mRNA_L-elsbetiae_contig5146.13219.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5146.13219.1
Unique NamemRNA_L-elsbetiae_contig5146.13219.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5146.13219.1 vs. uniprot
Match: A0A6H5KYH1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH1_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 1.920e-71
Identity = 170/300 (56.67%), Postives = 194/300 (64.67%), Query Frame = 1 
Query:  274 AAADHESVTLLLSSGASPSSINSCGLSPGACFLRTPTDALAVPP-----GGAVHVREIRRTLRQHRERFGHVRRLADTSTKRAAVEAVGDRAAAAVHRFVEFALKM--------------QRCDLEARAHRTRLRRLDKFRSDILSDPDR-PAAAAANN--HSLLLDLSPEREGRAARAVKGRRRAAAEAVKGARLALRDLGDWKGRVLAERAAAASFLGLVDPALAFAAGASCAGGGQEAGCGGVDLPPF---------EADVVVADPAFLAAEGTAEAGSESG--RLRHASWTGTGSE 1074
            AAAD +SV LLLS+GA+ S +NSCGL PGA FLR P    A+       G +  V+++R  +R HRER GHVRRLAD S KR AVEAV D A A+VHRFV+FALK+              QR DL+AR HRTRLRRLDKFRSDILSDP + P A   NN  +SLLLDLSPERE RAAR VKGR +AAAEA K  +LALRDL DW+GR+ AERAA   FL   DP LA   GASC     E G GG D             E DVV+ADP FLA E    A ++SG    RHASWTGTG+E
Sbjct:  390 AAADLDSVALLLSAGANASVVNSCGLCPGAGFLRPPNGGAAIATATTYTGSSERVKDVRWMIRGHRERLGHVRRLADASAKRVAVEAVADGATASVHRFVDFALKVPMLVVGTQRETWTVQRWDLDARNHRTRLRRLDKFRSDILSDPPKQPTAVDGNNGGNSLLLDLSPERESRAARVVKGRTKAAAEATKEGKLALRDLEDWRGRISAERAAVEHFLRGADPTLALVPGASCDAADGE-GLGGWDPGGLYRPGGRAGCEVDVVIADPGFLAGEADGRAANDSGGRSRRHASWTGTGAE 688
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5146.13219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYH1_9PHAE1.920e-7156.67Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5146contigL-elsbetiae_contig5146:7318..9501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons4
Model size1131
Cds size1128
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5146.13219.1prot_L-elsbetiae_contig5146.13219.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5146 7318..9499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816526.2032294-CDS-L-elsbetiae_contig5146:7317..75371622816526.2032294-CDS-L-elsbetiae_contig5146:7317..7537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5146 7318..7537 +
1691683623.373089-CDS-L-elsbetiae_contig5146:7317..75371691683623.373089-CDS-L-elsbetiae_contig5146:7317..7537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5146 7318..7537 +
