIGGQKTIRPYWRNYFDQTDALVYVIDCSDRRRMDETGVELNT-LLEEEQLAGVPLLLFANKQDLLNAMAPDDV 138
[Close]
BLAST of mRNA_L-elsbetiae_contig524.13358.1 vs. uniprot
Match: A0A7S1G4R5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4R5_9STRA)

HSP 1 Score: 192 bits (487), Expect = 9.100e-59
Identity = 107/202 (52.97%), Postives = 126/202 (62.38%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITHIMPTQLGFRDVDWCGRTPSISRLFQKAPSGRLPPASNPTPVDCYSQRPTTLTSKSTACCGRIPWLTSLGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDEVTAQIKTSLLEEEKLGGIPVLIFANKQDLLSALSSDEV 606
            MGLL+LLRKL R+D+EARILVLGLDNAGKTTILKKLS+EDITHIMPTQ                                                               GFNIKSLMH+ FKLNVWDIGGQK+IRPYWRNY++ TDALI+VIDSADRRR++E   ++  +L EE+KL G+P L+FANKQDLLSA S+ E+
Sbjct:   10 MGLLSLLRKLHRTDKEARILVLGLDNAGKTTILKKLSDEDITHIMPTQ---------------------------------------------------------------GFNIKSLMHDGFKLNVWDIGGQKTIRPYWRNYYESTDALIFVIDSADRRRLEEAGNEL-AALFEEDKLAGVPALVFANKQDLLSAQSASEI 147
[Close]
BLAST of mRNA_L-elsbetiae_contig524.13358.1 vs. uniprot
Match: L1JN43_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JN43_GUITC)

HSP 1 Score: 190 bits (482), Expect = 2.940e-58
Identity = 105/202 (51.98%), Postives = 124/202 (61.39%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITHIMPTQLGFRDVDWCGRTPSISRLFQKAPSGRLPPASNPTPVDCYSQRPTTLTSKSTACCGRIPWLTSLGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDEVTAQIKTSLLEEEKLGGIPVLIFANKQDLLSALSSDEV 606
            MGLLTLLRKLK+S++E RILVLGLDNAGKTT LKKL++EDITH MPTQ                                                               GFNIKS++HE FKLNVWDIGGQK+IRPYWRNYFDQTDAL++VID +D RRMDE   ++   LL+EEKL G+P+LIFANKQDL++A+  DEV
Sbjct:    1 MGLLTLLRKLKKSEKEFRILVLGLDNAGKTTALKKLADEDITHTMPTQ---------------------------------------------------------------GFNIKSVIHEGFKLNVWDIGGQKTIRPYWRNYFDQTDALVFVIDCSDHRRMDETGVELN-QLLDEEKLAGVPLLIFANKQDLMNAMGPDEV 138
[Close]
BLAST of mRNA_L-elsbetiae_contig524.13358.1 vs. uniprot
Match: A0A7J7PXL4_9CHLO (ARF-like GTPase n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A7J7PXL4_9CHLO)

HSP 1 Score: 189 bits (481), Expect = 3.910e-58
Identity = 107/202 (52.97%), Postives = 125/202 (61.88%), Query Frame = 1 
Query:    1 MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITHIMPTQLGFRDVDWCGRTPSISRLFQKAPSGRLPPASNPTPVDCYSQRPTTLTSKSTACCGRIPWLTSLGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDALIYVIDSADRRRMDEVTAQIKTSLLEEEKLGGIPVLIFANKQDLLSALSSDEV 606
            MGLL LLRKL++S+ EARILVLGLDNAGKTTILKKLS+EDI+ IMPTQ                                                               GFNIKSLMH+ FKLNVWDIGGQKSIRPYWRN FD TDAL+YVIDSADR+R+DE   ++   LLEEEK+ G+PVL+ ANKQDLL+ALS+D++
Sbjct:    1 MGLLALLRKLRKSEGEARILVLGLDNAGKTTILKKLSDEDISTIMPTQ---------------------------------------------------------------GFNIKSLMHDGFKLNVWDIGGQKSIRPYWRNNFDSTDALVYVIDSADRKRIDECGVEL-AQLLEEEKMNGVPVLVLANKQDLLAALSADDI 138
