mRNA_L-elsbetiae_contig5195.13281.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5195.13281.1
Unique NamemRNA_L-elsbetiae_contig5195.13281.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5195.13281.1 vs. uniprot
Match: A0A6H5K1G5_9PHAE (CRC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G5_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 2.100e-52
Identity = 81/97 (83.51%), Postives = 87/97 (89.69%), Query Frame = 2
Query:    2 GQHICSDACKCVNCLNSDAHGAERRAAVRELLCRSPHAFDAKFKTE-VLAANGGTGTSRAVVHNTGCGCSKSACLKRYCECFNGGIACSDKCRCKDC 289
            GQ +CSDAC+C NC NS  HG ERRAAVRELLCRSPHAFDAKFKTE VLA +GGT T+ A+VHNTGCGCSKSACLKRYCECFNGGIACS+KCRCKDC
Sbjct:   10 GQLVCSDACRCENCYNSAEHGVERRAAVRELLCRSPHAFDAKFKTEKVLATSGGTATASALVHNTGCGCSKSACLKRYCECFNGGIACSNKCRCKDC 106          
BLAST of mRNA_L-elsbetiae_contig5195.13281.1 vs. uniprot
Match: A0A2P6VRN3_9CHLO (Tesmin TSO1-like CXC 5 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VRN3_9CHLO)

HSP 1 Score: 95.1 bits (235), Expect = 9.300e-21
Identity = 48/91 (52.75%), Postives = 57/91 (62.64%), Query Frame = 2
Query:   20 DACKCVNCLNSDAHGAERRAAVRELLCRSPHAFDAKFKTEVLAANGGTGT-SRAVVHNTGCGCSKSACLKRYCECFNGGIACSDKCRCKDC 289
            DAC C+NC N+ AH + R+AAV  +L R+P+AF  K       A G  G  S    HN GC C KS CLK+YCECF  GIACSD C+C DC
Sbjct:  144 DACNCLNCHNNRAHESTRQAAVEAILERNPNAFRPKI------AGGSEGRHSGGARHNKGCNCKKSGCLKKYCECFQAGIACSDNCKCLDC 228          
BLAST of mRNA_L-elsbetiae_contig5195.13281.1 vs. uniprot
Match: A0A830D4A7_9LAMI (Protein tesmin/tso1-like cxc 5 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830D4A7_9LAMI)

HSP 1 Score: 94.7 bits (234), Expect = 1.300e-20
Identity = 45/93 (48.39%), Postives = 56/93 (60.22%), Query Frame = 2
Query:   11 ICSDACKCVNCLNSDAHGAERRAAVRELLCRSPHAFDAKFKTEVLAANGGTGTSRAVVHNTGCGCSKSACLKRYCECFNGGIACSDKCRCKDC 289
            I  D C C+NC N   H  +R+ ++  +L R+P+AF  K     +AAN   G +  V HN GC C KS CLKRYCECF   I CSDKC+C DC
Sbjct:  137 IYCDGCNCINCHNKMEHEDDRKGSIDAILERNPNAFRPK-----IAANSPHGATDGVEHNKGCNCKKSGCLKRYCECFQANILCSDKCKCVDC 224          
BLAST of mRNA_L-elsbetiae_contig5195.13281.1 vs. uniprot
Match: A0A7S0DST4_9EUKA (Hypothetical protein n=2 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DST4_9EUKA)

