mRNA_L-elsbetiae_contig5186.13269.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5186.13269.1
Unique NamemRNA_L-elsbetiae_contig5186.13269.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5186.13269.1 vs. uniprot
Match: A0A6H5K1I4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I4_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 1.620e-59
Identity = 115/215 (53.49%), Postives = 131/215 (60.93%), Query Frame = 1 
Query:    1 IDACLLHNLQNPLVGTVHIFVDHPDAVRLPVDGVNT------------------------------SSWVDTDWRPPVLEGLEEKLAGKARVMRLSTNRRMTFGDAIRYSNNILSDRVVLLSNSDIAFDESLARLGDPSTLDMVHKVFALAAWQSKLVSANNGDRPTSVY----YEDQNALHENVAVGEPEFRPRTDSQDTWIFRSPLPSRVADA 543
            ID CLL N+QNPL+GTVHIF DHPDAVR P     T                              +SW +TDWRPPVL GL   LAGK RV+    +RRMTF DA RYSN +L  +VVLLSNSDI FDESLARLGDPSTLDM +KVFALA WQ+        D P + +     ED  A +    +G+ EF PRTDSQD+WIFRSPLP  VADA
Sbjct:  523 IDVCLLRNVQNPLIGTVHIFTDHPDAVRQPRATTGTILESRSSAETSQHGPSLHRHNNERGSHDTDTSWAETDWRPPVLRGLNTTLAGKVRVVSTLNDRRMTFRDAFRYSNVVLDGQVVLLSNSDIMFDESLARLGDPSTLDMANKVFALAVWQNHPREGPGDDYPNTDHGEPNIEDPGATY-GTMIGDLEFTPRTDSQDSWIFRSPLPPAVADA 736
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BLAST of mRNA_L-elsbetiae_contig5186.13269.1 vs. uniprot
Match: D7FUH1_ECTSI (Putative methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH1_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 1.130e-57
Identity = 113/214 (52.80%), Postives = 131/214 (61.21%), Query Frame = 1 
Query:    1 IDACLLHNLQNPLVGTVHIFVDHPDAVRLPVDGV----------------------------NTSSWVDTDWRPPVLEGLEEKLAGKARVMRLSTNRRMTFGDAIRYSNNILSDRVVLLSNSDIAFDESLARLGDPSTLDMVHKVFALAAWQSKLVSANNGDRPTSVYY-----EDQNALHENVAVGEPEFRPRTDSQDTWIFRSPLPSRVADA 543
            ID CLL N+QNP++GTVHIF DHPDAVR P  G                               +S  +TDWRPPVL  L   LAGK RV+     RRMTF DA RYSN++L  +VVLLSNSDI FDESLARLGDPSTLDM +KVFALAAWQ++       D P   +      ED  A++    +G+ EF PRTDSQD+WIFRSPLP  VADA
Sbjct: 1374 IDVCLLRNIQNPIIGTVHIFTDHPDAVRQPTTGTILESPSSAETARHSPSLHRYSNERGSHDTDTSCAETDWRPPVLRRLNATLAGKVRVVSTLNGRRMTFRDAFRYSNDVLDGQVVLLSNSDIMFDESLARLGDPSTLDMANKVFALAAWQNQPSEGPGDDYPNMDHGDPNIDEDPGAMY-GTMIGDLEFTPRTDSQDSWIFRSPLPPAVADA 1586
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BLAST of mRNA_L-elsbetiae_contig5186.13269.1 vs. uniprot
Match: A0A7S2S5F8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5F8_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.340e-16
Identity = 47/127 (37.01%), Postives = 66/127 (51.97%), Query Frame = 1 
Query:  163 KLAGKARVMRLSTNRRMTFGDAIRYSNNILSDRVVLLSNSDIAFDESLARLGDPSTLDMVHKVFALAAWQSKLVSANNGDRPTSVYYEDQNALHENVAVGEPEFRPRTDSQDTWIFRSPLPSRVADA 543