1622816526.2160754-CDS-L-elsbetiae_contig5146:7565..76011622816526.2160754-CDS-L-elsbetiae_contig5146:7565..7601Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5146 7566..7601 +
1691683623.3841338-CDS-L-elsbetiae_contig5146:7565..76011691683623.3841338-CDS-L-elsbetiae_contig5146:7565..7601Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5146 7566..7601 +
1622816526.2280016-CDS-L-elsbetiae_contig5146:7965..82821622816526.2280016-CDS-L-elsbetiae_contig5146:7965..8282Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5146 7966..8282 +
1691683623.3992782-CDS-L-elsbetiae_contig5146:7965..82821691683623.3992782-CDS-L-elsbetiae_contig5146:7965..8282Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5146 7966..8282 +
1622816526.2396898-CDS-L-elsbetiae_contig5146:8944..94991622816526.2396898-CDS-L-elsbetiae_contig5146:8944..9499Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5146 8945..9499 +
1691683623.4131517-CDS-L-elsbetiae_contig5146:8944..94991691683623.4131517-CDS-L-elsbetiae_contig5146:8944..9499Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5146 8945..9499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5146.13219.1

>prot_L-elsbetiae_contig5146.13219.1 ID=prot_L-elsbetiae_contig5146.13219.1|Name=mRNA_L-elsbetiae_contig5146.13219.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=376bp
RGRPEAALARRLPRPRRLPRGHAPPPRGWRGLPGRDSGARSGGGSLHAGS
DGRGGYGAACRGVVGSARRNRGASEADARNRFGSTALHLAAAAADHESVT
LLLSSGASPSSINSCGLSPGACFLRTPTDALAVPPGGAVHVREIRRTLRQ
HRERFGHVRRLADTSTKRAAVEAVGDRAAAAVHRFVEFALKMQRCDLEAR
AHRTRLRRLDKFRSDILSDPDRPAAAAANNHSLLLDLSPEREGRAARAVK
GRRRAAAEAVKGARLALRDLGDWKGRVLAERAAAASFLGLVDPALAFAAG
ASCAGGGQEAGCGGVDLPPFEADVVVADPAFLAAEGTAEAGSESGRLRHA
SWTGTGSETPPFESSPTPTPAVGSRD
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mRNA from alignment at L-elsbetiae_contig5146:7318..9501+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5146.13219.1 ID=mRNA_L-elsbetiae_contig5146.13219.1|Name=mRNA_L-elsbetiae_contig5146.13219.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2184bp|location=Sequence derived from alignment at L-elsbetiae_contig5146:7318..9501+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGGTCGTCCTGAGGCTGCTCTCGCACGGCGTCTCCCCCGACCTCGCCG
ACTCCCACGGGGCCACGCCCCTCCACCTCGCGGCTGGCGGGGGCTACCGG
GCCGCGACTCAGGCGCTCGTTCGGGAGGGGGGAGCCTCCACGCTGGCAGC
GACGGACGAGGGGGATACGGCGCTGCATGCCGCGGCGTGGTCGGGAGCGC
GCGGCGGAACCGCGGGGCGTGTGGTGCGCTTGCTGTTGGGTTGCGGAGCT