HSP 1 Score: 93.2 bits (230), Expect = 2.100e-20
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 2
Query:   14 CSDACKCVNCLNSDAHGAERRAAVRELLCRSPHAFDAKFKTEVLAANGGTGTSRAVVHNTGCGCSKSACLKRYCECFNGGIACSDKCRCKDC 289
            C D C C NC N++    ER+ A+R  L R+PHAF  K  T  +   G    + A+VHN GC C KS C K+YCECF  GI CS++C+C DC
Sbjct:   49 CRD-CNCKNCRNNEEFQKERQHAIRYTLERNPHAFLPKIATSPMREAGARDPASALVHNKGCQCKKSHCRKKYCECFQAGILCSERCKCHDC 139          
BLAST of mRNA_L-elsbetiae_contig5195.13281.1 vs. uniprot
Match: A0A6H5JPL0_9PHAE (CRC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL0_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 4.600e-20
Identity = 46/95 (48.42%), Postives = 59/95 (62.11%), Query Frame = 2
Query:    5 QHICSDACKCVNCLNSDAHGAERRAAVRELLCRSPHAFDAKFKTEVLAANGGTGTSRAVVHNTGCGCSKSACLKRYCECFNGGIACSDKCRCKDC 289
            Q +C+ +C C +C N+    + R  A+  +L R+P AFDAKF+         T    AVVH TGC C KSACLK+YCECFN G+ACS+KC C  C
Sbjct:  398 QVVCTASCNCHHCYNNSNQESMRLQAINGVLERNPAAFDAKFRE--------TEKHDAVVHKTGCKCRKSACLKKYCECFNKGVACSEKCNCVAC 484          
BLAST of mRNA_L-elsbetiae_contig5195.13281.1 vs. uniprot
Match: D8LP28_ECTSI (TSO1 transcription factor (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP28_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 6.150e-20
Identity = 46/95 (48.42%), Postives = 59/95 (62.11%), Query Frame = 2
Query:    5 QHICSDACKCVNCLNSDAHGAERRAAVRELLCRSPHAFDAKFKTEVLAANGGTGTSRAVVHNTGCGCSKSACLKRYCECFNGGIACSDKCRCKDC 289
            Q +C+ +C C +C N+    + R  A+  +L R+P AFDAKF+         T    AVVH TGC C KSACLK+YCECFN G+ACS+KC C  C
Sbjct:   44 QVVCTASCNCHHCYNNANQESMRLQAINGVLERNPAAFDAKFRE--------TEKHDAVVHKTGCKCRKSACLKKYCECFNKGVACSEKCNCVGC 130          
BLAST of mRNA_L-elsbetiae_contig5195.13281.1 vs. uniprot
Match: D7FZ03_ECTSI (CRC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ03_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 7.970e-20
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 2
Query:    2 GQHICSDACKCVNCLNSDAHGAERRAAVRELLCRSPHAFDAKFKTE 139
            GQ +CSDAC+C NC NS  HG ERRAAVRELLCRSPHAFDAKFKTE
Sbjct:   12 GQLVCSDACRCENCYNSAEHGVERRAAVRELLCRSPHAFDAKFKTE 57          
BLAST of mRNA_L-elsbetiae_contig5195.13281.1 vs. uniprot
Match: A0A8J5XVP9_DIALT (CRC domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XVP9_DIALT)

