mRNA_L-elsbetiae_contig5196.13282.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5196.13282.1
Unique NamemRNA_L-elsbetiae_contig5196.13282.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5196.13282.1 vs. uniprot
Match: D7G6K1_ECTSI (CRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K1_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 4.290e-46
Identity = 85/107 (79.44%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    1 VKVLWRRVRKQLMSVGKGGIKESHVRSLNSLIAAHTLVKVKVNIPYADLAEVGLELTGKAGGAASEGEGDEDATSPGVGVSVVKVNPNQKTILFANTEFLAAQARGE 321
            V+ LW RV+KQL+SVGKGGIK SHVRSLNSLIAAHTLVKVKVNIP ADL EVGLEL GK G A   G+GDE   SP VGVSVV VNPNQK ILFANTEFLA+QARGE
Sbjct:   22 VEELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELAGKGGLALGGGDGDE--ASPAVGVSVVTVNPNQKVILFANTEFLASQARGE 126
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BLAST of mRNA_L-elsbetiae_contig5196.13282.1 vs. uniprot
Match: A0A6H5JP08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP08_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 5.900e-43
Identity = 82/107 (76.64%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:    1 VKVLWRRVRKQLMSVGKGGIKESHVRSLNSLIAAHTLVKVKVNIPYADLAEVGLELTGKAGGAASEGEGDEDATSPGVGVSVVKVNPNQKTILFANTEFLAAQARGE 321
            V+ LW RV+KQL+SVGKGGIK SHVRSLNSLIAAHTLVKVKVNIP ADL EVGLEL GK G     G GD D  S  VGVSVV VNPNQK ILFANT+FLA+QARGE
Sbjct:   99 VEELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELVGKGG--LKSGGGDGDEASRAVGVSVVTVNPNQKVILFANTDFLASQARGE 203
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BLAST of mRNA_L-elsbetiae_contig5196.13282.1 vs. uniprot
Match: A0A7R9XYF3_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9XYF3_9VIRI)

HSP 1 Score: 53.1 bits (126), Expect = 5.870e-6
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:    1 VKVLWRRVRKQLMSVGKGGIKESHVRSLNSLIAAHTLVKVKVNIPYADLAEVGLELTG---KAGGAAS 195
            V+  W  VRKQL+SVG+ G+++SH  SL   + AH+LVKVK+     D      ELT    +AGG+++
Sbjct:   64 VRAAWDSVRKQLISVGRAGVRQSHANSLAEALRAHSLVKVKLASDAMDAGRAAAELTALVKRAGGSSA 131
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5196.13282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6K1_ECTSI4.290e-4679.44CRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JP08_9PHAE5.900e-4376.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9XYF3_9VIRI5.870e-642.65Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5196contigL-elsbetiae_contig5196:3624..6989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionRNA-binding, CRM domain
Ec32 orthologEc-05_006480.1
Exons2
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816532.0492904-CDS-L-elsbetiae_contig5196:3623..37461622816532.0492904-CDS-L-elsbetiae_contig5196:3623..3746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5196 3624..3746 +
1691683627.6058922-CDS-L-elsbetiae_contig5196:3623..37461691683627.6058922-CDS-L-elsbetiae_contig5196:3623..3746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5196 3624..3746 +