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig524.13358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJW0_ECTSI1.720e-7163.86ARL3, ARF-like Ras superfamily GTPase n=2 Tax=Ecto... [more]
A0A835ZEJ4_9STRA1.920e-6357.43ARL3, ARF-like ras superfamily GTPase n=1 Tax=Trib... [more]
A0A7S0MCU9_9CRYP3.340e-6255.45Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S0LYW6_9CRYP2.320e-6153.96Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S3HPP9_9STRA4.740e-6053.96Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7R9YCL1_9STRA6.960e-6053.96Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S0YMS3_9CRYP5.130e-5952.48Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S1G4R5_9STRA9.100e-5952.97Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
L1JN43_GUITC2.940e-5851.98Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7J7PXL4_9CHLO3.910e-5852.97ARF-like GTPase n=2 Tax=Scenedesmaceae TaxID=3086 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig524contigL-elsbetiae_contig524:36274..38016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.2
Seed ortholog evalue5.6e-56
Seed eggNOG ortholog2880.D8LJW0
Preferred nameARL3
KEGG koko:K07944,ko:K07977,ko:K11278
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000166,GO:0000278,GO:0000281,GO:0000910,GO:0001655,GO:0001763,GO:0001822,GO:0001882,GO:0001883,GO:0002009,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0005881,GO:0005929,GO:0005930,GO:0006810,GO:0006892,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007264,GO:0007275,GO:0007399,GO:0007424,GO:0008017,GO:0008092,GO:0008150,GO:0009653,GO:0009888,GO:0009987,GO:0010970,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0022008,GO:0022402,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030496,GO:0030705,GO:0031090,GO:0031503,GO:0031984,GO:0032391,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032838,GO:0035146,GO:0035147,GO:0035239,GO:0035295,GO:0035556,GO:0035639,GO:0035869,GO:0036064,GO:0036094,GO:0042073,GO:0042461,GO:0042995,GO:0043005,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0046530,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051301,GO:0051641,GO:0051649,GO:0051716,GO:0060271,GO:0060429,GO:0060446,GO:0060541,GO:0060562,GO:0061138,GO:0061640,GO:0065007,GO:0070925,GO:0071840,GO:0072001,GO:0097014,GO:0097159,GO:0097367,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0098588,GO:0098791,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901265,GO:1901363,GO:1903047
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0074@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04031
Ec32 ortholog descriptionARL3, ARF-like Ras superfamily GTPase
Ec32 orthologEc-01_009870.1
Exons4
Model size606
Cds size606
