mRNA_L-elsbetiae_contig5209.13308.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5209.13308.1
Unique NamemRNA_L-elsbetiae_contig5209.13308.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5209.13308.1 vs. uniprot
Match: D7FZI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI8_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.060e-7
Identity = 132/392 (33.67%), Postives = 150/392 (38.27%), Query Frame = 1 
Query:  142 LELSRISEGETSRIAES-----GVDGGGGRXXXXVGSHELSSASPLHADEGGXXXXXXXXXXXXAEAAAGCAASRTGWLRPRTPGXXXXXXXXXXXXXXXXXXDFGEPLNSRQSLGSSWGGCSTIKRR-GEDLTGGGLGLRPLGDGDGEDADAGADAVGGFDYTRGMEEEAADEEGGTEGRFVARGXXXXXRASTXXXXXIXXAGGA--GIGIAASRWNSRRSSSSGXXSVGA----AAGDFSLGSIGGXXXXXXGVTPLPAGRGGA-HSAGT-----------------GRGGRSGGVPGVAAGTAPGEAGGPITEDGGAXXXXXXXXXXASGGRASYHSLCFSSSSSGSATT--PHS-SLSAS-PF-RLLDGDESA*INVQASRGGDDST 1212
            L LSRISEG    I+ S     G   G GR       +  SS   L  D+               E   G + SR GWLRPRTP        XXXXXX           +SRQSLGS+WGGCSTIKRR G+D +G G               + A   G  +   G   +  + E  T G   A   XXXX             G    G G+  SRW++ R S   XX        A G+ S+           GVTPLPAGRGG    AG                  GR GR+G   G                               SGGRA YHSLCFSS          PHS SLSAS PF  LLD             GGDDST
Sbjct:   43 LGLSRISEGGGGEISRSTERIRGSSSGDGREDQAASDNVSSS---LMFDDN---------DSSDGEGLDGYSVSRAGWLRPRTPAGATNGRGXXXXXX----------XSSRQSLGSTWGGCSTIKRRPGDDDSGAGW--------------SSARRRGALNTGLGHHHQDVEGEDSTRGVVGAERSXXXXXXXXSGTDGFATEGSMYPGAGVGGSRWSNGRKSXXXXXXXXXXXSFAVGEASVARPVAATFGCDGVTPLPAGRGGGPREAGAXXXXXXXXXXXXXXXSAGREGRAGXXXGEG----------------------------VSGGRADYHSLCFSSXXXXXXXXXXPHSGSLSASSPFLNLLD-------------GGDDST 357
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5209.13308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZI8_ECTSI1.060e-733.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5209contigL-elsbetiae_contig5209:2103..3841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_001570.1
Exons2
Model size1586
Cds size1038
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5209.13308.1prot_L-elsbetiae_contig5209.13308.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5209 2238..3428 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816534.6083648-UTR-L-elsbetiae_contig5209:2102..22371622816534.6083648-UTR-L-elsbetiae_contig5209:2102..2237Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5209 2103..2237 +
1691683629.4370232-UTR-L-elsbetiae_contig5209:2102..22371691683629.4370232-UTR-L-elsbetiae_contig5209:2102..2237Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5209 2103..2237 +
1622816534.6434646-UTR-L-elsbetiae_contig5209:3428..38411622816534.6434646-UTR-L-elsbetiae_contig5209:3428..3841Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5209 3429..3841 +
1691683629.4719987-UTR-L-elsbetiae_contig5209:3428..38411691683629.4719987-UTR-L-elsbetiae_contig5209:3428..3841Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5209 3429..3841 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816534.6192763-CDS-L-elsbetiae_contig5209:2237..25151622816534.6192763-CDS-L-elsbetiae_contig5209:2237..2515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5209 2238..2515 +
