mRNA_L-elsbetiae_contig5211.13313.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5211.13313.1
Unique NamemRNA_L-elsbetiae_contig5211.13313.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5211.13313.1 vs. uniprot
Match: D8LMX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX3_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 1.280e-48
Identity = 84/94 (89.36%), Postives = 86/94 (91.49%), Query Frame = 2 
Query:    2 KLAASVPYAEACANAEAKLDHITAATAAHFDQFLPFDRSRGHCPMFGYNTGKVFKDARFRLGLYLREAGVSASKSAHAAVMRAAGPLAAAPYGQ 283
            +LAASVPYAEACANAEAKLDHIT ATAAHFDQFLP DRSRGHCPM GYNTG+VFKDARFRLGLYLREAGVS  KSAH AVMRAAGP A APYGQ
Sbjct:  340 RLAASVPYAEACANAEAKLDHITVATAAHFDQFLPHDRSRGHCPMLGYNTGEVFKDARFRLGLYLREAGVSGCKSAHVAVMRAAGPRAPAPYGQ 433
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BLAST of mRNA_L-elsbetiae_contig5211.13313.1 vs. uniprot
Match: A0A7S2BDN4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BDN4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.460e-8
Identity = 44/95 (46.32%), Postives = 56/95 (58.95%), Query Frame = 2 
Query:    5 LAASVPYAEACANAEAKLDHITAATAAHFDQFLPFDRSRGHCPMFGYNTG----KVFKDARFRLGLYLREAGVSASKSAHAAVMRAAGPLAAAPY 277
            +AASVPYAEA A A++ L   TAA    FDQ + FD +  H      N G    K+F D RF+LG  L  AGV+ S +A +AV RA  P+AA P+
Sbjct:   73 IAASVPYAEAIAQAQSDLTKTTAA----FDQAV-FDAADFHRNPHSVNNGFSDKKLFADPRFKLGYALHAAGVNGSAAAASAVQRAC-PVAATPF 161
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BLAST of mRNA_L-elsbetiae_contig5211.13313.1 vs. uniprot
Match: A0A7S2WUK3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUK3_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.400e-6
Identity = 41/92 (44.57%), Postives = 52/92 (56.52%), Query Frame = 2 
Query:    2 KLAASVPYAEACANAEAKLDHITAATAAHFDQFLPFDRSRGHCPMFGYNTGKVFKDARFRLGLYLREAGVSASKSAHAAVMRAAGPLAAAPY 277
            ++AASVPYAEA A A+A L   TAA A        F R   H  + G++  K+F D RF+LG  L  AGVS S +A +AV R   P +  PY
Sbjct:  114 RIAASVPYAEAIAQAKADLLKPTAAVANAIFDGESF-RQNPHSIVQGFSDKKLFSDKRFKLGYALHSAGVSHSAAAASAV-RIMCPSSKRPY 203
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BLAST of mRNA_L-elsbetiae_contig5211.13313.1 vs. uniprot
Match: A0A7S2SUG3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUG3_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.650e-6
Identity = 41/92 (44.57%), Postives = 52/92 (56.52%), Query Frame = 2 
Query:    2 KLAASVPYAEACANAEAKLDHITAATAAHFDQFLPFDRSRGHCPMFGYNTGKVFKDARFRLGLYLREAGVSASKSAHAAVMRAAGPLAAAPY 277
            ++AASVPYAEA A A+A L   TAA A        F R   H  + G++  K+F D RF+LG  L  AGVS S +A +AV R   P +  PY
Sbjct:  286 RIAASVPYAEAIAQAKADLLKPTAAVANAIFDGESF-RQNPHSIVQGFSDKKLFSDKRFKLGYALHSAGVSHSAAAASAV-RIMCPSSKRPY 375
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5211.13313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LMX3_ECTSI1.280e-4889.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2BDN4_9STRA2.460e-846.32Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2WUK3_9STRA2.400e-644.57Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SUG3_9STRA4.650e-644.57Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5211contigL-elsbetiae_contig5211:476..1036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_003960.1
Exons2
Model size341
Cds size159
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5211.13313.1prot_L-elsbetiae_contig5211.13313.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5211 829..987 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816535.3816445-UTR-L-elsbetiae_contig5211:475..5461622816535.3816445-UTR-L-elsbetiae_contig5211:475..546Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5211 476..546 +
