mRNA_L-elsbetiae_contig5158.13233.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5158.13233.1
Unique NamemRNA_L-elsbetiae_contig5158.13233.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5158.13233.1 vs. uniprot
Match: D8LPW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW7_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 9.190e-21
Identity = 53/97 (54.64%), Postives = 65/97 (67.01%), Query Frame = 1 
Query:   58 MPPMTFDALPFDVFRRVAAYLGRGDMSQLSRADMKRVVLSFCVWERTPV--AKGGGLAFFPRVAGNPEEEDGGAASGHAKESGRPLGAPIYRFLSPE 342
            MP MTFDALP+ +FRRVA  L R DM+QL+RAD+KRVVLSFC+WERT    +KGG      ++A  P +E+        +E   PLGAPIYRFL  E
Sbjct:    1 MPAMTFDALPYGIFRRVAVCLDRRDMAQLARADVKRVVLSFCLWERTTTGASKGG------KLARPPVDEE--------QECVPPLGAPIYRFLGAE 83
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5158.13233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPW7_ECTSI9.190e-2154.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5158contigL-elsbetiae_contig5158:2406..8617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size388
Cds size387
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5158.13233.1prot_L-elsbetiae_contig5158.13233.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5158 2406..8617 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816527.717201-CDS-L-elsbetiae_contig5158:2405..25001622816527.717201-CDS-L-elsbetiae_contig5158:2405..2500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5158 2406..2500 -
1691683624.556465-CDS-L-elsbetiae_contig5158:2405..25001691683624.556465-CDS-L-elsbetiae_contig5158:2405..2500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5158 2406..2500 -
1622816527.7286425-CDS-L-elsbetiae_contig5158:5073..52641622816527.7286425-CDS-L-elsbetiae_contig5158:5073..5264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5158 5074..5264 -
1691683624.5650527-CDS-L-elsbetiae_contig5158:5073..52641691683624.5650527-CDS-L-elsbetiae_contig5158:5073..5264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5158 5074..5264 -
1622816527.7424538-CDS-L-elsbetiae_contig5158:8516..86171622816527.7424538-CDS-L-elsbetiae_contig5158:8516..8617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5158 8517..8617 -
1691683624.5733774-CDS-L-elsbetiae_contig5158:8516..86171691683624.5733774-CDS-L-elsbetiae_contig5158:8516..8617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5158 8517..8617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5158.13233.1

>prot_L-elsbetiae_contig5158.13233.1 ID=prot_L-elsbetiae_contig5158.13233.1|Name=mRNA_L-elsbetiae_contig5158.13233.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MEFVLLLCRPRTEISGYTAMPPMTFDALPFDVFRRVAAYLGRGDMSQLSR
