mRNA_L-elsbetiae_contig5202.13297.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5202.13297.1
Unique NamemRNA_L-elsbetiae_contig5202.13297.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5202.13297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5202contigL-elsbetiae_contig5202:6693..7012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size307
Cds size180
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5202.13297.1prot_L-elsbetiae_contig5202.13297.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5202 6818..7012 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816533.7196352-UTR-L-elsbetiae_contig5202:6692..68171622816533.7196352-UTR-L-elsbetiae_contig5202:6692..6817Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5202 6693..6817 +
1691683628.8276846-UTR-L-elsbetiae_contig5202:6692..68171691683628.8276846-UTR-L-elsbetiae_contig5202:6692..6817Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5202 6693..6817 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816533.7335107-CDS-L-elsbetiae_contig5202:6817..68351622816533.7335107-CDS-L-elsbetiae_contig5202:6817..6835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5202 6818..6835 +
1691683628.8455234-CDS-L-elsbetiae_contig5202:6817..68351691683628.8455234-CDS-L-elsbetiae_contig5202:6817..6835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5202 6818..6835 +
1622816533.7444274-CDS-L-elsbetiae_contig5202:6850..70121622816533.7444274-CDS-L-elsbetiae_contig5202:6850..7012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5202 6851..7012 +
1691683628.8572865-CDS-L-elsbetiae_contig5202:6850..70121691683628.8572865-CDS-L-elsbetiae_contig5202:6850..7012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5202 6851..7012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5202.13297.1

>prot_L-elsbetiae_contig5202.13297.1 ID=prot_L-elsbetiae_contig5202.13297.1|Name=mRNA_L-elsbetiae_contig5202.13297.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=60bp
MPCRTGHIDPFGALHQSANESGVSNESRIFKKREIEIYKERERERRGCVC
SSDGGGECAA
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mRNA from alignment at L-elsbetiae_contig5202:6693..7012+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5202.13297.1 ID=mRNA_L-elsbetiae_contig5202.13297.1|Name=mRNA_L-elsbetiae_contig5202.13297.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=320bp|location=Sequence derived from alignment at L-elsbetiae_contig5202:6693..7012+ (Laminarionema elsbetiae ELsaHSoW15)
AGAGAACTGCCCTACTCCTTGCAGAGCAGTTGAGCTTGATAGAGAGTTTC
ATCGAGAGAAAGGAATAGAGAGGGCGAGCCAGAGCTTCCCTACTTGCATT
TGACGGCGTGCCACGAGTGTGCCGCATGCCTTGCAGGACGGGACACATGC
CCAGCTTGCACATTGACCCCTTCGGCGCGCTTCACCAGTCGGCGAATGAA
AGCGGAGTTTCAAACGAGAGTCGAATTTTCAAAAAGAGAGAGATCGAGAT
ATATAAAGAGAGAGAGAGAGAGAGGAGAGGATGTGTGTGTAGTAGTGATG
GGGGAGGAGAGTGTGCAGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5202:6693..7012+

>mRNA_L-elsbetiae_contig5202.13297.1 ID=mRNA_L-elsbetiae_contig5202.13297.1|Name=mRNA_L-elsbetiae_contig5202.13297.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig5202:6693..7012+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTTGCAGGACGGGAATGCCTTGCAGGACGGGACACATTGACCCCTT
CGGCGCGCTTCACCAGTCGGCGAATGAAAGCGGAGTTTCAAACGAGAGTC
GAATTTTCAAAAAGAGAGAGATCGAGATATATAAAGAGAGAGAGAGAGAG
AGGAGAGGATGTGTGTGTAGTAGTGATGGGGGAGGAGAGTGTGCAGCACA
CATTGACCCCTTCGGCGCGCTTCACCAGTCGGCGAATGAAAGCGGAGTTT
CAAACGAGAGTCGAATTTTCAAAAAGAGAGAGATCGAGATATATAAAGAG
AGAGAGAGAGAGAGGAGAGGATGTGTGTGTAGTAGTGATGGGGGAGGAGA
GTGTGCAGCA
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