mRNA_L-elsbetiae_contig5180.13265.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5180.13265.1
Unique NamemRNA_L-elsbetiae_contig5180.13265.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5180.13265.1 vs. uniprot
Match: D7FP03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP03_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 2.510e-27
Identity = 55/64 (85.94%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 MRECEEQHQYPRSAALAVFHGDLRAAVKALRRAHDVTSKELQAASLVIAMMPPARPAAAASHAQ 192
            MRECEEQ QYPRSAALAVFHGDLRAAV ALRRAHDVT++ELQAAS V A+MPPA PAAAASH Q
Sbjct:    1 MRECEEQRQYPRSAALAVFHGDLRAAVSALRRAHDVTNRELQAASDVAALMPPAGPAAAASHTQ 64
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5180.13265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP03_ECTSI2.510e-2785.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5180contigL-elsbetiae_contig5180:8520..11526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_003120.1
Exons2
Model size192
Cds size192
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816530.670135-CDS-L-elsbetiae_contig5180:8519..86031622816530.670135-CDS-L-elsbetiae_contig5180:8519..8603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5180 8520..8603 +
1691683626.7124908-CDS-L-elsbetiae_contig5180:8519..86031691683626.7124908-CDS-L-elsbetiae_contig5180:8519..8603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5180 8520..8603 +
1622816530.6843348-CDS-L-elsbetiae_contig5180:11418..115261622816530.6843348-CDS-L-elsbetiae_contig5180:11418..11526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5180 11419..11526 +
1691683626.724834-CDS-L-elsbetiae_contig5180:11418..115261691683626.724834-CDS-L-elsbetiae_contig5180:11418..11526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5180 11419..11526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5180.13265.1prot_L-elsbetiae_contig5180.13265.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5180 8520..11526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5180.13265.1

>prot_L-elsbetiae_contig5180.13265.1 ID=prot_L-elsbetiae_contig5180.13265.1|Name=mRNA_L-elsbetiae_contig5180.13265.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=64bp
MRECEEQHQYPRSAALAVFHGDLRAAVKALRRAHDVTSKELQAASLVIAM
MPPARPAAAASHAQ
back to top

