mRNA_L-elsbetiae_contig5193.13278.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5193.13278.1
Unique NamemRNA_L-elsbetiae_contig5193.13278.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5193.13278.1 vs. uniprot
Match: D8LEX7_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX7_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 1.100e-54
Identity = 86/113 (76.11%), Postives = 95/113 (84.07%), Query Frame = 1 
Query:    1 DELRVIPACEHHFHKDCIDPWLETKAVCAYCKTTVEAKATCCDRIFRSASSRLGLNLVAPNNVLFSSSRRTYTAEDHQHVMGPTLPAAYGRSEMDYVGSAVAPRQGSTDIEAG 339
            DELR+IP C H FHK+CIDPWLETKAVCAYCK  VEA+ TCCDR++RS S RLG+NLVAP  + FSSSRRTYT ED Q  MGPTLPA+YG SEMDYVGSAVAPRQ S D+EAG
Sbjct:  207 DELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRVYRSVSDRLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQASVDVEAG 319
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BLAST of mRNA_L-elsbetiae_contig5193.13278.1 vs. uniprot
Match: A0A6H5KYP0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYP0_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 1.130e-53
Identity = 87/113 (76.99%), Postives = 96/113 (84.96%), Query Frame = 1 
Query:    1 DELRVIPACEHHFHKDCIDPWLETKAVCAYCKTTVEAKATCCDRIFRSASSRLGLNLVAPNNVLFSSSRRTYTAEDHQHVMGPTLPAAYGRSEMDYVGSAVAPRQGSTDIEAG 339
            DELR+IP C H FHK+CIDPWLETKAVCAYCK  VEA+ TCCDRI+RS S+RLG+NLVAP  + FSSSRRTYT ED Q  MGPTLPA+YG SEMDYVGSAVAPRQ S D+EAG
Sbjct:  400 DELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRIYRSVSNRLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQASVDVEAG 512
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BLAST of mRNA_L-elsbetiae_contig5193.13278.1 vs. uniprot
Match: A0A835ZK41_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK41_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.280e-7
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 DELRVIPACEHHFHKDCIDPWLETKAVCAYCKTTV 105
            D+LRV+P C H +HK C+DPWLETKA+C  CK  V
Sbjct:  262 DQLRVVPHCFHQYHKACLDPWLETKAICPLCKQRV 296
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BLAST of mRNA_L-elsbetiae_contig5193.13278.1 vs. uniprot
Match: A0A836C7Z7_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Z7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.100e-7
Identity = 20/35 (57.14%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 DELRVIPACEHHFHKDCIDPWLETKAVCAYCKTTV 105
            D LRV+P C HH+HK C+DPWLE++ +C  CK  V
Sbjct:  132 DVLRVVPRCNHHYHKACLDPWLESRGICPLCKQLV 166
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BLAST of mRNA_L-elsbetiae_contig5193.13278.1 vs. uniprot
Match: A0A8J5G125_ZINOF (RING-type domain-containing protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5G125_ZINOF)

HSP 1 Score: 55.8 bits (133), Expect = 1.600e-6
Identity = 20/40 (50.00%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:    1 DELRVIPACEHHFHKDCIDPWLETKAVCAYCKTTVEAKAT 120
            DELR++PAC H FH  C+DPWL +   C  C+T++   AT
Sbjct:  150 DELRLLPACRHAFHSQCVDPWLRSAPSCPLCRTSITLPAT 189
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BLAST of mRNA_L-elsbetiae_contig5193.13278.1 vs. uniprot
Match: B4FM78_MAIZE (E3 ubiquitin-protein ligase ATL6 n=2 Tax=Zea mays TaxID=4577 RepID=B4FM78_MAIZE)

