mRNA_L-elsbetiae_contig5213.13316.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5213.13316.1
Unique NamemRNA_L-elsbetiae_contig5213.13316.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5213.13316.1 vs. uniprot
Match: D7FZW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW0_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 7.090e-22
Identity = 47/63 (74.60%), Postives = 52/63 (82.54%), Query Frame = 3 
Query:    3 YACYAELPSDMRPHAGDVLAFKTLSLNEETWTPELSAYRTAQVAAFDTSSSIVRVFPVSVEDD 191
            Y  Y ELP+DMRP   DVLAFKTLSLNEETWTPELS YRTA+V AFDTSS +VR+ P S+EDD
Sbjct:  176 YVVYEELPTDMRPQVCDVLAFKTLSLNEETWTPELSPYRTAEVTAFDTSSGLVRLLPASIEDD 238
[Close]
BLAST of mRNA_L-elsbetiae_contig5213.13316.1 vs. uniprot
Match: A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 6.760e-20
Identity = 48/73 (65.75%), Postives = 52/73 (71.23%), Query Frame = 3 
Query:    3 YACYAELPSDMRPHAGDVLAFKTLSLNEETWTPELSAYRTAQVAAFDTSSSIVRVFPVSVEDDKVLRGDASGG 221
            Y  Y ELP+DMRP   DVLAFKTLSLNEETWTPELS YR A+V AFD SS +VR+ P S EDD    G A  G
Sbjct:  637 YVGYEELPTDMRPQVRDVLAFKTLSLNEETWTPELSPYRMAEVIAFDASSGLVRLRPASTEDDNKDGGGAGSG 709
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5213.13316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZW0_ECTSI7.090e-2274.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4H0_9PHAE6.760e-2065.75Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5213contigL-elsbetiae_contig5213:1073..2417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size397
Cds size393
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5213.13316.1prot_L-elsbetiae_contig5213.13316.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5213 1076..2417 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816535.4516294-UTR-L-elsbetiae_contig5213:1072..10751622816535.4516294-UTR-L-elsbetiae_contig5213:1072..1075Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5213 1073..1075 +
1691683629.9925056-UTR-L-elsbetiae_contig5213:1072..10751691683629.9925056-UTR-L-elsbetiae_contig5213:1072..1075Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5213 1073..1075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816535.4635994-CDS-L-elsbetiae_contig5213:1075..12001622816535.4635994-CDS-L-elsbetiae_contig5213:1075..1200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5213 1076..1200 +
1691683630.0017707-CDS-L-elsbetiae_contig5213:1075..12001691683630.0017707-CDS-L-elsbetiae_contig5213:1075..1200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5213 1076..1200 +
1622816535.4796705-CDS-L-elsbetiae_contig5213:2149..24171622816535.4796705-CDS-L-elsbetiae_contig5213:2149..2417Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5213 2150..2417 +
1691683630.010956-CDS-L-elsbetiae_contig5213:2149..24171691683630.010956-CDS-L-elsbetiae_contig5213:2149..2417Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5213 2150..2417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5213.13316.1

>prot_L-elsbetiae_contig5213.13316.1 ID=prot_L-elsbetiae_contig5213.13316.1|Name=mRNA_L-elsbetiae_contig5213.13316.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
MPATRSSPATCARTQGTCSPSRPCPSTRKPGRRSSRPIARRRWPPSTRLP
ASCVYFRFRLRTTRSFEAMLAAAMVPLPADSGVSNKSSSEKAAAVMAQRL
ACAPGERGSGRGARATAKTLPLPPPPARANT
back to top