1622816532.0604076-CDS-L-elsbetiae_contig5196:6791..69891622816532.0604076-CDS-L-elsbetiae_contig5196:6791..6989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5196 6792..6989 +
1691683627.6159298-CDS-L-elsbetiae_contig5196:6791..69891691683627.6159298-CDS-L-elsbetiae_contig5196:6791..6989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5196 6792..6989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5196.13282.1prot_L-elsbetiae_contig5196.13282.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5196 3624..6989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5196.13282.1

>prot_L-elsbetiae_contig5196.13282.1 ID=prot_L-elsbetiae_contig5196.13282.1|Name=mRNA_L-elsbetiae_contig5196.13282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
VKVLWRRVRKQLMSVGKGGIKESHVRSLNSLIAAHTLVKVKVNIPYADLA
EVGLELTGKAGGAASEGEGDEDATSPGVGVSVVKVNPNQKTILFANTEFL
AAQARGE
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mRNA from alignment at L-elsbetiae_contig5196:3624..6989+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5196.13282.1 ID=mRNA_L-elsbetiae_contig5196.13282.1|Name=mRNA_L-elsbetiae_contig5196.13282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3366bp|location=Sequence derived from alignment at L-elsbetiae_contig5196:3624..6989+ (Laminarionema elsbetiae ELsaHSoW15)
GTCAAGGTGCTGTGGAGGAGAGTGAGGAAGCAACTCATGAGCGTCGGTAA
GGGAGGGATAAAGGAAAGCCACGTACGATCGCTCAACTCCCTCATCGCGG
CGCACACCTTGGTGAAGGTCAAGGTATGTACTCCGAGCATCTGTCTATGT
TTTTTTTGTTTTTTTTCGCCCATCATTGGTATATTTGTCGTCTGCCCCAC
TGGCCCCCTTCCTCCACGGCGACTAGCTAGACGACCCAACCGGGGTCACA
CAGGAGGGGGGGTTGGACCCCCTCCTGCGGTGCCTGCCTATGTGTGTATG
TATGTGTGTGTATGTACGTTGGGAACGGGGGGGGGGATGTGCCCTCGTCA
TGATTGGAGTGTTTGCACTCACGGGGCACAGTAGTATCCGACCATACCCC
CCCCCCATCTCTAACGAGGCGGGGGTGTAGCTCTCCAGGGCAGCGTTATT
GCAATTCTAGTTTAAGGAGGCGCAAAATTGTCCAAAAACGAGCTTGTTTT
TGGCCAGTGCTCGCCGCTGAGAGCAGTTTTTCGGAGGAAGAAGGGTTAGG
CCTATAGCCCTGATGCTCCTTGATGATGCAACAGGAATAGAACGAAGCGA
ATCGGTGCTCTGGCCGCGGAGTATGGAGTGTTTTGGGTGACCAACAAAGT
ACGACGGGGCCTCGCAGGCAGAAATCACGCTCATACACGACATTCCCACC
AAAAAGCCCCGTCCTCTGGAGGCGCGCACCGGCACCGTGCGCCAGCCCTA
GGACTTGACAATCTTCATTCCAGACGAAATAAATCACACACGATGCCATC
TATTGCTCATAACTAGCGTCAGTGCGGATTTCAGACCCTCAATCGCTTTG
TAAGCGTCGAGTCAGAGCTGCCTCCGAACAAACTTGGATGGGCTCGGCGA
GACCGGCAGCAACAGACAGCAGCAGCTGTAGTTAGTGTCCTACATGACCA
TTTGCGGTATTAGCGGGTATTCTGCACATCTGAGACCCTACTCTTGCCGT
AGCGCGCAGTCTCGTCATGGATTCAGAACCGTTGCTTCTGCGCCCACATC
GCCCAAAAATCTTGCTGCGCGTCTGCGAACTGGCTCTCTCCTCTCTCTAA
TCTCAGCACCAAAGCTTGTGACGCCGAGATTTATTGTCCTGCATAGATCG
ACGCCCAGTTTTTTTGTCCCACCATGGAGCCAATGACCTTATCGACACAT
CCTCTCACTCCCGACTTGATTAAATCCCCGTCGCTGAGCTTTCCGCCTCT
CTGTGTCGCCTTGCCACCCCAGTACACTGAAGACCAGTGTTTAGGGGATA
CGCAAACGATGGTACCCTCCAAAGCTGTGTGCCCCCCGCCCGCACATGCG
CCTCCTTAAATTTGAATTATCATAACACTGAGGGTTTCCTCCGGATGGTG
ATGCCCAAGTAAGTCTAAAAGCATTTTATCAAAACAATATTTTATTTCCC
ATGTATCAAAGCTGAAGGTGCGGTGGATTGTGGATTGCCGTTGCAACTTG