HSP 1 Score: 55.1 bits (131), Expect = 3.030e-6
Identity = 23/39 (58.97%), Postives = 26/39 (66.67%), Query Frame = 1 
Query:    1 DELRVIPACEHHFHKDCIDPWLETKAVCAYCKTTVEAKA 117
            DELRV+PAC H FH DCIDPWL   A C  C+  + A A
Sbjct:  158 DELRVLPACCHVFHPDCIDPWLAGAATCPLCRADLTAAA 196
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BLAST of mRNA_L-elsbetiae_contig5193.13278.1 vs. uniprot
Match: C0HE73_MAIZE (E3 ubiquitin-protein ligase ATL6 n=3 Tax=Zea mays TaxID=4577 RepID=C0HE73_MAIZE)

HSP 1 Score: 54.3 bits (129), Expect = 5.720e-6
Identity = 28/59 (47.46%), Postives = 31/59 (52.54%), Query Frame = 1 
Query:    1 DELRVIPACEHHFHKDCIDPWLETKAVCAYCKTTVEAKATCCDRIFRSASSRLGLNLVA 177
            DELRV+PAC H FH DCIDPWL     C  C+  + A A        S  S  G NL A
Sbjct:  162 DELRVLPACCHVFHPDCIDPWLAGAVTCPLCRADLTAAAAPYYPPASSDGSGSGSNLAA 220
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BLAST of mRNA_L-elsbetiae_contig5193.13278.1 vs. uniprot
Match: A0A2T7EV59_9POAL (RING-type domain-containing protein n=4 Tax=Panicum TaxID=4539 RepID=A0A2T7EV59_9POAL)

HSP 1 Score: 53.1 bits (126), Expect = 6.930e-6
Identity = 21/40 (52.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 DELRVIPACEHHFHKDCIDPWLETKA-VCAYCKTTVEAKA 117
            +E+RV+PAC H FH++C+D WL T+A  C  C+ TV A+A
Sbjct:  138 EEVRVLPACRHGFHRECVDRWLLTRAPTCPVCRATVAARA 177
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BLAST of mRNA_L-elsbetiae_contig5193.13278.1 vs. uniprot
Match: K4ABQ5_SETIT (RING-type domain-containing protein n=2 Tax=Setaria TaxID=4554 RepID=K4ABQ5_SETIT)

HSP 1 Score: 53.9 bits (128), Expect = 7.680e-6
Identity = 26/58 (44.83%), Postives = 31/58 (53.45%), Query Frame = 1 
Query:    1 DELRVIPACEHHFHKDCIDPWLETKAVCAYCKTTVE------AKATCCDRIFRSASSR 156
            DELRV+PAC H FH DCIDPWL+    C  C+  +       A A  CD   R  + R
Sbjct:  152 DELRVLPACCHVFHPDCIDPWLDGAVTCPLCRADLTVAPPPAAPAESCDLTARQGAVR 209
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BLAST of mRNA_L-elsbetiae_contig5193.13278.1 vs. uniprot
Match: ATL31_ORYSJ (E3 ubiquitin-protein ligase Os03g0188200 n=10 Tax=Oryza TaxID=4527 RepID=ATL31_ORYSJ)