ADMKRVVLSFCVWERTPVAKGGGLAFFPRVAGNPEEEDGGAASGHAKESG
RPLGAPIYRFLSPEGNDGGEGGCIGAGAL
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mRNA from alignment at L-elsbetiae_contig5158:2406..8617-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5158.13233.1 ID=mRNA_L-elsbetiae_contig5158.13233.1|Name=mRNA_L-elsbetiae_contig5158.13233.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6212bp|location=Sequence derived from alignment at L-elsbetiae_contig5158:2406..8617- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAATTCGTGCTCTTGCTCTGCCGGCCCCGGACGGAGATTTCCGGCTA
CACAGCGATGCCTCCCATGACATTTGATGCCCTTCCCTTTGATGTATTCA
GGTGATGCGTTTTTGTGCTTTCTCTCGCTGTCGTTGTTCCGCCGCATCAT
GTCCTTCAAACGGCGGTGGACTCACCCAGGGCCAGATAGCGCAGGTGTCT
TGCGTATGAAGCACCCTTGGAGGCTACGAGGCCCTTGCACACTTGAAACT
TGAAACAAGCAACCCTCTAAAACCATGGAGGCACGGAATTGGTTGGCTGT
GATGTCAATGCATTCTGCAGCGCAGTGGTCGGGATCCGCCCACACAGCAG
GCAGCAGTTAGCAGCGGTGGTAGAGTAGACGATATAGGTGCCACAGCAGA
GTTGGTGCTTATTGGCCACACATGTTCACTTGATTGAGTCGTAATTGGTG
CCGAGAGCGCAAAGGCCCCAAGCTCTGCTGTTGTGGAGAGAACAACACAT
GCAATAATCTTACAGTACAGCACATGAACCCCTGCTCGCCGAGGAGGTGG
ATGGAGCGAGCTCGGCGAGTTGACATCAAACGCCTTAGATATAGTCTATG
GACCCCCCTCTAGCGATGGATCTTTCGCAGGTGGCAGGCGTAAGGTCAAC
AACAATTGCGTTAAATATTGCCCGGCCCCCCCCCTTTGGTGGGGGGTGTC
CGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTACTCGCCCGCGCGTTCAT
GGTGCAGGGTTCACAAATTTGAAATTATTACAATATGTTGGACCAGTGTT
TAGAGAGCGGACCTGGCAGATGTGATACGGTTTGCAGAACTCCTCCACAA
ACCATAGGGATACAGAATTGACCTCTTGTGGGAGAGACATCTTGGCTTGG
AAAGCTCAAGCACAAATTGTGATGGTTTGCGTACTGAGTAAGGGTGGTCG
CGAAACTTGTTCCTCAAAAATAATCAGCCCCCGCTAGAAATTGCTACAAT
TTACCAGAGAATGTTAACCGATACCACACAAGATAACACCTCCCCTCGGA
GAGAGAACGCGTGTTCCACTTGGAAATTGAGTTGGAGAACATGCTCCGAC
ACGATCATCGATTTCTCGCGCTACCGAGCTCGAACAGACCAACAGATGGG
TGCCGCAAAAAGCCAATGACCATGGTGTGTGACTACTACGCTGCGCAGTC
CATTTTCAGTCGTAAAGGTCCTCGTCAAGTTGACGGCGCCTCCCAAACAC
AACGGTGCAGCCAGGGAGCACCGGGATGTTGGGTGTCGTTTGGCCTTCGC
ACTCACCACAGACCGCAAACAAAGAAGCTAAACCCAACCCAGTACCACCA
CAGACAGCACGTGATGCTATGGTTTCCCGTCTGTGTTGGTGGTTGGTCGG
CTAGGTGGCTGCAGCGATCGTCTGATGTGCCTCGGCGTCTCCGGAGATGT
TACTTCGAAGTATAAGACACCCCCCAACTAAAAAAAACGCCTGCATCTCT
CTGCCTGTATATCTGGGAAGCCTTTTTTTGCCTCACGAGGCCGACACATC
CTCATCTCGCCTACTCTCTTCGGCATTCCCCATAAACATATCCCTAAGCT
GGTGGATCGTGCCCTTATGTATGTATCAGCCAAAACGGCGGGGCTACGAT
ACAGCTTTCGTACACAGGAAAAAGGTCGATGATATCTATCTGCGGGCCCG
CGAGGCGCAACACCACGGGGACACAGGAAAGACAAGAGGCCTCGAGCCTT
CCAGTACGTACGTACCGTAGGTGACACAGGATACCACACCCCCTGGACCG
AATTTTAGGGCTCGATTACTCCGCAACGAAGGTGCCAGCACCTATCGACA
CCTATTCGGACAGCCCTTGACTAGATCTTCCCAACGCCACCCTTTTTGGC
ACTGACACTCTTCTTGCGGGGGAGGAATCGAGCTTTGAAAATCTGTCCAG
GGGGTGTGGTATCTTGTGTCACCTACGGTAAGGTCCGCAGCTGGATCAAT
TCCCACGGGCTGGTTCTTTTGTGGCTCTGCAGCCCTGTAGAGAAAGCGTA
AAAAAGCTGAAAAAATCTCGGAAGTATGTATGCAGTCTGTGTGTGTGTGT