HSP 1 Score: 92.0 bits (227), Expect = 7.970e-20
Identity = 45/93 (48.39%), Postives = 54/93 (58.06%), Query Frame = 2
Query:   11 ICSDACKCVNCLNSDAHGAERRAAVRELLCRSPHAFDAKFKTEVLAANGGTGTSRAVVHNTGCGCSKSACLKRYCECFNGGIACSDKCRCKDC 289
            +CS  C CV CLN D H A R  A +  L R+P AF  K +  + AA      +    H  GC C KS CLK+YCECF  GIACSDKC+C +C
Sbjct:  169 LCSAGCSCVGCLNLDQHAAVRDDARKATLQRNPTAFKPKIQDALAAAT--EAQAPTATHVRGCFCKKSGCLKKYCECFGAGIACSDKCKCDNC 259          
BLAST of mRNA_L-elsbetiae_contig5195.13281.1 vs. uniprot
Match: A0A7S1C0F8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C0F8_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.110e-19
Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = 2
Query:   11 ICSDA-CKCVNCLNSDAHGAERRAAVRELLCRSPHAFDAKFKTEVLAANGGTGTSRAVVHNTGCGCSKSACLKRYCECFNGGIACSDKCRCKDC 289
            +C  A C+C+ C N++AH + R+ A+  +L R+P AFD KF  +  +A  G+ +++   H  GC C KSACLK+YCECFN G+ CS  CRC +C
Sbjct:  317 LCDSAICRCLVCYNTEAHYSIRKEAIAAILERNPTAFDKKFMDKTTSA--GSRSTKTGAHKVGCKCRKSACLKKYCECFNMGVKCSQNCRCINC 408          
BLAST of mRNA_L-elsbetiae_contig5195.13281.1 vs. uniprot
Match: A0A7S3CVV7_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3CVV7_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 2.060e-19
Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:   11 ICSDACKCVNCLNSDAHGAERRAAVRELLCRSPHAFDAKFKTEVLAANGGTGTSRAV-------VHNTGCGCSKSACLKRYCECFNGGIACSDKCRCKDC 289
            +C+  C C NC N D+H  ER A +  +L R P+AF  K K  V+    G G    V       VH  GC C KS C K+YCECF  G+ C+D+C+C+ C
Sbjct:  152 MCTVECNCQNCHNCDSHNGERMAVINTILERDPNAFKPKVKRGVVQGGAGEGGGAVVPGGDDQHVHIKGCRCKKSGCTKKYCECFQAGVKCTDRCKCEKC 251          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5195.13281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1G5_9PHAE2.100e-5283.51CRC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A2P6VRN3_9CHLO9.300e-2152.75Tesmin TSO1-like CXC 5 n=1 Tax=Micractinium conduc... [more]
A0A830D4A7_9LAMI1.300e-2048.39Protein tesmin/tso1-like cxc 5 n=1 Tax=Phtheirospe... [more]
A0A7S0DST4_9EUKA2.100e-2047.83Hypothetical protein n=2 Tax=Amorphochlora amoebif... [more]
A0A6H5JPL0_9PHAE4.600e-2048.42CRC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LP28_ECTSI6.150e-2048.42TSO1 transcription factor (Partial) (Fragment) n=1... [more]
D7FZ03_ECTSI7.970e-2082.61CRC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A8J5XVP9_DIALT7.970e-2048.39CRC domain-containing protein n=2 Tax=Diacronema l... [more]
A0A7S1C0F8_9STRA1.110e-1945.74Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S3CVV7_9EUKA2.060e-1942.00Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5195contigL-elsbetiae_contig5195:9151..10107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size293
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816531.927929-CDS-L-elsbetiae_contig5195:9150..92891622816531.927929-CDS-L-elsbetiae_contig5195:9150..9289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5195 9151..9289 +
1691683627.5501988-CDS-L-elsbetiae_contig5195:9150..92891691683627.5501988-CDS-L-elsbetiae_contig5195:9150..9289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5195 9151..9289 +
1622816531.9399896-CDS-L-elsbetiae_contig5195:9953..101051622816531.9399896-CDS-L-elsbetiae_contig5195:9953..10105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5195 9954..10105 +
1691683627.561621-CDS-L-elsbetiae_contig5195:9953..101051691683627.561621-CDS-L-elsbetiae_contig5195:9953..10105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5195 9954..10105 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5195.13281.1prot_L-elsbetiae_contig5195.13281.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5195 9151..10105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5195.13281.1

>prot_L-elsbetiae_contig5195.13281.1 ID=prot_L-elsbetiae_contig5195.13281.1|Name=mRNA_L-elsbetiae_contig5195.13281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
GAAHLLRRLQVRQLPQLRRSRRGAAGRRAGAPLPQPPRLRRQVQDGGACG
ERGYRHLARGGPQHRLRVQQVGLPEAVLRVLQRRHRVLRQVPVQGLQ
back to top

