mRNA_L-elsbetiae_contig5137.13206.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5137.13206.1
Unique NamemRNA_L-elsbetiae_contig5137.13206.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5137.13206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5137contigL-elsbetiae_contig5137:10920..11313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size393
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816524.9350543-UTR-L-elsbetiae_contig5137:10919..109201622816524.9350543-UTR-L-elsbetiae_contig5137:10919..10920Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5137 10920..10920 +
1691683622.5323644-UTR-L-elsbetiae_contig5137:10919..109201691683622.5323644-UTR-L-elsbetiae_contig5137:10919..10920Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5137 10920..10920 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816524.9459348-CDS-L-elsbetiae_contig5137:10920..113131622816524.9459348-CDS-L-elsbetiae_contig5137:10920..11313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5137 10921..11313 +
1691683622.5472724-CDS-L-elsbetiae_contig5137:10920..113131691683622.5472724-CDS-L-elsbetiae_contig5137:10920..11313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5137 10921..11313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5137.13206.1prot_L-elsbetiae_contig5137.13206.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5137 10921..11313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5137.13206.1

>prot_L-elsbetiae_contig5137.13206.1 ID=prot_L-elsbetiae_contig5137.13206.1|Name=mRNA_L-elsbetiae_contig5137.13206.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
MHVLQIKQTQQHLSTTRLDEAVTIIVVSRSEYFSNKSYRTKKLDWANCCA
RTIHTKRYFFVSHGEDKTGPERSSRPTRLGAPHIIVYIYNKYSLDVAFLF
SLLDTISANLHRRIPYYRERTLKIYPPGGER
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mRNA from alignment at L-elsbetiae_contig5137:10920..11313+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5137.13206.1 ID=mRNA_L-elsbetiae_contig5137.13206.1|Name=mRNA_L-elsbetiae_contig5137.13206.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=394bp|location=Sequence derived from alignment at L-elsbetiae_contig5137:10920..11313+ (Laminarionema elsbetiae ELsaHSoW15)
GATGCATGTTCTCCAAATCAAACAAACGCAGCAGCATCTATCGACGACGC
GTCTCGACGAGGCGGTCACGATTATTGTTGTTTCACGTTCCGAATATTTC
TCTAACAAAAGTTATCGCACAAAAAAACTCGATTGGGCAAATTGTTGTGC
ACGGACCATACATACAAAAAGATATTTTTTTGTCTCGCACGGCGAGGATA
AAACGGGTCCTGAAAGAAGTTCTCGCCCGACGAGATTGGGGGCACCGCAT
ATAATAGTATATATATATAATAAGTATTCCCTCGACGTCGCGTTCTTATT
TTCGCTACTAGATACAATAAGTGCGAACCTGCACCGCCGCATCCCTTATT
ATCGGGAACGAACGCTGAAAATCTACCCGCCGGGGGGGGAAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5137:10920..11313+

>mRNA_L-elsbetiae_contig5137.13206.1 ID=mRNA_L-elsbetiae_contig5137.13206.1|Name=mRNA_L-elsbetiae_contig5137.13206.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig5137:10920..11313+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATGTTCTCCAAATCAAACAAACGCAGCAGCATCTATCGACGACGCG
TCTCGACGAGGCGGTCACGATTATTGTTGTTTCACGTTCCGAATATTTCT
CTAACAAAAGTTATCGCACAAAAAAACTCGATTGGGCAAATTGTTGTGCA
CGGACCATACATACAAAAAGATATTTTTTTGTCTCGCACGGCGAGGATAA
AACGGGTCCTGAAAGAAGTTCTCGCCCGACGAGATTGGGGGCACCGCATA
TAATAGTATATATATATAATAAGTATTCCCTCGACGTCGCGTTCTTATTT
TCGCTACTAGATACAATAAGTGCGAACCTGCACCGCCGCATCCCTTATTA
TCGGGAACGAACGCTGAAAATCTACCCGCCGGGGGGGGAAAGGATGCATG
TTCTCCAAATCAAACAAACGCAGCAGCATCTATCGACGACGCGTCTCGAC
GAGGCGGTCACGATTATTGTTGTTTCACGTTCCGAATATTTCTCTAACAA
AAGTTATCGCACAAAAAAACTCGATTGGGCAAATTGTTGTGCACGGACCA
TACATACAAAAAGATATTTTTTTGTCTCGCACGGCGAGGATAAAACGGGT
CCTGAAAGAAGTTCTCGCCCGACGAGATTGGGGGCACCGCATATAATAGT
ATATATATATAATAAGTATTCCCTCGACGTCGCGTTCTTATTTTCGCTAC
TAGATACAATAAGTGCGAACCTGCACCGCCGCATCCCTTATTATCGGGAA
CGAACGCTGAAAATCTACCCGCCGGGGGGGGAAAGG
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