GTGTGTGTCCTTCCCATTTATTTCGGCGACAGTCCCCCCCAAGTGGAGAC
GTGTACTACGCCTTGCGGTGTACTTAGAGGCACTACACTTTTGCAAGTAG
TATTTATGTATGCAGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGT
GTGTCCTTTGCATTTTTTTCGGCGACAGTCCCCCCAAGTGGAGACGTGTA
CTACGCCTTGCGGTGTACTCAGAGGTACTACACTTTTGCAGTGCATTTGT
GATGTAAAACTAGAACCAACCGGGGTCACACAGGAGGAGGGGAACACTGG
GGGCTTTTTCTTCTTTTTTTTTCTTCTTTTTTTTGCCCCACCTTCCTCCT
GCGGTTCTTGCCTCGGGTTTTATCGCGAGAAGGGTTCAGCTGTCCCTTTC
CCTCGTCAACGTGATTACGTCGATGCAGTACATACGCAAAACCTTGACTT
CACCTTCGACGAGGGATGGTACACATATACCGCTGAACCCTTCTCGCGAT
ACAAATCGTGAGCATGCACCGCAGGAGGAAAGTGGAGCAAAACATTGAAA
AAAAGTTGGAAAAAATAGGAAAGCCGCGGTGTTTTACCCCCTCCTGTGTG
ACACCCCGGCTGCTCCGCCTAGATATTTATTGCACAGAGAACATTCACCG
AATGGTGTAGGCTACATGGTGCCATACACCGAAGGTATTTGTAGTATAAG
CACACTCGAACAGGTCGACAGGCGCTAGAATAGATGGGACCAAACAACAC
ACACACACACACACACACACACACACACAACAGGGATGCGGAATGACCGC
GGTTTGAAGCTCGTGACTGTCCGCCGGTCACGGGATTTCCACACTGTGTA
TGTAGTTTCAGCATAGAGTGGCGGGACGCCCCGTGACGGGCGTTTTCGTG
ACCGCCATTCCGCATCTTCGTGCCATACACACATACACACACAACATTGC
AAAGGGGCTTTTTAGTTCTCAACGGCTACCTTTCTCTCCTGACCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCGCCGCCCNN
NNNCCCTTTCCGTCCCCCACCCCCACACCCCCCCCACCTTGCAAAGGGGT
TTTTTTTTTTCCCACGGCCCCCTTTTCCCCCCTCCCCCCCCCCCCCCCCC
CCTCCCCTCCCGCCCCCCTGCTCTCGCCCCCCCGCTCCCGGTCGGTTGTA
CAGGCGCGTCGCCGCGTACCTGGGCCGGGGCGACATGTCACAGCTCTCTC
GCGCGGACATGAAGCGGGTGGTCCTATCCTTCTGTGTGTGGGAGCGGACC
CCAGTGGCCAAGGGCGGGGGGCTTGCGTTTTTCCCGCGCGTCGCAGGCAA
CCCGGAGGAGGAGGACGGAGGGGCGGCGTCAGGGCACGCTAAAGGTATGT
GTGTGTGTGTGTGTGTTATTTGTGTTTGTGTGTGTGGTGCCCTTCTTTAT
TCCCAACAGCCGCCATATTTGGCGTTTTGTAGGTGTGTGTGTGTGTGTGT
GTATGTGTATGTATCTGTGTTTGTGTGTGTGTGTGTATCTGTGTTTGTGT
GTGTGTGTGTGTGTGTGTTATTGTGTTTTTTTGTGTGGTGCCCTTCTTTG
TTCCCAACAGCCGCCATATTTGGCGTTTTGTAGGTGTGCGTGTGTATGTA
TCTGTGGTGTGTGTGTGTGTGTGTATCTGTGTTTGTGTGCCTTTCTTTGT
TGTTCCTAACAACCGCCATGTTAAGCGTTCTCCTGAGTCTTACAAAAAAC
ACGATCAAGACATTAGGTGGTGGTCGAGTCTTGCCAGCCGCCTACCGTAC
GCTGGAAGCTTGCGCCTTGAGCTGGAGTATTTTTCTAGTTGCAACCCGTC
GCAAACGTTGGGTGTGCAGGCGCGACTCTGGTGCGCACGTGGCGAGGTCT
GCATCAGCCTACCTCGTGCCCAGTCCGGTTCGCCCGGGCAACCAAGTGTT
GAGGATTGTGTTTGGTTGATTTTATTGATGTTGTGCGGATGTACCTTTTT
TTGCCTATATTTTTGTTTTTTATTCACGTTTACTTCCGGTACTCGATGGA
CTCCCTGTCACGAGGACATCTTGCCAGAGTACTGAACCATGGTCACACAG
AAGGGGTCCTTCTCCCCAAGGCCCCCACTACCCCCTTCTGCGGTGCTTGC
CTGACATTTTTAATTAATGCATACAAATGTCAGCAGCCTACGTCCAGTCT
GTGAAAAAGTCGTTCCAGAGGGGACTGTTGTAGGCATACTGACCCCCGTC
TTTCCGTCCAAGACATACTCGCACAAAATCCGTAATCCATTTATACACAG
TAGTTCGTTGGTGAAAAATTCATTTCGAACCACTCGTTTTATGTGTGAGA
TTTTTGTCGCGAGAAGGGTTCAGCCGTCCCTTCCTCCCTCGTCGACGGCG
AGGCCGAAGTTTGTGTACACACGCTGGGCGCTATCCACTGACTGACAGGG
ACGGAAGCGAGAGGAAGAAAAAAGCTCACTTCGCAAGAAGAAGCCGCTTC
CGCCGGGTTTCGAACCCATGATCTACCTGCTACAAGTAGAAGGTGTTCGG