TAATGCTTCCGCGGGAGGGGGCAGAGTAAGGCTCGGGGGGACGCTGCTGC
TCGGAGAAGGAAAAGCCTGGGCGCGTTAAACTTCACCTTTTGATTCCCGA
TTGCTTCGAACTACTACTACTGCTGTGCGTGTGTGTGTGTGTGTGTGCGT
ATTTGTGTGTTTGTTTGTGTGTATGCGTGTGTGTGTGTTTGTTGGTTTGT
GTGTGTGTGTGTGTGTGTTCAACCGCAGGTGTCGTCGTTGAGCACTGAGG
ACACACACTGGTTCGAAATGGCGGCGGGATTACTCTTCTTCTACGGCTTT
TGTCCGGTCGTGTCCGCCTGATGTTGGCGCTTCACGGGAACTCGCCCCTA
GTACTGTTTACGCGGCTACTGCTCGTGTCAAGTTTTGACGTCGCCTCTTT
GAGACCCACGCTTACTAGCTGGAGAGAACAACAGTGGCTGGCTCAACGAT
GGTTTCTTCAGGCTTAATTCGATTGGTTATTGTTCCATCAATACATGCGT
GCCCGCTTGGTGCGCTTCGAACCAGTATCACCCCTGGCCCGCCTACATTC
AAAAGCGTGGCATCTCTTTTCACGTCACGCAGTTTCCGCTCGCGTCGAAA
CCCCCAACGCAGTGGTTTCTTGACAAAAGTGTCTAAATAACAAACGCCAC
AACATGTGTACGTCGCGATACAAACATCACAGGCAGGCACCACAGGAGGG
GATCCACCCCCCCTCCTCTGTGTGACTCCGGCTGGGTCGTCTAGCCAGTC
GTAGTGGAGGAAGGGGGCCAGTGGGGCAAACGACGAATAAGCCCATAATG
GGAAATAAACAATATATATGGTCCGTGCACAACAAAATTTCCAAAATTTC
CCCAGCGCCCGGGTACACTTTTCTCTGGACACAGGTGGTCGTTCCGAGAT
CCGAAAGTACCGGCAAACGCCCTGTGTTCAGGCGCAAAACTTGATGGAGA
GTTTTTTTTTTTTCTTCGTTGACTTTTTATCGGAGATAAATCGTGAAAGC
TTGTAGTCTTTTTCCTGGGGTGTGGTGTTTGTCGATTTTAAATATCTCAA
CGGATTTGAACAGATCTCGGAATTTGCCAGACCAGTATTTTTTTTTTCTC
AATAATCAAAATTGTCAAAGATATGGCGGAAAAACCGGATCTAGAGGGTC
AACTTGTATTCTTTTATAGAGATAACTAACCGACCGATTTCAAAATAATC
ACCGGCAAACGACTCCTCTCATCAATCCCTAGACCACTATTTTTTTTTTT
CCCGGGAAAACTCTTGTTCTCGAGGTATTCCGCATTTTGTTTTGCAGTCA
TTCTTCAGTATAGTCTGGTGGTTCAGCAGTTTCCGATGGGGCTCCGTGAT
GTCGAAGGGGGTTCCATGGCAAGTACAGGGGCTCCGTGAGGCGAAAATCG
GCCGAAAATGCCGCATTTCGCCAAAATTAAAAAAACTCTGCAGCTATCGA
CGCAGTTTTTCAAGGCGGTCACGAATATCGTTGTTTCACGTTACAAATAT
TGTTCTGACAACAGTTATCGCACAAAACGCGATTGGACAAATTGTTGTGC
ACGGACCACAGATATACATGTTCAACGTACATGCACGTTTATTCTTGCAT
TTGCTCGTGAGGTGTTTAGTTGTCCCGACTTTTGTCTGTGCATCGTTTGT
CTCGTGCTCTTGCCCCAGGTGAATATTCCGTATGCCGACCTGGCAGAGGT
GGGGCTCGAGCTAACCGGGAAGGCAGGCGGGGCGGCTTCGGAGGGGGAGG
GGGACGAAGACGCGACGTCCCCGGGTGTCGGTGTTTCGGTGGTCAAGGTG
AACCCCAACCAGAAGACCATCCTGTTCGCCAACACGGAGTTCCTCGCCGC
TCAAGCGAGAGGGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5196:3624..6989+

>mRNA_L-elsbetiae_contig5196.13282.1 ID=mRNA_L-elsbetiae_contig5196.13282.1|Name=mRNA_L-elsbetiae_contig5196.13282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig5196:3624..6989+ (Laminarionema elsbetiae ELsaHSoW15)
GTCAAGGTGCTGTGGAGGAGAGTGAGGAAGCAACTCATGAGCGTCGGTAA
GGGAGGGATAAAGGAAAGCCACGTACGATCGCTCAACTCCCTCATCGCGG
CGCACACCTTGGTGAAGGTCAAGGTCAAGGTGCTGTGGAGGAGAGTGAGG
AAGCAACTCATGAGCGTCGGTAAGGGAGGGATAAAGGAAAGCCACGTACG
ATCGCTCAACTCCCTCATCGCGGCGCACACCTTGGTGAAGGTCAAGGTGA
ATATTCCGTATGCCGACCTGGCAGAGGTGGGGCTCGAGCTAACCGGGAAG
GCAGGCGGGGCGGCTTCGGAGGGGGAGGGGGACGAAGACGCGACGTCCCC
GGGTGTCGGTGTTTCGGTGGTCAAGGTGAACCCCAACCAGAAGACCATCC
TGTTCGCCAACACGGAGTTCCTCGCCGCTCAAGCGAGAGGGGAGGTGAAT
ATTCCGTATGCCGACCTGGCAGAGGTGGGGCTCGAGCTAACCGGGAAGGC
AGGCGGGGCGGCTTCGGAGGGGGAGGGGGACGAAGACGCGACGTCCCCGG
GTGTCGGTGTTTCGGTGGTCAAGGTGAACCCCAACCAGAAGACCATCCTG
TTCGCCAACACGGAGTTCCTCGCCGCTCAAGCGAGAGGGGAG
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