            +L    +V  ++  RR TF D  +YSN  L  +V LL+N+DI FD+ L+R GD ST  +  +  AL  W+       +   P              +A G  EF PR DSQD+W++RSPLP  V +A
Sbjct:  254 QLPNSHKVKVVALGRRATFSDMFQYSNTALPGKVCLLANADIFFDDHLSRFGDTSTTSLEGRALALLRWEWTWTQTGDPGDPGD------------MARGTAEFLPRVDSQDSWLWRSPLPQAVLEA 368
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BLAST of mRNA_L-elsbetiae_contig5186.13269.1 vs. uniprot
Match: A0A7S1UEU8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEU8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 9.610e-13
Identity = 45/134 (33.58%), Postives = 66/134 (49.25%), Query Frame = 1 
Query:  133 RPPVLEGLEEKLAGKARVMRLSTNRRMTFGDAIRYSNNILSDRVVLLSNSDIAFDESLARLGDPSTLDMVHKVFALAAWQSKLVSANNGDRPTSVYYEDQNALHENVAVGEPEFRPRTDSQDTWIFRSPLPSRV 534
            R  V   L+     K +++     +RM+F DA  Y+N+ L  R++ L+N+DI FD+++ RLGD S+L M  +V AL   +       N                    V E  F PR+DSQD WI+RSP+   V
Sbjct:  673 RDEVFSFLDSAPELKQKIVVFHLGKRMSFADAFSYANDALDGRLIALANADIFFDDTIYRLGDASSLQMDRRVLALLRHELHQTKETN--------------------VFETRFYPRSDSQDAWIYRSPVAQSV 786
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BLAST of mRNA_L-elsbetiae_contig5186.13269.1 vs. uniprot
Match: A0A7S3UR45_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UR45_HETAK)

HSP 1 Score: 70.9 bits (172), Expect = 4.100e-11
Identity = 51/181 (28.18%), Postives = 81/181 (44.75%), Query Frame = 1 
Query:    4 DACLLHNLQNPLVGTVHIFVDHPDAVRLPVDGVNTSSWVDTDWRPPVLEGLEEKLAGKARVMRLSTNRRMTFGDAIRYSNNILSDRVVLLSNSDIAFDESL--ARLGDPSTLDMVHKVFALAAWQSKLVSANNGDRPTSVYYEDQNALHENVAVGEPEFRPRTDSQDTWIFRSPLPSRVAD 540
            D  L  NL N  +  +H+FV+ P  +++                               ++ ++    ++TF  A+ YSN  L +++ ++SNSDI FDE+L  A L     LD  H++ AL +W       +N  +  +        L E+V+     F PR DSQD WIFRSP+  +  D
Sbjct:  117 DFALQRNLMNGHIHRIHLFVEEPQNLKM--------------------------FLNHHKIHQVLVTEKLTFRMALEYSNRYLQNKLCIVSNSDIFFDETLRYALLLQKMELDNDHQLLALTSW-----CHSNSSKDVAGA-----GLAEDVSAAA-AFHPRVDSQDAWIFRSPVTQQERD 260
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BLAST of mRNA_L-elsbetiae_contig5186.13269.1 vs. uniprot
Match: A0A6C0KWG0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KWG0_9ZZZZ)

HSP 1 Score: 58.9 bits (141), Expect = 3.230e-7
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 1 
Query:  184 VMRLSTNRRMTFGDAIRYSNNI--LSDRVVLLSNSDIAFDESLARLGDPSTLDMVHKVFALAAWQSKLVSANNGDRPTSVYYEDQNALHENVAVGEPEFRPRTDSQDTWIFRSPL 522
            ++  S + ++ F DAI + NN     ++  +LSNSDI FDESL  + D +T+   + VFAL  +       NN D  TS+Y +D               +PRTDSQD WIF+SPL