GAAGCGGACGCGCGGAACCGATTCGGATCGACGGGTATGTGTACACGGGG
AGTAAAACCTCGAGATGTGGCGTTTGCTGTTGCGGATAAATATACTGCTT
GTAGCGTGTGCGCCAGATTTCGATACCTCAAAGTTTCTTCTCCTCTCTGG
CTATGTTTCCCAAGGTTGGTGAAGGCTGGAACGCGTTTTGGGCCGAGGTT
TGGTGGCAGACTGCTGCCACTGCTGCTGTGGTTGGCACGACGCTGCCCCA
CCTTTACCGCGGGCGAGGAGAGAGGGTGGTATTTCTCTCCCTCGCTCTCC
CTCTCTCTCCCTCTTCCCCTCCCCCTCTCTCTCTCCCTCTCTCTCTCTCA
TCAGTGTCTTCGCTTTCCACCCTCCCCACGGCTCTTTCGCGCGAGCAGCG
CTTCATCTGGCGGCTGCCGCGGCGGATCACGAGTCGGTGACGCTTCTCCT
GTCGAGCGGCGCCAGCCCCAGCAGCATTAACTCCTGTGGGCTTAGCCCGG
GCGCGTGCTTTCTTCGCACGCCGACGGACGCGCTCGCGGTGCCGCCGGGG
GGCGCCGTGCATGTGAGAGAGATAAGGCGGACTCTTCGGCAGCACCGGGA
GCGGTTCGGGCACGTCAGGAGGCTGGCTGACACGAGCACGAAGCGCGCGG
CGGTCGAGGCGGTGGGGGACAGGGCGGCGGCGGCCGTCCACCGCTTCGTC
GAGTTTGCGCTGAAGGTTTCTGTATATCTACCGTTCGTGCCCGTGCATAT
GTATTTTTCCTCGATGATAAAGCAGAGCGGGCGGCTGCTGTCGTGCTGGT
GTCGGTTTTAACAAAAAGCCTACAGCAGTGTGGCAGATGATATTAGACTC
AACCTGTTGACGGCAGTTGAGGCGTCTAGAAATAACTCCTCCTGCGCTGT
GTAGGCGCGGAGGCAATGGATGCAACGCAGGTTAGAAGAGGCCAGGTTGT
GAAGACCGGCCTTCGCGAAGAGTTCCTGCAATTGCTGTCTATACAGGAAA
TAATAATAGACAGGGGTTCCGTAACCCTAACCCCAACCCTAACCCCAAAC
CGACCCCCCATTAGCCATTTCCATACCTTATCCCATATGATTTCTTCCAG
TAAAACCTGCGAAGGCTACTGGGTTGTGATCACCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGGCGGT
CCCCGCGGCGCGGGGGGCCCCCCCCCCCCCGCCCCNNNNNNNNNNCCCCC
CCCCTTCTCTGCCCCTCTCTCCCTCTTTTTTTTTTCGAGAAATTCCGGTC
GGGGTGGCTGGGTTTGTTCCCCCCCCCCCCCCCCCCCCCCCCAATCGCGC
TGCCCTCCTCGATCGCACGCGCACCAGATGCAGCGTTGTGACCTTGAGGC
TCGGGCTCACCGCACGCGCCTCCGGCGCTTGGACAAGTTTCGATCCGACA
TCCTCTCCGACCCTGATCGACCCGCCGCCGCCGCCGCGAACAACCATTCC
TTGCTGCTGGACCTGTCGCCTGAGCGAGAGGGCAGGGCTGCCCGGGCAGT
CAAGGGCCGAAGGAGGGCGGCGGCGGAGGCGGTAAAGGGGGCCAGGCTGG
CGCTGCGAGACCTGGGAGACTGGAAGGGGAGAGTGCTGGCCGAGCGCGCG
GCAGCGGCTTCTTTCTTGGGGCTCGTGGACCCGGCTCTTGCCTTCGCGGC
CGGCGCTTCCTGCGCTGGCGGAGGGCAAGAAGCGGGCTGCGGGGGAGTGG
ATTTGCCTCCGTTCGAGGCAGACGTCGTTGTCGCGGACCCCGCGTTCCTC
GCCGCAGAGGGTACCGCCGAGGCCGGTAGCGAGAGCGGCAGGTTGCGGCA
CGCCTCTTGGACCGGAACCGGGTCAGAGACCCCGCCGTTTGAATCGTCGC
CCACGCCGACTCCCGCCGTCGGGAGCAGAGACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5146:7318..9501+

>mRNA_L-elsbetiae_contig5146.13219.1 ID=mRNA_L-elsbetiae_contig5146.13219.1|Name=mRNA_L-elsbetiae_contig5146.13219.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2256bp|location=Sequence derived from alignment at L-elsbetiae_contig5146:7318..9501+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGGTCGTCCTGAGGCTGCTCTCGCACGGCGTCTCCCCCGACCTCGCCG
