mRNA_L-elsbetiae_contig519.13275.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig519.13275.1 vs. uniprot
Match: D8LAT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT1_ECTSI) HSP 1 Score: 620 bits (1600), Expect = 1.310e-204 Identity = 483/978 (49.39%), Postives = 555/978 (56.75%), Query Frame = 1 Query: 70 ASDTQQDESWRQYGMKKLGGLVFSSRAAAEMPVEPEPTLPAGFSATLNAEEEEIYPAEAKIKVLVAEGSLGGRNRRQAAELHQALQQVVGAAAIYNHLLTKHGGVGTRPKHVGASGSSNGAVEDKATAGGDVDADATTPKSVKITACDCGGAMGGCKAISSLLKDEMDKVNAGAESERRGAMLKKFKRVERRSGGLCNPDLLEKVVRSSSGHGPSSRPSSPAAHPSHQR------PPPS-DPKGLGAATPTPLSNLVVVDVEDDPDAAAAG----SGAVAS--QDQPWAEDMLCRGVRKRHAAILRTRGRALAKGLARMLKGXXXXXXXVAARLPPWEEEEEGEEERGA--DEQAELNRIQSRSNVFGSPTH-------------------------GRSSSHGSTVSVDMSEDTE------SANGSAAGRPPTPSSSXXXXXXXXXXXXXXXXXPXXXXXXXVAAPIYTTPSPRGAXXXXXXXXXXXXXXXXXXXXXXXXXADDVKSRRQDWKLDAQELSLIRKEEERVMKPDVLARLLAKGAGLGCLQQADFWDVFARLEVATRTEALLNIAVRGGRGCAARSGRMGRELCISLTSVVLEAINTVEQAQRRSQVPSSPAKSCPSPSPQQRRSGIVGSNRGDEALRENPSATQPVERKRPSSARMSRDSMLEAQGAGGGARARSGSFQLPPTKRLVKGESVAGAAGAVKRFYKEDPGLKDLDRREEEFRKAIYVNRRALATRLMRLTRDAPLCSQVLGAFADDSSKKAAANSVERVAAXXXSSA----------KNLASRFASSPGVFSREGGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXVVWNPPTSGDNSSDATEKEAGSRGTPAAXXXXXXXXXXXXXXXXXTGDGSGKGSSGVSSSCA------KSHPSSSLSVVSSTSTELLSDRAEDSDTTPGSSXXXXXXXXXXXXXVQDKRSASVVVDKSTVAEIYK 2817 +SD Q D S R +G LGGLVF+ EPEPTLP+GFSATLNAEEE+IYPAEAKI+VLVAEGSL GRNRRQAAELHQALQQVVGAAAIYNHLL KHGG+GT+PK S + A A A T K+ C CGG G CKAISSLLK EMDKV A AE ER+G MLKKFK+VERRSGGLCNPDLLE +VRS+ G G S SSP+A PP S D KG AA L++LVVVDVE D AG GAV+S QD PWAEDMLCR VRKRHAA+L+TRGRALAKGLARMLKG XXXVA+RLPPWEE E+ +E++ +E AEL+RI+SR N+F +PTH ++S + +S DT S+NGSAA R P VAA XXXXXXXXXXXXXXXX A+ V+SRRQDWKL AQELSLI+KEEERVMKPDVL LLAKGA LGCLQQADFWDVFARLEVATRTEALLNIA+RGGRGCAARSGRMGRELCI+LTSVVLEA+N VE GS+ G EA +N GG ARARSGS + +R+VKGESVAG + FYKEDPGLKDLDRREEEFRKAIYVNRRALATRLMRLTRDAPLCS+VLG F DD+ + + + S+ +N +SRFA+SPG + E VW + G++ + + G+ G AA TGD G G SSCA +SHPSSS SV S T+TE LS+ EDSD P S+ +K+ V VD++TV EI + Sbjct: 28 