1691683629.9526274-UTR-L-elsbetiae_contig5211:475..5461691683629.9526274-UTR-L-elsbetiae_contig5211:475..546Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5211 476..546 +
1622816535.393695-UTR-L-elsbetiae_contig5211:766..8281622816535.393695-UTR-L-elsbetiae_contig5211:766..828Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5211 767..828 +
1691683629.966253-UTR-L-elsbetiae_contig5211:766..8281691683629.966253-UTR-L-elsbetiae_contig5211:766..828Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5211 767..828 +
1622816535.418954-UTR-L-elsbetiae_contig5211:987..10361622816535.418954-UTR-L-elsbetiae_contig5211:987..1036Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5211 988..1036 +
1691683629.9839504-UTR-L-elsbetiae_contig5211:987..10361691683629.9839504-UTR-L-elsbetiae_contig5211:987..1036Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5211 988..1036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816535.4046674-CDS-L-elsbetiae_contig5211:828..9871622816535.4046674-CDS-L-elsbetiae_contig5211:828..987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5211 829..987 +
1691683629.9756253-CDS-L-elsbetiae_contig5211:828..9871691683629.9756253-CDS-L-elsbetiae_contig5211:828..987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5211 829..987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5211.13313.1

>prot_L-elsbetiae_contig5211.13313.1 ID=prot_L-elsbetiae_contig5211.13313.1|Name=mRNA_L-elsbetiae_contig5211.13313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=53bp
MFGYNTGKVFKDARFRLGLYLREAGVSASKSAHAAVMRAAGPLAAAPYGQ
AA*
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mRNA from alignment at L-elsbetiae_contig5211:476..1036+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5211.13313.1 ID=mRNA_L-elsbetiae_contig5211.13313.1|Name=mRNA_L-elsbetiae_contig5211.13313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=561bp|location=Sequence derived from alignment at L-elsbetiae_contig5211:476..1036+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGTTGGCGGCGAGCGTGCCGTACGCCGAGGCTTGTGCGAACGCCGAAG
CTAAGCTGGACCATATCACAGGTGAAAAAAAAACATCGGCGGGGGAAGGG
ATGATCAACGAACGGTCAATGCAATCTGTTTTTTGGGGGTTTTCATCAAG
AGCGAGTGTGCCACTTGAAGTTCAAGAATAAGTGGCTACGTGCCACGGTG
TTAGCTCGCTCATACATACACTACTCGATTTCTCCCCCCGCGGGCGTGCG
CTTATACCCATCGCCATCCCCCCCACCAAACTTGTCCGCAGCCGCCACAG
CAGCGCACTTCGACCAGTTTTTGCCCTTCGATCGCTCCAGGGGGCACTGC
CCCATGTTCGGCTACAACACGGGGAAGGTCTTCAAGGACGCGCGTTTCCG
GCTGGGGCTGTACCTGAGGGAGGCCGGCGTATCGGCGTCGAAGTCCGCTC
ACGCCGCTGTCATGCGCGCCGCGGGGCCCCTTGCCGCCGCTCCGTACGGG
CAAGCAGCATAGTAGTGAACGGGGCGCATCCCTATAGAAGTATATATGTA
TGTAGTTCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5211:476..1036+

>mRNA_L-elsbetiae_contig5211.13313.1 ID=mRNA_L-elsbetiae_contig5211.13313.1|Name=mRNA_L-elsbetiae_contig5211.13313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig5211:476..1036+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGGCTACAACACGGGGAAGGTCTTCAAGGACGCGCGTTTCCGGCT
GGGGCTGTACCTGAGGGAGGCCGGCGTATCGGCGTCGAAGTCCGCTCACG
CCGCTGTCATGCGCGCCGCGGGGCCCCTTGCCGCCGCTCCGTACGGGCAA
GCAGCATAGATGTTCGGCTACAACACGGGGAAGGTCTTCAAGGACGCGCG
TTTCCGGCTGGGGCTGTACCTGAGGGAGGCCGGCGTATCGGCGTCGAAGT
CCGCTCACGCCGCTGTCATGCGCGCCGCGGGGCCCCTTGCCGCCGCTCCG
TACGGGCAAGCAGCATAG
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