mRNA from alignment at L-elsbetiae_contig5213:1073..2417+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5213.13316.1 ID=mRNA_L-elsbetiae_contig5213.13316.1|Name=mRNA_L-elsbetiae_contig5213.13316.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1345bp|location=Sequence derived from alignment at L-elsbetiae_contig5213:1073..2417+ (Laminarionema elsbetiae ELsaHSoW15)
GGTATGCCTGCTACGCGGAGCTCCCCAGCGACATGCGCCCGCACGCAGGG
GACGTGCTCGCCTTCAAGACCCTGTCCCTCAACGAGGAAACCTGGACGCC
GGAGCTCTCGGCCTATCGCACGGCGCAGGTGCGGTGCAAATATCTCGTGT
GTTGTTCGTTTTTTCGTTTGTTTGTTTGTGTGTTTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCGCGTTGAAGGCTTCCTTTGCTCTGTTTTGTGCT
CCCTCCGAGGCGCTGGCTATGGGCTGCGTTGTTCCGAAAGGCTGTACTGT
GCTATTCTGTGTTATGTTGCCATCGCCCAGTGCTGCGGTGGACGGTCAAG
AGGATTCTGCTGGTTGTTGGGTGCACCGCTTTTGGCCGTGATTTTTTGTT
TTGGTGTTGCGGGGGGTGTTTGTTGAGCTGTTTGGTCGAGCTGCACGCGT
TCGTTTAGACGGGCGCGTTTTGGTCTTGCTGCTGATTTTTGTTACCGTTT
CTTCTCTCGTAGGTACGGGACAGAAACGCCTCAGGGGGTTTTCCTTTGTT
GTTTGACTTGCGTTTTTACTTCCTTTGTACACCGCACTCAGCCCGTTCTA
GATAACAACACCGAGTGTTTCTTGTGACTACGATCGCTTGTCTTGGAAGA
ACTGAATCTTGATCGACTTGCTGTGGTCACCAAGAACCACACGACCGTTT
CAAGTTTGACCCTTGCCCACACCTGCCAACAAGAGGCATCGGGATACGGG
ATGAGCTAACCGAGACGGGCGGAGTACTGTAACGTGGACCCGGGCAGCAC
GAGGAGTCACCTCCCCTGGCATAAATAAACCTTGTCGCACGACATACTTA
TTGCAGACTTTTTTTTCTCTCAACGTTTGCCCCGCGAACGATGCCCAGAG
AGACTCAACTGCGCCCCTTGGATAAGCAGTAATCTTACTCTCTCCTTCTT
TCCCGTCGTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTCC
TCCCCCCCCCCCCCCCTTCTCCTTTTTGTCCCCCCCCCCCCCCCCTTGAA
CCGGCAACGTTACGGCTGGCTGTTCAGGTGGCCGCCTTCGACACGTCTTC
CAGCATCGTGCGTGTATTTCCGGTTTCGGTTGAGGACGACAAGGTCCTTC
GAGGCGATGCTAGCGGCGGCGATGGTGCCTCTGCCGGCGGACTCGGGGGT
GAGCAACAAGAGCAGCAGCGAGAAGGCGGCGGCAGTGATGGCGCAGCGCC
TAGCGTGCGCACCGGGGGAGAGGGGATCGGGCCGGGGAGCGCGGGCCACA
GCGAAGACGCTGCCGCTACCGCCGCCGCCAGCGAGAGCAAACACA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5213:1073..2417+

>mRNA_L-elsbetiae_contig5213.13316.1 ID=mRNA_L-elsbetiae_contig5213.13316.1|Name=mRNA_L-elsbetiae_contig5213.13316.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig5213:1073..2417+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTGCTACGCGGAGCTCCCCAGCGACATGCGCCCGCACGCAGGGGAC
GTGCTCGCCTTCAAGACCCTGTCCCTCAACGAGGAAACCTGGACGCCGGA
GCTCTCGGCCTATCGCACGGCGCAGATGCCTGCTACGCGGAGCTCCCCAG
CGACATGCGCCCGCACGCAGGGGACGTGCTCGCCTTCAAGACCCTGTCCC
TCAACGAGGAAACCTGGACGCCGGAGCTCTCGGCCTATCGCACGGCGCAG
GTGGCCGCCTTCGACACGTCTTCCAGCATCGTGCGTGTATTTCCGGTTTC
GGTTGAGGACGACAAGGTCCTTCGAGGCGATGCTAGCGGCGGCGATGGTG
CCTCTGCCGGCGGACTCGGGGGTGAGCAACAAGAGCAGCAGCGAGAAGGC
GGCGGCAGTGATGGCGCAGCGCCTAGCGTGCGCACCGGGGGAGAGGGGAT
CGGGCCGGGGAGCGCGGGCCACAGCGAAGACGCTGCCGCTACCGCCGCCG
CCAGCGAGAGCAAACACAGTGGCCGCCTTCGACACGTCTTCCAGCATCGT
GCGTGTATTTCCGGTTTCGGTTGAGGACGACAAGGTCCTTCGAGGCGATG
CTAGCGGCGGCGATGGTGCCTCTGCCGGCGGACTCGGGGGTGAGCAACAA
GAGCAGCAGCGAGAAGGCGGCGGCAGTGATGGCGCAGCGCCTAGCGTGCG
CACCGGGGGAGAGGGGATCGGGCCGGGGAGCGCGGGCCACAGCGAAGACG
CTGCCGCTACCGCCGCCGCCAGCGAGAGCAAACACA
back to top