mRNA_L-elsbetiae_contig5179.13260.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5179.13260.1
Unique NamemRNA_L-elsbetiae_contig5179.13260.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5179.13260.1 vs. uniprot
Match: A0A6H5L6M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M7_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.330e-30
Identity = 69/137 (50.36%), Postives = 83/137 (60.58%), Query Frame = 2 
Query:   11 LLALQITRNTRRIYEWQDLREQLAVVHTVMIALGEPPAKVKIIVDAVARGKRLTHAAGVT-----GKMILDMFTNLLPRAHGVANELFSADVARIRKENGG------GMGQGFVVGGLSVPYAT-------RPPGPM 367
            L  LQ+TRN   +Y W +LR  L V H +M A+GEP  K+K+I DAVARG RL  A G T     G  +L+MFTNLLP AHGVAN+LF+ADVARIRK  GG      G+  G + GG  +P          RPP PM
Sbjct:  109 LTVLQVTRNIGGVYTWDNLRNALVVTHQIMTAVGEPATKIKVIADAVARGDRLVSAIGRTAGAAAGVHVLEMFTNLLPNAHGVANDLFAADVARIRKSLGGVHISSTGVAMGGLGGGNPIPPGRLAGRPGRRPPRPM 245
[Close]
BLAST of mRNA_L-elsbetiae_contig5179.13260.1 vs. uniprot
Match: A0A6H5L336_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L336_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.700e-10
Identity = 46/103 (44.66%), Postives = 55/103 (53.40%), Query Frame = 2 
Query:  104 ALGEPPAK------VKIIVDAVARGKRLTHAAGVT-----GKMILDMFTNLLPRAHGVANELFSADVARIRKENGGGMGQGFVVG---GLSV---PYATRPPG 361
            A G PP        +KII D +ARG  L  A G T        +LDMFT LLP AHGV+N+LFSAD  RIRK++    G    +G   GL V   P+ T  PG
Sbjct:  217 AEGRPPGSSAXAGDIKIISDTIARGDHLVIALGPTHGARAATDVLDMFTGLLPNAHGVSNDLFSADYVRIRKKSAPVAGMNAAMGTALGLPVVPAPFPTFGPG 319
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5179.13260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6M7_9PHAE1.330e-3050.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L336_9PHAE4.700e-1044.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5179contigL-elsbetiae_contig5179:3061..3438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816530.2210448-CDS-L-elsbetiae_contig5179:3060..34381622816530.2210448-CDS-L-elsbetiae_contig5179:3060..3438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5179 3061..3438 +
1691683626.3748672-CDS-L-elsbetiae_contig5179:3060..34381691683626.3748672-CDS-L-elsbetiae_contig5179:3060..3438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5179 3061..3438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5179.13260.1prot_L-elsbetiae_contig5179.13260.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5179 3061..3438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5179.13260.1

>prot_L-elsbetiae_contig5179.13260.1 ID=prot_L-elsbetiae_contig5179.13260.1|Name=mRNA_L-elsbetiae_contig5179.13260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
GRVPTGPTDHPKHPEDLRVAGFARAARCRPHGDDCAGRAPGQSEDHRGRG
GPGEAPHARRGRDREDDPRHVHESAPPGARRRQRALLRRRSANPQGERRR
DGTRLRRRGTLRPLCDQAARPHGLPD
back to top

mRNA from alignment at L-elsbetiae_contig5179:3061..3438+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5179.13260.1 ID=mRNA_L-elsbetiae_contig5179.13260.1|Name=mRNA_L-elsbetiae_contig5179.13260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=378bp|location=Sequence derived from alignment at L-elsbetiae_contig5179:3061..3438+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAGAGTGCCTACTGGCCCTACAGATCACCCGAAACACCCGGAGGATCT
ACGAGTGGCAGGATTTGCGCGAGCAGCTCGCTGTCGTCCACACGGTGATG
ATTGCGCTGGGCGAGCCCCCGGCCAAAGTGAAGATCATCGTGGACGCGGT
GGCCCGGGGGAAGCGCCTCACGCACGCCGCGGGCGTGACCGGGAAGATGA
TCCTCGACATGTTCACGAATCTGCTCCCCCGGGCGCACGGCGTCGCCAAC
GAGCTCTTCTCCGCCGACGTAGCGCGAATCCGCAAGGAGAACGGCGGCGG
GATGGGACAAGGCTTCGTCGTCGGGGGACTCTCCGTCCCCTATGCGACCA
GGCCGCCCGGCCCCATGGGCTTCCCGAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5179:3061..3438+

>mRNA_L-elsbetiae_contig5179.13260.1 ID=mRNA_L-elsbetiae_contig5179.13260.1|Name=mRNA_L-elsbetiae_contig5179.13260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig5179:3061..3438+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAGAGTGCCTACTGGCCCTACAGATCACCCGAAACACCCGGAGGATCT
ACGAGTGGCAGGATTTGCGCGAGCAGCTCGCTGTCGTCCACACGGTGATG
ATTGCGCTGGGCGAGCCCCCGGCCAAAGTGAAGATCATCGTGGACGCGGT
GGCCCGGGGGAAGCGCCTCACGCACGCCGCGGGCGTGACCGGGAAGATGA
TCCTCGACATGTTCACGAATCTGCTCCCCCGGGCGCACGGCGTCGCCAAC
GAGCTCTTCTCCGCCGACGTAGCGCGAATCCGCAAGGAGAACGGCGGCGG
GATGGGACAAGGCTTCGTCGTCGGGGGACTCTCCGTCCCCTATGCGACCA
GGCCGCCCGGCCCCATGGGCTTCCCGACGGCAGAGTGCCTACTGGCCCTA
CAGATCACCCGAAACACCCGGAGGATCTACGAGTGGCAGGATTTGCGCGA
GCAGCTCGCTGTCGTCCACACGGTGATGATTGCGCTGGGCGAGCCCCCGG
CCAAAGTGAAGATCATCGTGGACGCGGTGGCCCGGGGGAAGCGCCTCACG
CACGCCGCGGGCGTGACCGGGAAGATGATCCTCGACATGTTCACGAATCT
GCTCCCCCGGGCGCACGGCGTCGCCAACGAGCTCTTCTCCGCCGACGTAG
CGCGAATCCGCAAGGAGAACGGCGGCGGGATGGGACAAGGCTTCGTCGTC
GGGGGACTCTCCGTCCCCTATGCGACCAGGCCGCCCGGCCCCATGGGCTT
CCCGAC
back to top