mRNA_L-elsbetiae_contig5191.13276.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5191.13276.1 vs. uniprot
Match: D7FMM1_ECTSI (Topo-VIb_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMM1_ECTSI) HSP 1 Score: 342 bits (876), Expect = 1.880e-109 Identity = 182/253 (71.94%), Postives = 212/253 (83.79%), Query Frame = 1 Query: 220 INFADEDVAVFECQATDSSGSWVTAGVAVERELRSPSRRKVLWDFGSGETTVPLFVHRFANGVPMLDTNTSAACALVAGAASKASWANLGLKISSSRVQRRDGRLRFTLSEAPTPLKVKGGEDWSALSDIKSVHVAVSANSEVIPYTSLRKDAIAHREGYVSATESAVRQGLVCLRSRTSGGFRSAFEAANHMLHQELLPLAAAGVASMVSHSADVSFQKKCLQALGVGNEYVQEKRLCDLLQDELTESVRQE 978 ++FA EDVAVFECQ +SS +WV A VAVER + + GETTVPLFVHRFANGVPMLDTNTSAACALVAG ASK SW NLGLKISS+RV+RR+GRLRF LSEAPTPLKV GG DWSAL+DIK+VHVAV+ANS+ +P+TSLRKDAIAH+EGYVSA ESAVRQGL+ L +R SGGFRSA EAA M+ ++L+PLAA+ VASMVS SA+ +FQKKCLQALGVG+EYVQE+RL DLL+ EL E++RQE Sbjct: 358 LDFAAEDVAVFECQGKNSS-TWVMAAVAVERAPPTRDQGTFTQQADRGETTVPLFVHRFANGVPMLDTNTSAACALVAGVASKGSWRNLGLKISSARVRRREGRLRFVLSEAPTPLKVNGGADWSALADIKAVHVAVTANSQTVPFTSLRKDAIAHKEGYVSAAESAVRQGLLSLSNRESGGFRSAAEAAKDMMQEDLIPLAASSVASMVSRSANANFQKKCLQALGVGHEYVQERRLSDLLRFELQENIRQE 609 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5191.13276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5191.13276.1 >prot_L-elsbetiae_contig5191.13276.1 ID=prot_L-elsbetiae_contig5191.13276.1|Name=mRNA_L-elsbetiae_contig5191.13276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=323bp MHGAGPHQSLGWQQQQRQQHPSASTPTQIENSDESLSFSHGVGAAESASSback to top mRNA from alignment at L-elsbetiae_contig5191:5369..12442- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5191.13276.1 ID=mRNA_L-elsbetiae_contig5191.13276.1|Name=mRNA_L-elsbetiae_contig5191.13276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7074bp|location=Sequence derived from alignment at L-elsbetiae_contig5191:5369..12442- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5191:5369..12442- >mRNA_L-elsbetiae_contig5191.13276.1 ID=mRNA_L-elsbetiae_contig5191.13276.1|Name=mRNA_L-elsbetiae_contig5191.13276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1938bp|location=Sequence derived from alignment at L-elsbetiae_contig5191:5369..12442- (Laminarionema elsbetiae ELsaHSoW15)back to top |