Sbjct:   75 IVNSSQSYKLRFDDAINFINNYEGCKNKYCILSNSDIYFDESLKNI-DNTTI--TNNVFALLRYD------NNSDI-TSLYSKDG--------------KPRTDSQDCWIFKSPL 165
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BLAST of mRNA_L-elsbetiae_contig5186.13269.1 vs. uniprot
Match: A0A7S1KWH2_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1KWH2_ALECA)

HSP 1 Score: 54.7 bits (130), Expect = 1.480e-5
Identity = 47/177 (26.55%), Postives = 74/177 (41.81%), Query Frame = 1 
Query:    7 ACLLHNLQNPLVGTVHIFVDHPDAVRLPVDGVNTSSWVDTDWRPPVLEGLEEKLA---GKARVMRLSTNRRMTFGDAIRYSNNILSDRVVLLSNSDIAFDESLARLGDPSTLDMVHKVFALAA-WQSKLVSANNGDRPTSVYYEDQNALHENVAVGEPEFRPRTDSQDTWIFRSPLP 525
              LL N  NP +  VH+ ++              S   D     P +      +A     A++  +   R+ T+ D  RY+N+ L+ R VLL+N+D+ FDE+LA L  P   D+ H +      +  +       + P+ V            A+G  +     DS D + FRSPLP
Sbjct:   31 TALLVNTANPFIEAVHVLLE--------------SGGEDACRGLPAMLTKHAAVAPHRDMAKITCVPVGRQPTYADFFRYANSALAQRDVLLANTDVVFDETLALLERPVRTDLAHVLSVQPPPYAGRYKELLGKECPSEV----------RCAMGGYDGFAPVDSWDAYAFRSPLP 183
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5186.13269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K1I4_9PHAE1.620e-5953.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUH1_ECTSI1.130e-5752.80Putative methyltransferase n=1 Tax=Ectocarpus sili... [more]
A0A7S2S5F8_9STRA4.340e-1637.01Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1UEU8_9STRA9.610e-1333.58Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3UR45_HETAK4.100e-1128.18Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6C0KWG0_9ZZZZ3.230e-738.26Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A7S1KWH2_ALECA1.480e-526.55Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5186contigL-elsbetiae_contig5186:7820..9652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.5
Seed ortholog evalue1.3e-51
Seed eggNOG ortholog2880.D7FUH1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size549
Cds size546
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5186.13269.1prot_L-elsbetiae_contig5186.13269.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5186 7820..9651 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816530.849869-CDS-L-elsbetiae_contig5186:7819..79911622816530.849869-CDS-L-elsbetiae_contig5186:7819..7991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5186 7820..7991 +
1691683626.7966003-CDS-L-elsbetiae_contig5186:7819..79911691683626.7966003-CDS-L-elsbetiae_contig5186:7819..7991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5186 7820..7991 +
1622816530.8608842-CDS-L-elsbetiae_contig5186:8791..88801622816530.8608842-CDS-L-elsbetiae_contig5186:8791..8880Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5186 8792..8880 +