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig524.13358.1prot_L-elsbetiae_contig524.13358.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig524 36274..38016 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816539.1986804-CDS-L-elsbetiae_contig524:36273..364171622816539.1986804-CDS-L-elsbetiae_contig524:36273..36417Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig524 36274..36417 +
1691683632.4790108-CDS-L-elsbetiae_contig524:36273..364171691683632.4790108-CDS-L-elsbetiae_contig524:36273..36417Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig524 36274..36417 +
1622816539.2167408-CDS-L-elsbetiae_contig524:36980..371691622816539.2167408-CDS-L-elsbetiae_contig524:36980..37169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig524 36981..37169 +
1691683632.4917874-CDS-L-elsbetiae_contig524:36980..371691691683632.4917874-CDS-L-elsbetiae_contig524:36980..37169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig524 36981..37169 +
1622816539.2287838-CDS-L-elsbetiae_contig524:37236..374191622816539.2287838-CDS-L-elsbetiae_contig524:37236..37419Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig524 37237..37419 +
1691683632.5028877-CDS-L-elsbetiae_contig524:37236..374191691683632.5028877-CDS-L-elsbetiae_contig524:37236..37419Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig524 37237..37419 +
1622816539.2389345-CDS-L-elsbetiae_contig524:37926..380161622816539.2389345-CDS-L-elsbetiae_contig524:37926..38016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig524 37927..38016 +
1691683632.513101-CDS-L-elsbetiae_contig524:37926..380161691683632.513101-CDS-L-elsbetiae_contig524:37926..38016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig524 37927..38016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig524.13358.1

>prot_L-elsbetiae_contig524.13358.1 ID=prot_L-elsbetiae_contig524.13358.1|Name=mRNA_L-elsbetiae_contig524.13358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=202bp
MGLLTLLRKLKRSDQEARILVLGLDNAGKTTILKKLSEEDITHIMPTQLG
FRDVDWCGRTPSISRLFQKAPSGRLPPASNPTPVDCYSQRPTTLTSKSTA
CCGRIPWLTSLGFNIKSLMHEDFKLNVWDIGGQKSIRPYWRNYFDQTDAL
IYVIDSADRRRMDEVTAQIKTSLLEEEKLGGIPVLIFANKQDLLSALSSD
EV
back to top

mRNA from alignment at L-elsbetiae_contig524:36274..38016+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig524.13358.1 ID=mRNA_L-elsbetiae_contig524.13358.1|Name=mRNA_L-elsbetiae_contig524.13358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1743bp|location=Sequence derived from alignment at L-elsbetiae_contig524:36274..38016+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCTGTTGACGTTGCTTCGTAAGCTCAAGAGAAGCGACCAGGAAGC
TCGCATCTTGGTATTGGGTTTGGACAACGCGGGCAAGACCACGATCCTCA
AGAAGCTCTCAGAAGAGGACATTACGCACATCATGCCCACACAGGTACAA
GCCAAACATCATATTCCGTGTGCTTCTTGGAGGTGACTAGGTGTGGCGAG
CATTGTTGGAGGGGGTGGTGGGCTTTGCTTGCTGTGTACACCGGAGAGTA
GACCATCTTATTTTGTGCATCGAGTGGAGGTTTACGACATAGACTATGTA
CATGTAGTGCGTAAGAACAAAGATGTTGAGTGCTTCTCGAACCTATGGTG
CTTCACATTTATATATATGGACAGGACATGCTTATCCCAAACGATGCAGT
GCATTAGGTGAGGTGTATGCAGCAGGAATCGAAGAGCTTCCTCAGATATC
AATGGTGAAGCCCACAGCACTACATATGTACGACATCAACTCCGTACTAC