SSDAQGDASTRGWG-SYLGGLVFARAKEPAPASEPEPTLPSGFSATLNAEEEKIYPAEAKIRVLVAEGSLLGRNRRQAAELHQALQQVVGAAAIYNHLLVKHGGLGTKPKECKTSNDTGAAA-----------AVAGTEKNDNRMVCGCGGGSGSCKAISSLLKSEMDKVVAAAEKERKGEMLKKFKQVERRSGGLCNPDLLENIVRSTGGEG--SGESSPSAXXXXXXXXXXXXPPRSPDHKGQDAAIRA-LNSLVVVDVEKDERGGIAGVGGSGGAVSSGAQDVPWAEDMLCRSVRKRHAAVLKTRGRALAKGLARMLKGVSNDXXXVASRLPPWEECEDDDEDKPTPQEEGAELDRIRSRGNIFSAPTHEXXXXXXXXXXXXXXXXXXXXXSYVSAATSEDGNERLSLSSDTAPTAASISSNGSAAIRSP------------------------------VAAMAXXXXXXXSPGSDAVPAAXXXXXXXXXXXXXXXXAANCVRSRRQDWKLSAQELSLIKKEEERVMKPDVLTTLLAKGASLGCLQQADFWDVFARLEVATRTEALLNIAIRGGRGCAARSGRMGRELCINLTSVVLEALNAVE-----------------------------GSDFGLEAGMDN----------------------------GGAARARSGSVGMLAVRRVVKGESVAGKSRV---FYKEDPGLKDLDRREEEFRKAIYVNRRALATRLMRLTRDAPLCSRVLGTFVDDTQRARTPTKASKPQSSPRSTGVRTPQGGAAPQNESSRFATSPGKTAEE----------------------------VDTAVWKSSSVGESGAG---RGGGAPGAAAAAVDLL------------TGDDVTVGGEG--SSCAADRGSTESHPSSSGSVTS-TNTEPLSEGTEDSDNAPASTSPARQQRKQQQEGPHEKK---VAVDQATVEEILQ 851
BLAST of mRNA_L-elsbetiae_contig519.13275.1 vs. uniprot
Match: A0A6H5KYX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYX3_9PHAE) HSP 1 Score: 469 bits (1207), Expect = 5.530e-149 Identity = 419/809 (51.79%), Postives = 479/809 (59.21%), Query Frame = 1 Query: 568 MDKVNAGAESERRGAMLKKFKRVERRSGGLCNPDLLEKVVRSSSGHGPSSRPSSPAAHPSHQR------PPPS-DPKGLGAATPTPLSNLVVVDVEDDPDAAAAG----SGAVAS--QDQPWAEDMLCRGVRKRHAAILRTRGRALAKGLARMLKGXXXXXXXVAARLPPWEEEEEGEEERGADEQAELNRIQSRSNVFGSPTH---------------GRSSSHGSTVSVDMSEDTESANGSAAGRPPTPSSSXXXXXXXXXXXXXXXXXPXXXXXXXVAAPIYTTPSPRGAXXXXXXXXXXXXXXXXXXXXXXXXXADDVKSRRQDWKLDAQELSLIRKEEERVMKPDVLARLLAKGAGLGCLQQADFWDVFARLEVATRTEALLNIAVRGGRGCAARSGRMGRELCISLTSVVLEAINTVEQAQRRSQVPSSPAKSCPSPSPQQRRSGIVGSNRGDEALRENPSATQPVE-RKRPSSARMSRDSM--LEAQGAGGG-ARARSGSFQLPPTKRLVKGESVAGAAGAVKRFYKEDPGLKDLDRREEEFRKAIYVNRRALATRLMRLTRDAPLCSQVLGAFADDSSKKAAANSVERVAAXXXSSA----------KNLASRFASSPGVFSREGGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXVVWNPPTSGDNSSDATEKEAGSRG-TPAAXXXXXXXXXXXXXXXXXTGD---GSGKGSSGVSSSCAKSHPSSSLSVVSSTSTELLSDRAEDSDTTPGSSXXXXXXXXXXXXXVQDKRSASVVVDKSTVAEIYKVSEDTVEVESLLV 2856 MDKV A AE ER+G MLKKFK+VERRSGGLCNPDLLE +VRS+ G G S SSP+A PP S D KG AA L++LVVVDVE D AG G V+S QD PWAEDMLCR VRKRHAA+L+TRGRALAKGLARMLKG VA+RLPPWEE E+ +E++ AEL RI+S N+F +PTH S VS SED ++ PT +S XXXXXXXXXXXXXXXXX XXXXXXX XXXXXXXXXXXXXXXXXXXXXXAD V SRRQDWKL AQELSLI+KEEERVMKPDVL LLAKGA