mRNA_L-elsbetiae_contig5183.13266.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5183.13266.1
Unique NamemRNA_L-elsbetiae_contig5183.13266.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5183.13266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5183contigL-elsbetiae_contig5183:2239..2675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size439
Cds size363
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816530.720619-UTR-L-elsbetiae_contig5183:2238..23121622816530.720619-UTR-L-elsbetiae_contig5183:2238..2312Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5183 2239..2312 +
1691683626.7332225-UTR-L-elsbetiae_contig5183:2238..23121691683626.7332225-UTR-L-elsbetiae_contig5183:2238..2312Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5183 2239..2312 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816530.7312996-CDS-L-elsbetiae_contig5183:2312..26751622816530.7312996-CDS-L-elsbetiae_contig5183:2312..2675Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5183 2313..2675 +
1691683626.7441661-CDS-L-elsbetiae_contig5183:2312..26751691683626.7441661-CDS-L-elsbetiae_contig5183:2312..2675Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5183 2313..2675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5183.13266.1prot_L-elsbetiae_contig5183.13266.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5183 2313..2675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5183.13266.1

>prot_L-elsbetiae_contig5183.13266.1 ID=prot_L-elsbetiae_contig5183.13266.1|Name=mRNA_L-elsbetiae_contig5183.13266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MADWRARRKALRGNESRIVELASRWSTSIEPIDRHNGNESRKLFLDACLS
HLKKSTALSNEERSMWETVGDVDFLRLKARHTFDLLGSELTADEWAKLLV
VPLEQAAATRDKGLATQLVKA
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mRNA from alignment at L-elsbetiae_contig5183:2239..2675+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5183.13266.1 ID=mRNA_L-elsbetiae_contig5183.13266.1|Name=mRNA_L-elsbetiae_contig5183.13266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=437bp|location=Sequence derived from alignment at L-elsbetiae_contig5183:2239..2675+ (Laminarionema elsbetiae ELsaHSoW15)
CAGAAGCACGCAGCTGGAGTCCTCCAAGAATAACCGACTGGTGAGGCCAA
CGCGAAGCACTGCGAGGCCCAAGGATGGCCGACTGGCGAGCTAGGCGCAA
AGCACTGCGAGGAAACGAGAGCCGCATAGTGGAACTCGCGTCACGTTGGA
GCACCTCAATTGAGCCCATCGACAGGCACAACGGCAACGAGAGCAGAAAA
CTGTTTCTGGACGCGTGTCTGAGCCACCTGAAGAAATCAACCGCTTTGTC
AAATGAAGAAAGGTCGATGTGGGAGACGGTCGGTGACGTAGACTTCCTTC
GCCTAAAAGCCAGGCATACTTTCGACCTCCTCGGCTCCGAGCTGACAGCC
GACGAGTGGGCGAAGCTGCTAGTGGTTCCGCTCGAGCAGGCCGCCGCAAC
GAGAGACAAGGGACTTGCAACGCAGCTGGTGAAGGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5183:2239..2675+

>mRNA_L-elsbetiae_contig5183.13266.1 ID=mRNA_L-elsbetiae_contig5183.13266.1|Name=mRNA_L-elsbetiae_contig5183.13266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig5183:2239..2675+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGACTGGCGAGCTAGGCGCAAAGCACTGCGAGGAAACGAGAGCCG
CATAGTGGAACTCGCGTCACGTTGGAGCACCTCAATTGAGCCCATCGACA
GGCACAACGGCAACGAGAGCAGAAAACTGTTTCTGGACGCGTGTCTGAGC
CACCTGAAGAAATCAACCGCTTTGTCAAATGAAGAAAGGTCGATGTGGGA
GACGGTCGGTGACGTAGACTTCCTTCGCCTAAAAGCCAGGCATACTTTCG
ACCTCCTCGGCTCCGAGCTGACAGCCGACGAGTGGGCGAAGCTGCTAGTG
GTTCCGCTCGAGCAGGCCGCCGCAACGAGAGACAAGGGACTTGCAACGCA
GCTGGTGAAGGCAATGGCCGACTGGCGAGCTAGGCGCAAAGCACTGCGAG
GAAACGAGAGCCGCATAGTGGAACTCGCGTCACGTTGGAGCACCTCAATT
GAGCCCATCGACAGGCACAACGGCAACGAGAGCAGAAAACTGTTTCTGGA
CGCGTGTCTGAGCCACCTGAAGAAATCAACCGCTTTGTCAAATGAAGAAA
GGTCGATGTGGGAGACGGTCGGTGACGTAGACTTCCTTCGCCTAAAAGCC
AGGCATACTTTCGACCTCCTCGGCTCCGAGCTGACAGCCGACGAGTGGGC
GAAGCTGCTAGTGGTTCCGCTCGAGCAGGCCGCCGCAACGAGAGACAAGG
GACTTGCAACGCAGCTGGTGAAGGCA
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