1691683629.4487731-CDS-L-elsbetiae_contig5209:2237..25151691683629.4487731-CDS-L-elsbetiae_contig5209:2237..2515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5209 2238..2515 +
1622816534.6320374-CDS-L-elsbetiae_contig5209:2668..34281622816534.6320374-CDS-L-elsbetiae_contig5209:2668..3428Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5209 2669..3428 +
1691683629.4600239-CDS-L-elsbetiae_contig5209:2668..34281691683629.4600239-CDS-L-elsbetiae_contig5209:2668..3428Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5209 2669..3428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5209.13308.1

>prot_L-elsbetiae_contig5209.13308.1 ID=prot_L-elsbetiae_contig5209.13308.1|Name=mRNA_L-elsbetiae_contig5209.13308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=346bp
MLLELSRISEGETSRIAESGVDGGGGRGGDGVGSHELSSASPLHADEGGE
THGNAGGDDHGAEAAAGCAASRTGWLRPRTPGGGGGGGGANGLLSGGGGG
DFGEPLNSRQSLGSSWGGCSTIKRRGEDLTGGGLGLRPLGDGDGEDADAG
ADAVGGFDYTRGMEEEAADEEGGTEGRFVARGGGGGGRASTGGRASIGGA
GGAGIGIAASRWNSRRSSSSGGGSVGAAAGDFSLGSIGGGAGAGGGVTPL
PAGRGGAHSAGTGRGGRSGGVPGVAAGTAPGEAGGPITEDGGAGAGAGAG
TGTASGGRASYHSLCFSSSSSGSATTPHSSLSASPFRLLDGDESA*
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mRNA from alignment at L-elsbetiae_contig5209:2103..3841+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5209.13308.1 ID=mRNA_L-elsbetiae_contig5209.13308.1|Name=mRNA_L-elsbetiae_contig5209.13308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1739bp|location=Sequence derived from alignment at L-elsbetiae_contig5209:2103..3841+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGTGGTCCCGCGCGCTGGGGCGGGGGTGGGGGCGGCGGCGGGGGTTGC
TTCGGTGCCTGCGGTAACGGCGGCTTCGCTGGCGTCGTCTCTGAGGCGGA
AGAGCGCGGGGGCCGGCCTTCACGCCGGCGGGCCGATGCTGCTGGAATTG
TCCCGCATCTCGGAGGGCGAGACGTCCCGCATCGCCGAGAGCGGCGTCGA
CGGCGGCGGCGGCAGGGGCGGTGACGGGGTCGGCAGCCACGAGCTTTCTT
CGGCATCGCCGCTTCACGCGGACGAGGGCGGCGAGACGCACGGTAACGCC
GGCGGCGACGATCACGGTGCTGAGGCCGCCGCCGGGTGCGCCGCCTCGCG
CACCGGCTGGCTCCGGCCCCGCACTCCCGGCGGCGGCGGCGGCGGCGGCG
GCGCTAACGGGCTGTTTTCTTCGGCGGGGGAGTTCCCGGCGGAGAGCACT
CCTCGAGCGTCGGCCGTCGCGCTGGCCACCCCGCTAGGGCGAGGTTCTAG
CAGGTACCACGACGGAGGCGGCGGCGGCGGCGGCGGATTGTCACGCGGAG
GCAGACGCCGGAGCAGCTTGTCCGGCGGCGGCGGCGGCGACTTCGGCGAG
CCCTTGAACTCCCGCCAGTCGCTGGGGAGCTCGTGGGGCGGGTGCTCGAC
GATCAAGCGCCGCGGGGAGGACCTGACCGGCGGCGGCTTGGGGCTGAGGC
CGCTAGGCGATGGGGACGGCGAGGACGCCGACGCCGGCGCGGACGCTGTC
GGCGGCTTTGACTACACTCGCGGGATGGAAGAAGAAGCGGCGGACGAGGA
GGGCGGCACGGAGGGAAGGTTTGTTGCCCGCGGCGGCGGCGGTGGTGGTA
GAGCCAGCACCGGCGGCAGAGCCAGCATCGGAGGTGCCGGCGGCGCCGGG
ATCGGGATTGCCGCGAGCAGGTGGAACAGCCGGAGAAGCTCTTCCTCTGG
CGGCGGCAGTGTTGGAGCGGCCGCCGGCGACTTTTCGCTGGGCTCCATCG
GCGGCGGCGCGGGCGCCGGCGGCGGTGTGACTCCGCTGCCGGCGGGGCGG
GGGGGGGCACACAGCGCCGGCACCGGCCGCGGTGGCAGAAGCGGAGGCGT
TCCTGGCGTTGCTGCCGGCACGGCGCCGGGTGAGGCCGGTGGACCCATTA
CAGAGGACGGGGGAGCGGGGGCGGGCGCGGGAGCGGGGACGGGGACGGCG
AGCGGCGGCCGCGCCAGTTACCACTCCCTCTGCTTTTCTAGCTCGTCTTC