mRNA from alignment at L-elsbetiae_contig5195:9151..10107+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5195.13281.1 ID=mRNA_L-elsbetiae_contig5195.13281.1|Name=mRNA_L-elsbetiae_contig5195.13281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=957bp|location=Sequence derived from alignment at L-elsbetiae_contig5195:9151..10107+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCAGCACATCTGCTCCGACGCCTGCAAGTGCGTCAACTGCCTCAACT CCGACGCTCACGGCGCGGAGCGGCGGGCCGCCGTGCGGGAGCTCCTCTGC CGCAGCCCCCACGCCTTCGACGCCAAGTTCAAGACGGAGGTGCGCTGCGT GGCTCTGTCGGCCTTGCTTTTATACCTACACAGTAGTACACAAAATAATA GTAACAACTAGCCGATGTGACGGACGCTATAAACGGAATATTGTTTTTTC GCACGAATGGACGTCAGTATTGTAACAGAACTTGATAACAGTAGCAATAA CTTGGCTCTCCAATCGATCCCTAGCAGCAACAGTAGTAGCTTTGTGTTGT GTTGTCGCGTGAATCGTGTGGTAGTGCTGTGAGAAAAGACACAAACCAGA GCATGGAGTGTGTGTATGATGCAAGTTTCTTGGAGGAAATTGGCTGATAT TTTTCTAAACCCAGGCCCTTTTTTGTTCAGTTTTCAGTATACCCTTGCAA GGGGGGGTTAAATGTCCTGTGATCACGGGAATCGACCGCGTCAGTGTTGG ATTAGTACGGACTCACGGGAGGTACTGGATAGAGAGATCGGAATGGTTTT TAACGTGAGAAGACAACGACAACGATGCATCGTTCTAGACTAGACTATAC TTTTAATTAATAGGAGTATATACTCCGTATACAAATGTCAGCAGTCTACG TCCGGTCTGTGAAAATACATTTGTCCTTCTTTCCTCGATCGAAGACACCT ACCCACCTGTACGCTGTACGCACACATCCCGCCGATCTTTTTTCACGCAA AAGGTGCTTGCGGCGAACGGGGGTACCGGCACCTCGCGCGCGGTGGTCCA CAACACCGGTTGCGGGTGCAGCAAGTCGGCCTGCCTGAAGCGGTACTGCG AGTGCTTCAACGGCGGCATCGCGTGCTCCGACAAGTGCCGGTGCAAGGAC TGCAGGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5195:9151..10107+

>mRNA_L-elsbetiae_contig5195.13281.1 ID=mRNA_L-elsbetiae_contig5195.13281.1|Name=mRNA_L-elsbetiae_contig5195.13281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig5195:9151..10107+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCAGCACATCTGCTCCGACGCCTGCAAGTGCGTCAACTGCCTCAACT
CCGACGCTCACGGCGCGGAGCGGCGGGCCGCCGTGCGGGAGCTCCTCTGC
CGCAGCCCCCACGCCTTCGACGCCAAGTTCAAGACGGAGGGGGCAGCACA
TCTGCTCCGACGCCTGCAAGTGCGTCAACTGCCTCAACTCCGACGCTCAC
GGCGCGGAGCGGCGGGCCGCCGTGCGGGAGCTCCTCTGCCGCAGCCCCCA
CGCCTTCGACGCCAAGTTCAAGACGGAGGTGCTTGCGGCGAACGGGGGTA
CCGGCACCTCGCGCGCGGTGGTCCACAACACCGGTTGCGGGTGCAGCAAG
TCGGCCTGCCTGAAGCGGTACTGCGAGTGCTTCAACGGCGGCATCGCGTG
CTCCGACAAGTGCCGGTGCAAGGACTGCAGGTGCTTGCGGCGAACGGGGG
TACCGGCACCTCGCGCGCGGTGGTCCACAACACCGGTTGCGGGTGCAGCA
AGTCGGCCTGCCTGAAGCGGTACTGCGAGTGCTTCAACGGCGGCATCGCG
TGCTCCGACAAGTGCCGGTGCAAGGACTGCAG
back to top