HSP 1 Score: 53.5 bits (127), Expect = 1.040e-5
Identity = 21/37 (56.76%), Postives = 24/37 (64.86%), Query Frame = 1 
Query:    1 DELRVIPACEHHFHKDCIDPWLETKAVCAYCKTTVEA 111
            DELRV+PAC H FH DCIDPWL     C  C+  + A
Sbjct:  144 DELRVLPACCHVFHPDCIDPWLAAAVTCPLCRANLTA 180
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5193.13278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEX7_ECTSI1.100e-5476.11RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KYP0_9PHAE1.130e-5376.99RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A835ZK41_9STRA1.280e-762.86RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A836C7Z7_9STRA2.100e-757.14RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A8J5G125_ZINOF1.600e-650.00RING-type domain-containing protein n=2 Tax=Zingib... [more]
B4FM78_MAIZE3.030e-658.97E3 ubiquitin-protein ligase ATL6 n=2 Tax=Zea mays ... [more]
C0HE73_MAIZE5.720e-647.46E3 ubiquitin-protein ligase ATL6 n=3 Tax=Zea mays ... [more]
A0A2T7EV59_9POAL6.930e-652.50RING-type domain-containing protein n=4 Tax=Panicu... [more]
K4ABQ5_SETIT7.680e-644.83RING-type domain-containing protein n=2 Tax=Setari... [more]
ATL31_ORYSJ1.040e-556.76E3 ubiquitin-protein ligase Os03g0188200 n=10 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5193contigL-elsbetiae_contig5193:3130..4634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score187.2
Seed ortholog evalue4.9e-45
Seed eggNOG ortholog2880.D8LEX7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-21_005940.1
Exons3
Model size390
Cds size390
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5193.13278.1prot_L-elsbetiae_contig5193.13278.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5193 3130..4634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816531.647791-CDS-L-elsbetiae_contig5193:3129..31741622816531.647791-CDS-L-elsbetiae_contig5193:3129..3174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5193 3130..3174 +
1691683627.343249-CDS-L-elsbetiae_contig5193:3129..31741691683627.343249-CDS-L-elsbetiae_contig5193:3129..3174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5193 3130..3174 +
1622816531.6598911-CDS-L-elsbetiae_contig5193:3907..40901622816531.6598911-CDS-L-elsbetiae_contig5193:3907..4090Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5193 3908..4090 +
1691683627.3543217-CDS-L-elsbetiae_contig5193:3907..40901691683627.3543217-CDS-L-elsbetiae_contig5193:3907..4090Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5193 3908..4090 +
1622816531.673731-CDS-L-elsbetiae_contig5193:4472..46341622816531.673731-CDS-L-elsbetiae_contig5193:4472..4634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5193 4473..4634 +
1691683627.365751-CDS-L-elsbetiae_contig5193:4472..46341691683627.365751-CDS-L-elsbetiae_contig5193:4472..4634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5193 4473..4634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5193.13278.1

>prot_L-elsbetiae_contig5193.13278.1 ID=prot_L-elsbetiae_contig5193.13278.1|Name=mRNA_L-elsbetiae_contig5193.13278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
DELRVIPACEHHFHKDCIDPWLETKAVCAYCKTTVEAKATCCDRIFRSAS
SRLGLNLVAPNNVLFSSSRRTYTAEDHQHVMGPTLPAAYGRSEMDYVGSA
VAPRQGSTDIEAGGAGAVAEAGSGEAATAT
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mRNA from alignment at L-elsbetiae_contig5193:3130..4634+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5193.13278.1 ID=mRNA_L-elsbetiae_contig5193.13278.1|Name=mRNA_L-elsbetiae_contig5193.13278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1505bp|location=Sequence derived from alignment at L-elsbetiae_contig5193:3130..4634+ (Laminarionema elsbetiae ELsaHSoW15)
GACGAGCTCCGAGTCATCCCCGCGTGCGAGCACCACTTCCACAAGGTGCG
CCGGCGGCGTTTTGGTTGTTGCTGTTGTTGTGTTTCTCTGTTTGGCTGGG
TGACTTGGCGGTGGCGTTGTGCTCGGTGGGTGGGTGGGTGGGTGGGTGAG
TAGTCTCGCTCTGCTTTTTGCGCGGGTGTGGCGGTGCACTAGCCCCAGTT
TCTCGTACATGGCGATATATGGTAGTCCATATGATACTCCCCGGCACCAG
ACCTTGTTTGCTCGTGCCGGCGACAGGCAACAGCCGACAGGGTTGAAATA
ACCATTAGTCCCCGCGTTGAGTGTGCTCGACGCGAGCACATAGAACACCC
GCCAAAAACACAAGGCACTGCGATTACTTGTGTATGTACCAGCAGACGCA
CACTAGTGGGCGGGCGCCCGTTTTTCCCGCTTCCGCCCTTTGCTGTCTAA
ATCCGGGGGGGGGCGTATACCCGCGGTACCCGCTGCCGCGCCCTTTTTTT
TGCTGCCTCAATCCTCCACGTCTACGGTAAGTAGCACAGGCAACAAGCAC
GCACCAGGACGGGAGGGGAGGGGGTAAATAATTGCTTTTGGTATGAGATG
CTGAAATGTATGTGTCCCGTGGAAATCAGACCAAGGTTCTCGCCCGCTTG
CCCCCGCACACCCACGAGGGCGGCACAAATCCCACTTTCCGCCGGAAGAG
AAAGGATATTTTTTTACCCTTTTTTTTGTGTGCTCGGCTGGCTCTCCTTT
CTCTCGGTGCTTGCTCGCTTGCTTGCAGGACTGCATCGACCCGTGGCTGG
AGACCAAGGCGGTGTGCGCTTACTGCAAGACCACCGTGGAGGCGAAGGCG
ACGTGCTGCGACCGCATCTTCCGATCCGCCTCTTCGCGCTTGGGGCTCAA
CCTCGTGGCGCCCAACAACGTCCTATTTTCCAGCAGTCGCCGCACTTACA
CCGCCGAAGACGTGAGACACGCGCGCGCACACACACACAGAAAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGCGCGCGCTTCGGGTTGTTTCCGATCACT
TTTGTAGTGTGATTGGCTTTTTTGTGTATCTACTACATGAATGGAAATTG
TTTCCGGCCCTTTTTTTGTGTTCGCGGGGGTCTGCTGTCGTTCCTTGTAA
CTGTTGTGGCTGTTGCTATTTTTCCCTTTGCTGTCTGTTCGTTCGTCATT
TACGTACGTACGTACGCACGCACAACATACACCAGTGCCGGCAAGTTCCA
ACGCGACCCCCCCGCCCCTCGCCCTCGCCGCCGTGTTCTATGTGCCGCCT
GTGACGACGACTCGAAACAACAAAACGGAAACGGAATGAACAGCATCAGC
ACGTGATGGGACCAACCCTGCCGGCCGCGTACGGTCGCTCGGAAATGGAC
TACGTGGGGTCGGCCGTGGCGCCGCGGCAGGGCTCCACGGACATAGAAGC
AGGCGGAGCCGGGGCGGTGGCGGAAGCGGGGAGCGGGGAGGCGGCGACAG
CGACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5193:3130..4634+