GGGGTCCGCCACCACCCCGCACAGCTCGCTGTCGGCGTCTCCGTTCAGAC
TTCTTGACGGCGATGAGTCCGCTTGAATTAACGTTCAGGCTTCTCGGGGC
GGCGATGACTCCACTTGAAGTAACGTTCATGCTTCTCGACGGCGATGGAT
GACTCTGCTTGAATTACTAATTGTCGGCTCGTTCTCGCTTGTGATTGTTG
TTGTTCGTGTCTCCGAAATACAAATACCTCGGAGTAAACGTCGCCAATGA
CAGTGGCATAACAGACAAATAAGCTAATAATGGGAGCACGAAAAAGAAGA
GGAGAAAAGTTCGTCCAACTTGCTGTGACATACTTCGAGTATAAGTCTTT
CCGGGGGGTCGATCTTTTGTTGTCGTGGGAACACTACGGTAGTAATACTG
TAACAGCAGATAAGGGTCTGCGGGCTTACAGCGGTACGCCCAACCTGCTC
TGACCTGTGAATCTGAATCTTCCCAGAGGATCTAAATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5209:2103..3841+

>mRNA_L-elsbetiae_contig5209.13308.1 ID=mRNA_L-elsbetiae_contig5209.13308.1|Name=mRNA_L-elsbetiae_contig5209.13308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2076bp|location=Sequence derived from alignment at L-elsbetiae_contig5209:2103..3841+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCTGGAATTGTCCCGCATCTCGGAGGGCGAGACGTCCCGCATCGC
CGAGAGCGGCGTCGACGGCGGCGGCGGCAGGGGCGGTGACGGGGTCGGCA
GCCACGAGCTTTCTTCGGCATCGCCGCTTCACGCGGACGAGGGCGGCGAG
ACGCACGGTAACGCCGGCGGCGACGATCACGGTGCTGAGGCCGCCGCCGG
GTGCGCCGCCTCGCGCACCGGCTGGCTCCGGCCCCGCACTCCCGGCGGCG
GCGGCGGCGGCGGCGGCGCTAACGGGCTATGCTGCTGGAATTGTCCCGCA
TCTCGGAGGGCGAGACGTCCCGCATCGCCGAGAGCGGCGTCGACGGCGGC
GGCGGCAGGGGCGGTGACGGGGTCGGCAGCCACGAGCTTTCTTCGGCATC
GCCGCTTCACGCGGACGAGGGCGGCGAGACGCACGGTAACGCCGGCGGCG
ACGATCACGGTGCTGAGGCCGCCGCCGGGTGCGCCGCCTCGCGCACCGGC
TGGCTCCGGCCCCGCACTCCCGGCGGCGGCGGCGGCGGCGGCGGCGCTAA
CGGGCTCTTGTCCGGCGGCGGCGGCGGCGACTTCGGCGAGCCCTTGAACT
CCCGCCAGTCGCTGGGGAGCTCGTGGGGCGGGTGCTCGACGATCAAGCGC
CGCGGGGAGGACCTGACCGGCGGCGGCTTGGGGCTGAGGCCGCTAGGCGA
TGGGGACGGCGAGGACGCCGACGCCGGCGCGGACGCTGTCGGCGGCTTTG
ACTACACTCGCGGGATGGAAGAAGAAGCGGCGGACGAGGAGGGCGGCACG
GAGGGAAGGTTTGTTGCCCGCGGCGGCGGCGGTGGTGGTAGAGCCAGCAC
CGGCGGCAGAGCCAGCATCGGAGGTGCCGGCGGCGCCGGGATCGGGATTG
CCGCGAGCAGGTGGAACAGCCGGAGAAGCTCTTCCTCTGGCGGCGGCAGT
GTTGGAGCGGCCGCCGGCGACTTTTCGCTGGGCTCCATCGGCGGCGGCGC
GGGCGCCGGCGGCGGTGTGACTCCGCTGCCGGCGGGGCGGGGGGGGGCAC
ACAGCGCCGGCACCGGCCGCGGTGGCAGAAGCGGAGGCGTTCCTGGCGTT
GCTGCCGGCACGGCGCCGGGTGAGGCCGGTGGACCCATTACAGAGGACGG
GGGAGCGGGGGCGGGCGCGGGAGCGGGGACGGGGACGGCGAGCGGCGGCC
GCGCCAGTTACCACTCCCTCTGCTTTTCTAGCTCGTCTTCGGGGTCCGCC
ACCACCCCGCACAGCTCGCTGTCGGCGTCTCCGTTCAGACTTCTTGACGG
CGATGAGTCCGCTTGACTTGTCCGGCGGCGGCGGCGGCGACTTCGGCGAG
CCCTTGAACTCCCGCCAGTCGCTGGGGAGCTCGTGGGGCGGGTGCTCGAC
GATCAAGCGCCGCGGGGAGGACCTGACCGGCGGCGGCTTGGGGCTGAGGC
CGCTAGGCGATGGGGACGGCGAGGACGCCGACGCCGGCGCGGACGCTGTC
GGCGGCTTTGACTACACTCGCGGGATGGAAGAAGAAGCGGCGGACGAGGA
GGGCGGCACGGAGGGAAGGTTTGTTGCCCGCGGCGGCGGCGGTGGTGGTA
GAGCCAGCACCGGCGGCAGAGCCAGCATCGGAGGTGCCGGCGGCGCCGGG
ATCGGGATTGCCGCGAGCAGGTGGAACAGCCGGAGAAGCTCTTCCTCTGG
CGGCGGCAGTGTTGGAGCGGCCGCCGGCGACTTTTCGCTGGGCTCCATCG
GCGGCGGCGCGGGCGCCGGCGGCGGTGTGACTCCGCTGCCGGCGGGGCGG
GGGGGGGCACACAGCGCCGGCACCGGCCGCGGTGGCAGAAGCGGAGGCGT
TCCTGGCGTTGCTGCCGGCACGGCGCCGGGTGAGGCCGGTGGACCCATTA
CAGAGGACGGGGGAGCGGGGGCGGGCGCGGGAGCGGGGACGGGGACGGCG
AGCGGCGGCCGCGCCAGTTACCACTCCCTCTGCTTTTCTAGCTCGTCTTC
GGGGTCCGCCACCACCCCGCACAGCTCGCTGTCGGCGTCTCCGTTCAGAC
TTCTTGACGGCGATGAGTCCGCTTGA
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