1691683626.807318-CDS-L-elsbetiae_contig5186:8791..88801691683626.807318-CDS-L-elsbetiae_contig5186:8791..8880Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5186 8792..8880 +
1622816530.871442-CDS-L-elsbetiae_contig5186:9187..92741622816530.871442-CDS-L-elsbetiae_contig5186:9187..9274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5186 9188..9274 +
1691683626.8158717-CDS-L-elsbetiae_contig5186:9187..92741691683626.8158717-CDS-L-elsbetiae_contig5186:9187..9274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5186 9188..9274 +
1622816530.8843415-CDS-L-elsbetiae_contig5186:9453..96511622816530.8843415-CDS-L-elsbetiae_contig5186:9453..9651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5186 9454..9651 +
1691683626.8244295-CDS-L-elsbetiae_contig5186:9453..96511691683626.8244295-CDS-L-elsbetiae_contig5186:9453..9651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5186 9454..9651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5186.13269.1

>prot_L-elsbetiae_contig5186.13269.1 ID=prot_L-elsbetiae_contig5186.13269.1|Name=mRNA_L-elsbetiae_contig5186.13269.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
IDACLLHNLQNPLVGTVHIFVDHPDAVRLPVDGVNTSSWVDTDWRPPVLE
GLEEKLAGKARVMRLSTNRRMTFGDAIRYSNNILSDRVVLLSNSDIAFDE
SLARLGDPSTLDMVHKVFALAAWQSKLVSANNGDRPTSVYYEDQNALHEN
VAVGEPEFRPRTDSQDTWIFRSPLPSRVADAT
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mRNA from alignment at L-elsbetiae_contig5186:7820..9652+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5186.13269.1 ID=mRNA_L-elsbetiae_contig5186.13269.1|Name=mRNA_L-elsbetiae_contig5186.13269.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1833bp|location=Sequence derived from alignment at L-elsbetiae_contig5186:7820..9652+ (Laminarionema elsbetiae ELsaHSoW15)
ATTGACGCGTGTTTGCTGCACAACCTTCAAAACCCATTGGTGGGGACGGT
GCATATCTTCGTTGACCACCCTGACGCGGTACGACTGCCTGTCGACGGCG
TCAACACATCGTCCTGGGTTGACACCGATTGGAGGCCGCCAGTTTTGGAA
GGCCTCGAGGAGAAACTGGCTGGTGAGAACTGCGTAGTGAGTATAAAGGC
TTAGACCGGTTTTTGTAGGGGTACAAAGTTTATTTTTAGAAAAGTTGCTT
TCTTCGTGTCATTTGGCACTTTTCATCGCCAAGAGCTCGGAAACGTGCCT
GCGCAGCAGAAGAACAATTGAAGCTCTTGTCCAGAGGTTTCTAGATCTCC
TGCCCATTCTGGCAGACTTCACGTTTGGTTTTTCGTCAAGGAGCAAGATG
GCAACATTGTGCCAACGTTGCAACAAAATAGCTTGTTCGTGCAAAAGTTT
ACAACATATTTGCCCGATAATTCTTTTCAGCCGAAAAGTTGTCAAGATGG
TTCCTTTCTTGCTCCTCGACGAAAAGCAAACTTGAAGTCTGCCAGAATGG
GCAGGAAATCTAGAAACCTCTGGAGGAGAGCTGCAATTGTTCTTATGTGC
GCAGACACGATTCCGAACTTTTGGCGATGAAAAGTGCCCAACAATACAAA
AAAAAAACTTTTCTCAAAATGAACTTTGCGCTCCCATAAAAACCGGTGTT
AAAGGGCGTCAAACTACTTGGCATTGCACAGATGAAACAAGCCGCTTGGA
ACTACAACCTTAACGCTGATGAGTAGAGACTGAGAGCCGAAACGAAAGCG
