mRNA_L-elsbetiae_contig518.13262.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig518.13262.1
Unique NamemRNA_L-elsbetiae_contig518.13262.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig518.13262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig518contigL-elsbetiae_contig518:2400..2683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size284
Cds size270
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816530.3089674-UTR-L-elsbetiae_contig518:2399..24131622816530.3089674-UTR-L-elsbetiae_contig518:2399..2413Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig518 2400..2413 +
1691683626.4081697-UTR-L-elsbetiae_contig518:2399..24131691683626.4081697-UTR-L-elsbetiae_contig518:2399..2413Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig518 2400..2413 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816530.322033-CDS-L-elsbetiae_contig518:2413..26831622816530.322033-CDS-L-elsbetiae_contig518:2413..2683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig518 2414..2683 +
1691683626.4174821-CDS-L-elsbetiae_contig518:2413..26831691683626.4174821-CDS-L-elsbetiae_contig518:2413..2683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig518 2414..2683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig518.13262.1prot_L-elsbetiae_contig518.13262.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig518 2414..2683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig518.13262.1

>prot_L-elsbetiae_contig518.13262.1 ID=prot_L-elsbetiae_contig518.13262.1|Name=mRNA_L-elsbetiae_contig518.13262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
MSVGMFAVFPVVALIFDIVGRVEVGIKLAAWGHVFLAVGLGSVFWVCGNS
LQRAIDESLKDHSVRKNPASGAATTTDGGGTDTLMAVRKK
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mRNA from alignment at L-elsbetiae_contig518:2400..2683+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig518.13262.1 ID=mRNA_L-elsbetiae_contig518.13262.1|Name=mRNA_L-elsbetiae_contig518.13262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=284bp|location=Sequence derived from alignment at L-elsbetiae_contig518:2400..2683+ (Laminarionema elsbetiae ELsaHSoW15)
CGGTCGGGAAATATATGTCGGTGGGGATGTTTGCGGTTTTCCCGGTCGTT
GCCTTGATCTTCGACATCGTTGGCCGTGTCGAGGTGGGCATTAAGCTGGC
TGCGTGGGGGCACGTATTCTTAGCCGTAGGACTGGGGAGCGTGTTTTGGG
TATGCGGCAACTCCCTGCAAAGGGCAATCGACGAATCTCTAAAGGATCAC
TCGGTAAGGAAGAATCCAGCATCAGGGGCAGCAACGACAACGGATGGGGG
AGGTACAGACACCCTGATGGCGGTGAGGAAAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig518:2400..2683+

>mRNA_L-elsbetiae_contig518.13262.1 ID=mRNA_L-elsbetiae_contig518.13262.1|Name=mRNA_L-elsbetiae_contig518.13262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig518:2400..2683+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGTGGGGATGTTTGCGGTTTTCCCGGTCGTTGCCTTGATCTTCGA
CATCGTTGGCCGTGTCGAGGTGGGCATTAAGCTGGCTGCGTGGGGGCACG
TATTCTTAGCCGTAGGACTGGGGAGCGTGTTTTGGGTATGCGGCAACTCC
CTGCAAAGGGCAATCGACGAATCTCTAAAGGATCACTCGGTAAGGAAGAA
TCCAGCATCAGGGGCAGCAACGACAACGGATGGGGGAGGTACAGACACCC
TGATGGCGGTGAGGAAAAAGATGTCGGTGGGGATGTTTGCGGTTTTCCCG
GTCGTTGCCTTGATCTTCGACATCGTTGGCCGTGTCGAGGTGGGCATTAA
GCTGGCTGCGTGGGGGCACGTATTCTTAGCCGTAGGACTGGGGAGCGTGT
TTTGGGTATGCGGCAACTCCCTGCAAAGGGCAATCGACGAATCTCTAAAG
GATCACTCGGTAAGGAAGAATCCAGCATCAGGGGCAGCAACGACAACGGA
TGGGGGAGGTACAGACACCCTGATGGCGGTGAGGAAAAAG
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