mRNA_L-elsbetiae_contig5219.13324.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5219.13324.1
Unique NamemRNA_L-elsbetiae_contig5219.13324.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5219.13324.1 vs. uniprot
Match: A0A6H5JWZ4_9PHAE (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWZ4_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 4.190e-20
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 SELFLERFATQAFGHAEKLGRKTIKYRDVSDIRVKDPNLLFLEAVVPP 144
            SE+FLE+FA +AF HAEKLGRKTIKYRDVSD+R++DPNLLFLEAVVPP
Sbjct:  166 SEIFLEKFAARAFDHAEKLGRKTIKYRDVSDVRLEDPNLLFLEAVVPP 213
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BLAST of mRNA_L-elsbetiae_contig5219.13324.1 vs. uniprot
Match: D8LBX1_ECTSI (Histone-like transcription factor family (CBF/NF-Y) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX1_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.270e-19
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 SELFLERFATQAFGHAEKLGRKTIKYRDVSDIRVKDPNLLFLEAVVPP 144
            SE+FLE+ A +AF HAEKLGRKTIKYRDVSD+RV+DPNLLFLEAVVPP
Sbjct:  170 SEIFLEKLAARAFDHAEKLGRKTIKYRDVSDVRVEDPNLLFLEAVVPP 217
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BLAST of mRNA_L-elsbetiae_contig5219.13324.1 vs. uniprot
Match: A0A6V1PCP5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PCP5_HETAK)

HSP 1 Score: 59.7 bits (143), Expect = 7.790e-10
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    7 LFLERFATQAFGHAEKLGRKTIKYRDVSDIRVKDPNLLFLEAVVP 141
            LFLE+FA  +F  A+  G K I+Y DV+D RV DPNLLFLE V+P
Sbjct:  107 LFLEKFAQDSFAKAQTRGAKMIRYEDVADARVSDPNLLFLEGVIP 151
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5219.13324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JWZ4_9PHAE4.190e-2083.33CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ec... [more]
D8LBX1_ECTSI1.270e-1983.33Histone-like transcription factor family (CBF/NF-Y... [more]
A0A6V1PCP5_HETAK7.790e-1060.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5219contigL-elsbetiae_contig5219:7012..7158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionDPB3 class protein with histone-like transcription factor (NF-YC subunit) domain
Ec32 orthologEc-20_003590.1
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816536.00438-CDS-L-elsbetiae_contig5219:7011..71581622816536.00438-CDS-L-elsbetiae_contig5219:7011..7158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5219 7012..7158 -
1691683630.3151417-CDS-L-elsbetiae_contig5219:7011..71581691683630.3151417-CDS-L-elsbetiae_contig5219:7011..7158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5219 7012..7158 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5219.13324.1prot_L-elsbetiae_contig5219.13324.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5219 7012..7158 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5219.13324.1

>prot_L-elsbetiae_contig5219.13324.1 ID=prot_L-elsbetiae_contig5219.13324.1|Name=mRNA_L-elsbetiae_contig5219.13324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=49bp
SELFLERFATQAFGHAEKLGRKTIKYRDVSDIRVKDPNLLFLEAVVPP*
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mRNA from alignment at L-elsbetiae_contig5219:7012..7158-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5219.13324.1 ID=mRNA_L-elsbetiae_contig5219.13324.1|Name=mRNA_L-elsbetiae_contig5219.13324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=147bp|location=Sequence derived from alignment at L-elsbetiae_contig5219:7012..7158- (Laminarionema elsbetiae ELsaHSoW15)
AGCGAGCTTTTCCTGGAGAGGTTTGCAACGCAGGCGTTCGGCCACGCCGA
GAAGCTCGGGCGCAAGACAATAAAGTACCGAGACGTGAGCGACATCCGCG
TGAAGGACCCCAACCTCTTGTTCTTAGAGGCGGTCGTGCCTCCCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5219:7012..7158-

>mRNA_L-elsbetiae_contig5219.13324.1 ID=mRNA_L-elsbetiae_contig5219.13324.1|Name=mRNA_L-elsbetiae_contig5219.13324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=294bp|location=Sequence derived from alignment at L-elsbetiae_contig5219:7012..7158- (Laminarionema elsbetiae ELsaHSoW15)
AGCGAGCTTTTCCTGGAGAGGTTTGCAACGCAGGCGTTCGGCCACGCCGA
GAAGCTCGGGCGCAAGACAATAAAGTACCGAGACGTGAGCGACATCCGCG
TGAAGGACCCCAACCTCTTGTTCTTAGAGGCGGTCGTGCCTCCCTAGAGC
GAGCTTTTCCTGGAGAGGTTTGCAACGCAGGCGTTCGGCCACGCCGAGAA
GCTCGGGCGCAAGACAATAAAGTACCGAGACGTGAGCGACATCCGCGTGA
AGGACCCCAACCTCTTGTTCTTAGAGGCGGTCGTGCCTCCCTAG
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