LGCLQQADFWDVFARLEVATRTEALLNIA+RGGRGCAARSGRMGRELCI+LTSVVLEA+N VEQAQR++Q+ S+P + E R RPSSAR+SR S LEA+ GG ARAR+GS + +R+VKGESVAG + FYKEDPGLKDLDRREEEFRKAIYVNRRALATRLMRLTRDAPLCS+VLG F DD+ + + S+ +N +SRFA+SPG + E T SS E+ AG G P A TGD G + S +SHPSSS SV S T+TE LS+ EDSD P S +K+ V VD++ VAEI +VS+++VEVE+LLV Sbjct: 1 MDKVVAAAEKERKGEMLKKFKQVERRSGGLCNPDLLENIVRSTGGEG--SGESSPSAXXXXXXXXXXXXPPRSPDHKGQDAAIRA-LNSLVVVDVEKDERGGVAGVGGSGGGVSSGAQDVPWAEDMLCRSVRKRHAAVLKTRGRALAKGLARMLKGVSNDLKGVASRLPPWEECEDDDEDKPXGGGAELERIRSLGNIFSAPTHEXXXXXXXXXXXXXXXXXXXXXSCVSAVTSEDGNERLSLSSDNAPTAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------XXXXXXXXXXXXXXXXXXXXXXADCVNSRRQDWKLSAQELSLIKKEEERVMKPDVLTTLLAKGASLGCLQQADFWDVFARLEVATRTEALLNIAIRGGRGCAARSGRMGRELCINLTSVVLEALNAVEQAQRKAQLHSTPTTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGKAAETRPRPSSARLSRGSNFGLEAEMDNGGPARARAGSVGMLAVRRVVKGESVAGKSRV---FYKEDPGLKDLDRREEEFRKAIYVNRRALATRLMRLTRDAPLCSRVLGTFVDDTQMASTPTKASKPQTSPRSTGLRTPQRRVAPENESSRFATSPGKTAEE-----------------------------------VDTGVRKSSSVRERGAGRGGDAPGAAAAAVDLL---------TGDVAVGREESSCAADRGSTESHPSSSGSVTS-TNTEPLSEGTEDSDNAPASRSPSRQQRKQQQEGQHEKK---VAVDQAPVAEISQVSDESVEVETLLV 741 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig519.13275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig519.13275.1 >prot_L-elsbetiae_contig519.13275.1 ID=prot_L-elsbetiae_contig519.13275.1|Name=mRNA_L-elsbetiae_contig519.13275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=953bp MMVPVDDDEDDFIVQTVEDTAVAASDTQQDESWRQYGMKKLGGLVFSSRAback to top mRNA from alignment at L-elsbetiae_contig519:16679..30554- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig519.13275.1 ID=mRNA_L-elsbetiae_contig519.13275.1|Name=mRNA_L-elsbetiae_contig519.13275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=13876bp|location=Sequence derived from alignment at L-elsbetiae_contig519:16679..30554- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig519:16679..30554- >mRNA_L-elsbetiae_contig519.13275.1 ID=mRNA_L-elsbetiae_contig519.13275.1|Name=mRNA_L-elsbetiae_contig519.13275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5718bp|location=Sequence derived from alignment at L-elsbetiae_contig519:16679..30554- (Laminarionema elsbetiae ELsaHSoW15)back to top |