mRNA from alignment at L-elsbetiae_contig5180:8520..11526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5180.13265.1 ID=mRNA_L-elsbetiae_contig5180.13265.1|Name=mRNA_L-elsbetiae_contig5180.13265.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3007bp|location=Sequence derived from alignment at L-elsbetiae_contig5180:8520..11526+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCGAGTGCGAAGAGCAGCACCAGTACCCCAGGTCTGCGGCGCTGGC
CGTCTTCCACGGTGACCTCAGGGCAGCCGTCAAGGTGCGCATATATGTAT
GTACATAGACTATTTGAATTGGCGAAAATTCTGAGCGTCGCTCGCTGTCA
TCGCTGTGGTGGCTGCGTTTGGTTCTCTGTCTAGAATTCTGAAAACTGCG
GTCTCCATCCTTCATCCGCTTTCTCTCTCTTTCTCTCCCGAGGTGCCCCT
CGCGTGTGGCTGCTTGCAGTGCACTTCACAGTGCATTCGAGCATTCGCTT
CTCTCTCTTCCCCCTCTCCCTTATCTGTCAGTGTCTTTTCCTCTCTCTGT
TTGTCTCTCTTTTTCTCGGCGCATTTCGTCTGAAAGGGCTCTTATTTCCG
CCCGGAAACTCACCGTGTTGCTACCCCGAGGTGTCCCTCGCGTGCGTCTG
TGCATTGTTGCTACTCGTGTATCCCCCTATGCTACTCGCGCTTGCTTCCC
CTACTGTGGTTTAAACCTTTCTCTCTTATATGAGCGATGGACTCTCTGCC
AAGCTATGTATATAACTGCTTATCTTTATAGCCTATCTATATCTCTACTC
TACCAAACATATTTGTTTTTGAAATTTGGCTCTCGCTTGAAACTCTGCTT
TTATTCGCCGAAATAGTGAACGCGCCGAAGGGGTCAATTGTGCGAGCCGA
CTGCTAAGTAGGTGGCATGTGTAGAGGTGTAGCTATGGGTACCCTGCGAG
GCACTCCATGTATGCGTATTGTTGAGCCCGCGGGCACACTCGCAGCAGCG
CCGTCAAATACAACGAGGAAGGCAGTTATCTTGCACATCCTTCATTTCAC
TCTATATGTTTTGCTCCCGCTGATGTGCTTTTGTCTGAAAGGGGCTTTTA
GTTCCGCCCGGAAACTCTCCGCATGGCAACCCCGAGGTGTCCCTCGCGTG
CGTCTGTGCATTGCTATACTCGCGCTTCCCCCTATGCTACTCGCGCTTGC
TTCCCCTACTGTGGTTTAAACCTTTCTCTCTTATAAGAGCGATGGACTCT
TGTCAAGCTATGCATCTAACTGTACTTATCTACGTACGTCTATCTCTACC
AAACATATATTTTTTGGAAATTTGGCTCTCGCTTGAAACTCCGCTTTTAT
TCGCCGAAATGGTGAACGCGCCGAAGGAGTCGATTGTGCGAGCCGACTGC
TGTGAAGATGCATGTGTAGCTATGGGTACCCTGCGAGTCACTCTATGTAT
GCGTATTGTTGAGCCCGCGGGTACACTCGCAGCAGCGCCGTCAAACACAA
GAAGGAGAGCAGTTATCTTGCACATCCTTCATGTCGCTCTATGTTGTCCT
CCTGCTGACGTGCTTTTCGGAAGTGTATGTAAGTATATCTAGATCTTAAA
TATCTATTACCATAAGATGTTCAAAAAACGACTGCTGCTTGTGTTTTCCA
ATTACACTCTTATCTACAATACCTTGGATGCGCTTACAATACAAGCGGGG
GCGCGTGCGAGCGCCCAAAACCTTGTACGTTATCGTAATCGCGTTCTTTC
GGTGGTGTTTCGTTGTCTTCTCTCTGTCTCTGTTTCTGTGTCTGTCTGTC
TGTCTGTATTCTCTCCCTGTGGGTTGTGATTTGATTATGTTGTCTCGGAG
GCCGGACTGACACTCTCCGTTTATGTTTTCTTCTCCGTGGTGTAGTTTCT
ACGTGTTTTGCTCCTGCTCATCTGTTGCTTGGTAGGCGGCCGCTTTCAGA
CGTGCTTGGTTATATGCACCCGCAAGGCTGCAATTTTCACCCATTTGGTT
TAATTACCGTAGGTGACACAAGATACCACACCCCCTGGACAGATTTTCAA
AGCTCGATTCCCCCCCAGCAAGCAGAGTGACAGTGCCGAAATGGGTGGCG
TTGGAAAGATCTAGTCGAGCGCTGTCCGAAATTATGGCGTTTGGTGCTGG
CACCTTCTTCGTTACGGAGTTATCGAGCTCTAAAATTATGTCCAGGGGGT
GTGGTATCTTATGTCACCTACGGTAAGCCAATCACGCTGTTCTTCGTCGC
GAGGGATCGAGACCAAAAACCTTGGTCACAAATATTCGTATTATTGTTCC
ACGTTTAGTTTGTTTTTTCTTAAACGCAAGCGCGTTGTTGCGGTTCCATA
GCACCAAAGAAGAACCGCCACCACTTGAAACGGGATCGGATTGAGTTAAA
TCACGGGGATATTTTTGGTCTCTATTAACCCTCTTCTTTGTCTTTGTTCA
CATTTTTTTCCAGTGCTCGACGGAATACTTGCCATGAGGGCGTCTTGCCT
CAGAGTACTGAGCCGTGGTCACATAGAAGGGCTTCCTTTCCCGGAAGCTC
CCACTCTCATCTTCTGCGGTCCTTGCGTAGTAATTTTATCGTGGCAAGGG
TCCAGCCTTTACCGATATGTAGCCTATTAACCTCAAGGGCCATCCGCAGA
CGAGGAGGGTTGGAAATGGTCACCGCTCAGGCCCCGAATGTCTGGCCTGG
CAGAGCTTTGGAAGGGAACGTGCCGAAAATCTCTTCTAGTGTTGGGTGCT
CTTCTGCACACGCGACCCGTGTTCTGCAGATCACTAAGTAACTGTATTTT
ATGAAGCCCGCATTTATTCGTCACAGATTCCTGTCTCCCGTGGGGAGGTT
TTCGTTCCCATTTGACATGTCTGATTTCAAAGTCAACGCCTGCGTGCGGT
CAGTGTCTTCTTGTCTCCCCGACCACTTTCTCGGCGAGCCCAGCATTGTG
TGTGTGTGTGTGTATGTATGTGTGTGTGTGCGTGCGTGCGTGCGTGTGGC
TATATGTTGGTGTGGTCCCTCGCAGGCCAATTAGCATGGTCATGATGTCA
CGAACAAGGAGCATGACGTCACCATGCGCGTGTGTGTGGTCCCTGGCAGG
CTCTTCGGCGTGCTCACGACGTCACGAGCAAGGAGCTGCAGGCGGCGTCT
CTCGTGATAGCCATGATGCCGCCCGCCAGGCCTGCCGCCGCTGCCTCCCA
TGCTCAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5180:8520..11526+

>mRNA_L-elsbetiae_contig5180.13265.1 ID=mRNA_L-elsbetiae_contig5180.13265.1|Name=mRNA_L-elsbetiae_contig5180.13265.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig5180:8520..11526+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCGAGTGCGAAGAGCAGCACCAGTACCCCAGGTCTGCGGCGCTGGC
CGTCTTCCACGGTGACCTCAGGGCAGCCGTCAAGATGCGCGAGTGCGAAG
AGCAGCACCAGTACCCCAGGTCTGCGGCGCTGGCCGTCTTCCACGGTGAC
CTCAGGGCAGCCGTCAAGGCTCTTCGGCGTGCTCACGACGTCACGAGCAA
GGAGCTGCAGGCGGCGTCTCTCGTGATAGCCATGATGCCGCCCGCCAGGC
CTGCCGCCGCTGCCTCCCATGCTCAGGCTCTTCGGCGTGCTCACGACGTC
ACGAGCAAGGAGCTGCAGGCGGCGTCTCTCGTGATAGCCATGATGCCGCC
CGCCAGGCCTGCCGCCGCTGCCTCCCATGCTCAG
back to top