ACTCCCACGGGGCCACGCCCCTCCACCTCGCGGCTGGCGGGGGCTACCGG
GCCGCGACTCAGGCGCTCGTTCGGGAGGGGGGAGCCTCCACGCTGGCAGC
GACGGACGAGGGGGATACGGCGCTGCATGCCGCGGCGTGGTCGGGAGCGC
GCGGCGGAACCGCGGGGCGTCGAGGTCGTCCTGAGGCTGCTCTCGCACGG
CGTCTCCCCCGACCTCGCCGACTCCCACGGGGCCACGCCCCTCCACCTCG
CGGCTGGCGGGGGCTACCGGGCCGCGACTCAGGCGCTCGTTCGGGAGGGG
GGAGCCTCCACGCTGGCAGCGACGGACGAGGGGGATACGGCGCTGCATGC
CGCGGCGTGGTCGGGAGCGCGCGGCGGAACCGCGGGGCGTCTGAAGCGGA
CGCGCGGAACCGATTCGGATCGACGGCTGAAGCGGACGCGCGGAACCGAT
TCGGATCGACGGCGCTTCATCTGGCGGCTGCCGCGGCGGATCACGAGTCG
GTGACGCTTCTCCTGTCGAGCGGCGCCAGCCCCAGCAGCATTAACTCCTG
TGGGCTTAGCCCGGGCGCGTGCTTTCTTCGCACGCCGACGGACGCGCTCG
CGGTGCCGCCGGGGGGCGCCGTGCATGTGAGAGAGATAAGGCGGACTCTT
CGGCAGCACCGGGAGCGGTTCGGGCACGTCAGGAGGCTGGCTGACACGAG
CACGAAGCGCGCGGCGGTCGAGGCGGTGGGGGACAGGGCGGCGGCGGCCG
TCCACCGCTTCGTCGAGTTTGCGCTGAAGCGCTTCATCTGGCGGCTGCCG
CGGCGGATCACGAGTCGGTGACGCTTCTCCTGTCGAGCGGCGCCAGCCCC
AGCAGCATTAACTCCTGTGGGCTTAGCCCGGGCGCGTGCTTTCTTCGCAC
GCCGACGGACGCGCTCGCGGTGCCGCCGGGGGGCGCCGTGCATGTGAGAG
AGATAAGGCGGACTCTTCGGCAGCACCGGGAGCGGTTCGGGCACGTCAGG
AGGCTGGCTGACACGAGCACGAAGCGCGCGGCGGTCGAGGCGGTGGGGGA
CAGGGCGGCGGCGGCCGTCCACCGCTTCGTCGAGTTTGCGCTGAAGATGC
AGCGTTGTGACCTTGAGGCTCGGGCTCACCGCACGCGCCTCCGGCGCTTG
GACAAGTTTCGATCCGACATCCTCTCCGACCCTGATCGACCCGCCGCCGC
CGCCGCGAACAACCATTCCTTGCTGCTGGACCTGTCGCCTGAGCGAGAGG
GCAGGGCTGCCCGGGCAGTCAAGGGCCGAAGGAGGGCGGCGGCGGAGGCG
GTAAAGGGGGCCAGGCTGGCGCTGCGAGACCTGGGAGACTGGAAGGGGAG
AGTGCTGGCCGAGCGCGCGGCAGCGGCTTCTTTCTTGGGGCTCGTGGACC
CGGCTCTTGCCTTCGCGGCCGGCGCTTCCTGCGCTGGCGGAGGGCAAGAA
GCGGGCTGCGGGGGAGTGGATTTGCCTCCGTTCGAGGCAGACGTCGTTGT
CGCGGACCCCGCGTTCCTCGCCGCAGAGGGTACCGCCGAGGCCGGTAGCG
AGAGCGGCAGGTTGCGGCACGCCTCTTGGACCGGAACCGGGTCAGAGACC
CCGCCGTTTGAATCGTCGCCCACGCCGACTCCCGCCGTCGGGAGCAGAGA
CATGCAGCGTTGTGACCTTGAGGCTCGGGCTCACCGCACGCGCCTCCGGC
GCTTGGACAAGTTTCGATCCGACATCCTCTCCGACCCTGATCGACCCGCC
GCCGCCGCCGCGAACAACCATTCCTTGCTGCTGGACCTGTCGCCTGAGCG
AGAGGGCAGGGCTGCCCGGGCAGTCAAGGGCCGAAGGAGGGCGGCGGCGG
AGGCGGTAAAGGGGGCCAGGCTGGCGCTGCGAGACCTGGGAGACTGGAAG
GGGAGAGTGCTGGCCGAGCGCGCGGCAGCGGCTTCTTTCTTGGGGCTCGT
GGACCCGGCTCTTGCCTTCGCGGCCGGCGCTTCCTGCGCTGGCGGAGGGC
AAGAAGCGGGCTGCGGGGGAGTGGATTTGCCTCCGTTCGAGGCAGACGTC
GTTGTCGCGGACCCCGCGTTCCTCGCCGCAGAGGGTACCGCCGAGGCCGG
TAGCGAGAGCGGCAGGTTGCGGCACGCCTCTTGGACCGGAACCGGGTCAG
AGACCCCGCCGTTTGAATCGTCGCCCACGCCGACTCCCGCCGTCGGGAGC
AGAGAC
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