GGGTACCAGCTAGACCACCGGGGCCACCGTACATACCGTAGGTGACACAA
CCGTAGGTGACACAAGATACCACACCCCCTGGACATATTTTCAAAGCTCG
ATTTCCTCCCCAGCAAGAAGAGAGCTAAATAGTGCCGGAAGGGGTGGCGT
TGGAAAGATCTAGTCGAGGGCTGTCCGAAAATGTGTCGTTTAGTGCTGGC
ACCCTCTTCGTTACGGAGTAATGGAGCTCTCAAATTCGATCCAGGGGGTT
TGGTATCTTGTGTCACCTGCGGTACATACATGCTTCCATCACAACGGCCT
ACCGTTGCGCTAGCGTTTTCACATCTCATTTTTTCTTTTTTCAGCTCCAG
AAAACTGCTGTGCCACGCCCGCCGATCACCTCGGTACGTTTCATTCACCG
CCTCCGAGGTTCACGCAGACAGAAAACTGAAGTACAGTCGACCCCGCTTT
AAGGACGCACATGGTTTTCCCCGAAAAAAGCGTCCTTAAAGCGGGGTTGC
GTCCTTCAAATTCAGGGGACGATAGCTCACCATCCCCGGGGTCGACGGAG
GCGTTTTGTACCTCGAACGACGCGCCTTTGGCAGGGGGGACAGGTGCACC
AAGGGACACATAAATTGCTCGACGAGCAACCCGTGGGTGTGGCAGAAAAA
AAGAAAACACGGCAGTTACCGTAGGTGACACGAGATATCACACCCCCCTG
GCCATATTTTGAAACGCTCGATTCATCCTCGGCAAGAAGCATGCCAGTGC
CTTAAGGGGGTGGCGTTGGAAAAAGCTAGTCGAGGGCTGTCCAAAAATGC
AAGCCTTAAATCTTTGCAGGGGAGATGTTGAACTCTTCTGATATTTTTGG
TTGTTTTTCTGCTCGCTTCTCCAAATATTACGTCTCTGTATGGAATACCG
TTTGAACCCCATATTTTCTGTATGGAATACTGTTTGAACCCCATATCGAG
TCCTTGCTCTAGTGTGGGGTAGGTTCCATCTTTGATTCATTGTTTATTTT
TTTAAAATGCGCCGTTTGGTGCTGGCACCCTTCTGATTACGAAGTGATGG
CACTCTAAAAAGTGGGTCCGGGGGGGGGGGGTTGGTTGAGTCAGGGCAAG
CCGAGGCAAGAAGGCGTCCTTACGGAACGAATTCCCCGACAATATCTAAA
AGTGAAAATCTGTTTCGGGTTCTGCCGCGCTGCTTCAGCACGATCTTGTG
ATCGTGAAAGCCATATATGAATAAGATCTGCGAAAAAAACGCAGTGAACC
CGTGTACGCGCGTCGTGGGATATCTTAGCTCCTTGATCTTCCGCTGTTCG
ATTCTTCGGCTCCCGGGTCTTGCTTTGCTTCACAGCGCGTTCGCAGCCTC
GCTGTCGCGACCTTCGATGCCAGATTATTCAGCTGTTTCCATGGCGTCCG
TTTGTCTTGCCGTGCAGAGAGCGGCAGACCCTTAGGAGCGCCAATCTACA
GGTTCTTGAGCCCCGAGGGAAACGATGGAGGGGAGGGTGGATGCATCGGC
GCCGGGGCGCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5158:2406..8617-

>mRNA_L-elsbetiae_contig5158.13233.1 ID=mRNA_L-elsbetiae_contig5158.13233.1|Name=mRNA_L-elsbetiae_contig5158.13233.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig5158:2406..8617- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAATTCGTGCTCTTGCTCTGCCGGCCCCGGACGGAGATTTCCGGCTA
CACAGCGATGCCTCCCATGACATTTGATGCCCTTCCCTTTGATGTATTCA
GATGGAATTCGTGCTCTTGCTCTGCCGGCCCCGGACGGAGATTTCCGGCT
ACACAGCGATGCCTCCCATGACATTTGATGCCCTTCCCTTTGATGTATTC
AGGCGCGTCGCCGCGTACCTGGGCCGGGGCGACATGTCACAGCTCTCTCG
CGCGGACATGAAGCGGGTGGTCCTATCCTTCTGTGTGTGGGAGCGGACCC
CAGTGGCCAAGGGCGGGGGGCTTGCGTTTTTCCCGCGCGTCGCAGGCAAC
CCGGAGGAGGAGGACGGAGGGGCGGCGTCAGGGCACGCTAAAGGCGCGTC
GCCGCGTACCTGGGCCGGGGCGACATGTCACAGCTCTCTCGCGCGGACAT
GAAGCGGGTGGTCCTATCCTTCTGTGTGTGGGAGCGGACCCCAGTGGCCA
AGGGCGGGGGGCTTGCGTTTTTCCCGCGCGTCGCAGGCAACCCGGAGGAG
GAGGACGGAGGGGCGGCGTCAGGGCACGCTAAAGAGAGCGGCAGACCCTT
AGGAGCGCCAATCTACAGGTTCTTGAGCCCCGAGGGAAACGATGGAGGGG
AGGGTGGATGCATCGGCGCCGGGGCGCTGAGAGCGGCAGACCCTTAGGAG
CGCCAATCTACAGGTTCTTGAGCCCCGAGGGAAACGATGGAGGGGAGGGT
GGATGCATCGGCGCCGGGGCGCTG
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