mRNA_L-elsbetiae_contig5187.13270.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5187.13270.1
Unique NamemRNA_L-elsbetiae_contig5187.13270.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5187.13270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5187contigL-elsbetiae_contig5187:275..957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size683
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816530.9937117-CDS-L-elsbetiae_contig5187:274..6521622816530.9937117-CDS-L-elsbetiae_contig5187:274..652Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5187 275..652 +
1691683626.872169-CDS-L-elsbetiae_contig5187:274..6521691683626.872169-CDS-L-elsbetiae_contig5187:274..652Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5187 275..652 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816531.0072286-UTR-L-elsbetiae_contig5187:652..9571622816531.0072286-UTR-L-elsbetiae_contig5187:652..957Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5187 653..957 +
1691683626.8820295-UTR-L-elsbetiae_contig5187:652..9571691683626.8820295-UTR-L-elsbetiae_contig5187:652..957Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5187 653..957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5187.13270.1prot_L-elsbetiae_contig5187.13270.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5187 275..652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5187.13270.1

>prot_L-elsbetiae_contig5187.13270.1 ID=prot_L-elsbetiae_contig5187.13270.1|Name=mRNA_L-elsbetiae_contig5187.13270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
RKTQRRTLRPATQRRASDGSVSISFYKKSIVRILKACLLGVGVCLFWTLG
IRRFVCYLASPHGFCHYNEPSPEGDLVCLYIHIEFSLGAGPAGCWSSHLR
ALEPGFSGDFSSWRRTWRRTPILAL*
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mRNA from alignment at L-elsbetiae_contig5187:275..957+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5187.13270.1 ID=mRNA_L-elsbetiae_contig5187.13270.1|Name=mRNA_L-elsbetiae_contig5187.13270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=683bp|location=Sequence derived from alignment at L-elsbetiae_contig5187:275..957+ (Laminarionema elsbetiae ELsaHSoW15)
CGCAAGACGCAAAGACGCACGCTCAGACCTGCTACACAGCGTCGTGCCTC
TGATGGGTCCGTGTCCATCTCTTTCTACAAAAAGTCAATAGTAAGAATAT
TAAAAGCGTGCCTCCTAGGAGTCGGCGTGTGCCTCTTTTGGACGCTGGGT
ATCAGACGCTTTGTTTGTTATCTTGCTTCACCCCATGGATTTTGTCATTA
CAATGAGCCAAGTCCGGAGGGCGATCTTGTCTGCCTATATATACATATTG
AGTTTTCCCTGGGTGCAGGGCCTGCGGGCTGTTGGTCAAGCCACTTAAGG
GCACTGGAACCAGGCTTTTCAGGAGACTTTTCAAGCTGGCGACGCACGTG
GCGACGTACGCCAATTCTGGCTCTTTAGTGCGACGCGGCAACTCGTAGTG
TGCGCAACTCGAACAACCAGCAGTCAACACTAACTACTAATGTTTTCTTG
TTTCACCCCCCGAATTGTTCCGGCCATGAGCAACGTCTGAAAGGGGAAAC
TTGTACCTACTTTCTTATTATAAATCGACCGATTTTGGGTGCGAATGTGA
ATGTTTCCCTTTTCACCTATAAATATACCACCACACACGCACGCACTAAA
AAACCTCCCGAGTAAGGAGTGGCTGTCTGCCTTCGAGGGGGGGCTGTTCG
AGGAGGAGGACGGGGAGGAGAAGGAGGAACGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5187:275..957+

>mRNA_L-elsbetiae_contig5187.13270.1 ID=mRNA_L-elsbetiae_contig5187.13270.1|Name=mRNA_L-elsbetiae_contig5187.13270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig5187:275..957+ (Laminarionema elsbetiae ELsaHSoW15)
CGCAAGACGCAAAGACGCACGCTCAGACCTGCTACACAGCGTCGTGCCTC
TGATGGGTCCGTGTCCATCTCTTTCTACAAAAAGTCAATAGTAAGAATAT
TAAAAGCGTGCCTCCTAGGAGTCGGCGTGTGCCTCTTTTGGACGCTGGGT
ATCAGACGCTTTGTTTGTTATCTTGCTTCACCCCATGGATTTTGTCATTA
CAATGAGCCAAGTCCGGAGGGCGATCTTGTCTGCCTATATATACATATTG
AGTTTTCCCTGGGTGCAGGGCCTGCGGGCTGTTGGTCAAGCCACTTAAGG
GCACTGGAACCAGGCTTTTCAGGAGACTTTTCAAGCTGGCGACGCACGTG
GCGACGTACGCCAATTCTGGCTCTTTAGCGCAAGACGCAAAGACGCACGC
TCAGACCTGCTACACAGCGTCGTGCCTCTGATGGGTCCGTGTCCATCTCT
TTCTACAAAAAGTCAATAGTAAGAATATTAAAAGCGTGCCTCCTAGGAGT
CGGCGTGTGCCTCTTTTGGACGCTGGGTATCAGACGCTTTGTTTGTTATC
TTGCTTCACCCCATGGATTTTGTCATTACAATGAGCCAAGTCCGGAGGGC
GATCTTGTCTGCCTATATATACATATTGAGTTTTCCCTGGGTGCAGGGCC
TGCGGGCTGTTGGTCAAGCCACTTAAGGGCACTGGAACCAGGCTTTTCAG
GAGACTTTTCAAGCTGGCGACGCACGTGGCGACGTACGCCAATTCTGGCT
CTTTAG
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