>mRNA_L-elsbetiae_contig5193.13278.1 ID=mRNA_L-elsbetiae_contig5193.13278.1|Name=mRNA_L-elsbetiae_contig5193.13278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig5193:3130..4634+ (Laminarionema elsbetiae ELsaHSoW15)
GACGAGCTCCGAGTCATCCCCGCGTGCGAGCACCACTTCCACAAGGACGA
GCTCCGAGTCATCCCCGCGTGCGAGCACCACTTCCACAAGGACTGCATCG
ACCCGTGGCTGGAGACCAAGGCGGTGTGCGCTTACTGCAAGACCACCGTG
GAGGCGAAGGCGACGTGCTGCGACCGCATCTTCCGATCCGCCTCTTCGCG
CTTGGGGCTCAACCTCGTGGCGCCCAACAACGTCCTATTTTCCAGCAGTC
GCCGCACTTACACCGCCGAAGACGACTGCATCGACCCGTGGCTGGAGACC
AAGGCGGTGTGCGCTTACTGCAAGACCACCGTGGAGGCGAAGGCGACGTG
CTGCGACCGCATCTTCCGATCCGCCTCTTCGCGCTTGGGGCTCAACCTCG
TGGCGCCCAACAACGTCCTATTTTCCAGCAGTCGCCGCACTTACACCGCC
GAAGACCATCAGCACGTGATGGGACCAACCCTGCCGGCCGCGTACGGTCG
CTCGGAAATGGACTACGTGGGGTCGGCCGTGGCGCCGCGGCAGGGCTCCA
CGGACATAGAAGCAGGCGGAGCCGGGGCGGTGGCGGAAGCGGGGAGCGGG
GAGGCGGCGACAGCGACGCATCAGCACGTGATGGGACCAACCCTGCCGGC
CGCGTACGGTCGCTCGGAAATGGACTACGTGGGGTCGGCCGTGGCGCCGC
GGCAGGGCTCCACGGACATAGAAGCAGGCGGAGCCGGGGCGGTGGCGGAA
GCGGGGAGCGGGGAGGCGGCGACAGCGACG
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