TAGACTCTACCAGCACGTACATATCTAGACTAGACTACTGCTGTAGATAG
TCTAACCCGGTGTGATCGGAATATTTAAAACATATACGTCTTGTTCGGTC
ACACCTTTCCGATCACTTGATGAAATATATCGCCCTATCTTTCCCTCTCC
TAGGTTGAAGCCACGGATCCCAAACTACGGAAGAATTTGACCGACGGTAT
CCATCAGTTGGGGTTTCGAGATGTGGACTGGTGTGGTCGCACCCCGTCCA
TATCTAGATTGTTTCAGAAGGCACCGTCAGGAAGGCTTCCGCCGGCGTCT
AACCCCACGCCTGTAGATTGTTACTCCCAAAGGCCCACGACCCTCACCAG
CAAATCAACTGCTTGCTGTGGACGTATTCCCTGGTTGACTTCCCTGGTTG
ACTGTCACTTCTTCTCCCCTCTCGTTCTCCGTCCTACCTTTCCAACCCCC
GGCGGCCTGACAGGGCTTCAACATCAAGAGTCTGATGCACGAGGATTTCA
AGCTGAACGTTTGGGATATCGGAGGGCAGAAGTCCATTCGGCCGTACTGG
CGCAACTACTTCGACCAGACTGACGCCCTTATTTACGTTATCGACAGCGC
TGACAGGCGGCGTATGGATGAGGTGACTGCCCAAATCAAAACGTCTGTGA
ATTGGGTACCGGTGCTTCAGCGGTAGAGTCAGCGGGAATGCACTTTGTAG
CCTATCCGGGACAAATATACCGCAAACCAGCTGACCGATACTTCGTACCT
GGTGAATGTTGGCATGCTGTAGCAGTACCTAGTTTAGACCCCTATTTGAC
GTAATTTTGGCGCCGATGATCTGGTTAAGTGTATCGTGAAACGTCACAGC
ACACACCCCATACGTTCAGCAAATCGTGATTCTAACCCTACTTTGAAGAA
AGCATGCCGTTTCGTACATGACTGTATGCGTGTGCGTCGACGAGGAAGGA
CGTTCCACACCTGCGCTGAGGCAAACGCTTAAGAGTAACAGCCGAGGTTT
GACGATTCATCCCAACAATCAGAACCTACGATTTAACGCCCTATCGTCAA
AGCACCCAGCATCAATCCTTCCCTTGGTGTTCTGGCTATGTACGTCGCCT
GCCATTCTCCTCTCGGACGACGCGGGAAACAGACGGGAGTTGAGTTAGGG
CAGCTTCTGGAGGAAGAGAAGCTCGGAGGTATCCCGGTGCTCATTTTCGC
GAACAAACAAGACCTTCTCAGTGCCCTGTCTTCGGACGAGGTA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig524:36274..38016+

>mRNA_L-elsbetiae_contig524.13358.1 ID=mRNA_L-elsbetiae_contig524.13358.1|Name=mRNA_L-elsbetiae_contig524.13358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1212bp|location=Sequence derived from alignment at L-elsbetiae_contig524:36274..38016+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCTGTTGACGTTGCTTCGTAAGCTCAAGAGAAGCGACCAGGAAGC
TCGCATCTTGGTATTGGGTTTGGACAACGCGGGCAAGACCACGATCCTCA
AGAAGCTCTCAGAAGAGGACATTACGCACATCATGCCCACACAGATGGGG
CTGTTGACGTTGCTTCGTAAGCTCAAGAGAAGCGACCAGGAAGCTCGCAT
CTTGGTATTGGGTTTGGACAACGCGGGCAAGACCACGATCCTCAAGAAGC
TCTCAGAAGAGGACATTACGCACATCATGCCCACACAGTTGGGGTTTCGA
GATGTGGACTGGTGTGGTCGCACCCCGTCCATATCTAGATTGTTTCAGAA
GGCACCGTCAGGAAGGCTTCCGCCGGCGTCTAACCCCACGCCTGTAGATT
GTTACTCCCAAAGGCCCACGACCCTCACCAGCAAATCAACTGCTTGCTGT
GGACGTATTCCCTGGTTGACTTCCCTGTTGGGGTTTCGAGATGTGGACTG
GTGTGGTCGCACCCCGTCCATATCTAGATTGTTTCAGAAGGCACCGTCAG
GAAGGCTTCCGCCGGCGTCTAACCCCACGCCTGTAGATTGTTACTCCCAA
AGGCCCACGACCCTCACCAGCAAATCAACTGCTTGCTGTGGACGTATTCC
CTGGTTGACTTCCCTGGGCTTCAACATCAAGAGTCTGATGCACGAGGATT
TCAAGCTGAACGTTTGGGATATCGGAGGGCAGAAGTCCATTCGGCCGTAC
TGGCGCAACTACTTCGACCAGACTGACGCCCTTATTTACGTTATCGACAG
CGCTGACAGGCGGCGTATGGATGAGGTGACTGCCCAAATCAAAACGTCTG
GCTTCAACATCAAGAGTCTGATGCACGAGGATTTCAAGCTGAACGTTTGG
GATATCGGAGGGCAGAAGTCCATTCGGCCGTACTGGCGCAACTACTTCGA
CCAGACTGACGCCCTTATTTACGTTATCGACAGCGCTGACAGGCGGCGTA
TGGATGAGGTGACTGCCCAAATCAAAACGTCTCTTCTGGAGGAAGAGAAG
CTCGGAGGTATCCCGGTGCTCATTTTCGCGAACAAACAAGACCTTCTCAG
TGCCCTGTCTTCGGACGAGGTACTTCTGGAGGAAGAGAAGCTCGGAGGTA
TCCCGGTGCTCATTTTCGCGAACAAACAAGACCTTCTCAGTGCCCTGTCT
TCGGACGAGGTA
back to top