ACTATGCCAAAGACGCGAGCATGCCCCCGAGGATTGACTCTCCTTGGCAT
TGTTTTTCTGTTGACGTTTTCTTGCGTCGACGCGGAGACAAAGCGAATCG
CAGGGACTTACTCTCGTGTGGGTTCTCAAGGGAAAAACTTTGTATGCTTG
TTGCGTTGTTTTCAACTTCCAGGTAAGGCGAGGGTGATGAGGTTATCGAC
AAACCGCAGGATGACGTTCGGAGATGCCATACGCTACTCCAACAACATCC
TGAGCGACAGGGTGAGCCGAAACAAAAGTCTAAGAAACAGCACAGAACAC
CAGGGGAAAACGTTCCAGACGTGAAGAATTGCTCTCTTTCCGCGCTTTAA
AAAGGGCAGGTTTGCTTCGAAAAGTGGGCTCAAAAAGTGCGTCTACGTTA
TTTTACGCTACATGTAATATATTTGCGCTGTACGCAAGAATGCAAAGCGT
GTCCGCTAAAAGCAAGCCCTGTTCGAAGGTTATTGTATGCACATAATTTT
TTTATCTCTAACCTCATTGTCGTTGTCCAATAGTCGAACCTCCTGACGCT
TGTTTCCTGTACTATCAGGTGGTGTTGCTGTCAAACTCGGACATAGCATT
CGATGAATCGCTGGCGAGACTGGGGGACCCATCTACTCTCGACATGGTCC
ACAAGGTAAGGGCTGAAAGAAACCCCGAGTACCTACATAGATATAGTTTT
AGCAAGACTCAGAAGGATGTGAATACCTTGGTGCTACAGTAGCCTGGTAT
CTCAACGCGTACGAAGCCATCTCTTGAGCCACCTCTATCGATGCCAATGT
GGTTTGCGGTCTACTTGCACTTACTTCCGTGCAGGTGTTCGCCTTGGCTG
CGTGGCAAAGCAAGCTCGTCTCGGCTAACAACGGTGATCGTCCCACTAGT
GTCTACTACGAAGACCAAAACGCACTCCACGAAAATGTTGCGGTCGGAGA
GCCCGAGTTTCGGCCAAGAACAGACAGCCAAGACACCTGGATCTTCCGAT
CCCCGCTGCCCTCGAGAGTCGCAGACGCCACCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5186:7820..9652+

>mRNA_L-elsbetiae_contig5186.13269.1 ID=mRNA_L-elsbetiae_contig5186.13269.1|Name=mRNA_L-elsbetiae_contig5186.13269.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1092bp|location=Sequence derived from alignment at L-elsbetiae_contig5186:7820..9652+ (Laminarionema elsbetiae ELsaHSoW15)
ATTGACGCGTGTTTGCTGCACAACCTTCAAAACCCATTGGTGGGGACGGT
GCATATCTTCGTTGACCACCCTGACGCGGTACGACTGCCTGTCGACGGCG
TCAACACATCGTCCTGGGTTGACACCGATTGGAGGCCGCCAGTTTTGGAA
GGCCTCGAGGAGAAACTGGCTGATTGACGCGTGTTTGCTGCACAACCTTC
AAAACCCATTGGTGGGGACGGTGCATATCTTCGTTGACCACCCTGACGCG
GTACGACTGCCTGTCGACGGCGTCAACACATCGTCCTGGGTTGACACCGA
TTGGAGGCCGCCAGTTTTGGAAGGCCTCGAGGAGAAACTGGCTGGTAAGG
CGAGGGTGATGAGGTTATCGACAAACCGCAGGATGACGTTCGGAGATGCC
ATACGCTACTCCAACAACATCCTGAGCGACAGGGTAAGGCGAGGGTGATG
AGGTTATCGACAAACCGCAGGATGACGTTCGGAGATGCCATACGCTACTC
CAACAACATCCTGAGCGACAGGGTGGTGTTGCTGTCAAACTCGGACATAG
CATTCGATGAATCGCTGGCGAGACTGGGGGACCCATCTACTCTCGACATG
GTCCACAAGGTGGTGTTGCTGTCAAACTCGGACATAGCATTCGATGAATC
GCTGGCGAGACTGGGGGACCCATCTACTCTCGACATGGTCCACAAGGTGT
TCGCCTTGGCTGCGTGGCAAAGCAAGCTCGTCTCGGCTAACAACGGTGAT
CGTCCCACTAGTGTCTACTACGAAGACCAAAACGCACTCCACGAAAATGT
TGCGGTCGGAGAGCCCGAGTTTCGGCCAAGAACAGACAGCCAAGACACCT
GGATCTTCCGATCCCCGCTGCCCTCGAGAGTCGCAGACGCCACCGTGTTC
GCCTTGGCTGCGTGGCAAAGCAAGCTCGTCTCGGCTAACAACGGTGATCG
TCCCACTAGTGTCTACTACGAAGACCAAAACGCACTCCACGAAAATGTTG
CGGTCGGAGAGCCCGAGTTTCGGCCAAGAACAGACAGCCAAGACACCTGG
ATCTTCCGATCCCCGCTGCCCTCGAGAGTCGCAGACGCCACC
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