mRNA_L-elsbetiae_contig5133.13202.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5133.13202.1
Unique NamemRNA_L-elsbetiae_contig5133.13202.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5133.13202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5133contigL-elsbetiae_contig5133:4022..4630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size611
Cds size609
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816524.6204362-CDS-L-elsbetiae_contig5133:4021..46301622816524.6204362-CDS-L-elsbetiae_contig5133:4021..4630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5133 4022..4630 +
1691683622.310266-CDS-L-elsbetiae_contig5133:4021..46301691683622.310266-CDS-L-elsbetiae_contig5133:4021..4630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5133 4022..4630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5133.13202.1prot_L-elsbetiae_contig5133.13202.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5133 4022..4630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5133.13202.1

>prot_L-elsbetiae_contig5133.13202.1 ID=prot_L-elsbetiae_contig5133.13202.1|Name=mRNA_L-elsbetiae_contig5133.13202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=203bp
AATAGAAFRKNRSRLEAAMASSAHSKAAAAAAADGGFDPDRVGIARGGAS
CTVPASGSGGSGAGSAAVWPAFSSAGGAGGGGGAGTRQRGGLSPQLPPSG
SPPPPPPPGLLPPAKIPPPVSRPPPDKLATEHPGPVSAFAEEEMLTEMGF
DRVRAVQALETCSGNVERAAEFLLTGFGGGGGGDSAVHGPHLPGAGGQDG
DGG
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mRNA from alignment at L-elsbetiae_contig5133:4022..4630+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5133.13202.1 ID=mRNA_L-elsbetiae_contig5133.13202.1|Name=mRNA_L-elsbetiae_contig5133.13202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=609bp|location=Sequence derived from alignment at L-elsbetiae_contig5133:4022..4630+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCTACTGCCGGCGCCGCGTTTCGGAAGAACAGATCCCGCTTGGAGGC
TGCCATGGCGTCGTCGGCACACTCGAAGGCGGCGGCGGCGGCGGCAGCCG
ACGGCGGTTTCGACCCCGACCGAGTGGGGATCGCTCGTGGGGGAGCCTCG
TGTACGGTCCCCGCCTCCGGCAGCGGCGGCAGCGGCGCGGGAAGCGCGGC
CGTGTGGCCAGCTTTTTCGTCGGCCGGCGGAGCCGGGGGAGGAGGGGGTG
CCGGGACGCGGCAGAGGGGTGGACTATCTCCGCAGCTCCCGCCGTCGGGG
TCCCCACCCCCACCCCCACCCCCGGGACTCCTGCCGCCGGCCAAAATCCC
CCCGCCCGTCTCGCGGCCGCCGCCGGACAAACTGGCCACCGAGCATCCGG
GGCCGGTGTCTGCGTTCGCCGAAGAGGAGATGCTCACCGAGATGGGGTTC
GACAGGGTGCGCGCGGTGCAGGCTCTCGAGACGTGCAGTGGCAACGTAGA
GCGCGCCGCTGAGTTTCTGCTGACGGGCTTCGGCGGCGGCGGCGGCGGAG
ACAGCGCCGTGCACGGGCCGCATTTGCCCGGCGCGGGGGGGCAGGACGGT
GACGGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5133:4022..4630+

>mRNA_L-elsbetiae_contig5133.13202.1 ID=mRNA_L-elsbetiae_contig5133.13202.1|Name=mRNA_L-elsbetiae_contig5133.13202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1218bp|location=Sequence derived from alignment at L-elsbetiae_contig5133:4022..4630+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCTACTGCCGGCGCCGCGTTTCGGAAGAACAGATCCCGCTTGGAGGC
TGCCATGGCGTCGTCGGCACACTCGAAGGCGGCGGCGGCGGCGGCAGCCG
ACGGCGGTTTCGACCCCGACCGAGTGGGGATCGCTCGTGGGGGAGCCTCG
TGTACGGTCCCCGCCTCCGGCAGCGGCGGCAGCGGCGCGGGAAGCGCGGC
CGTGTGGCCAGCTTTTTCGTCGGCCGGCGGAGCCGGGGGAGGAGGGGGTG
CCGGGACGCGGCAGAGGGGTGGACTATCTCCGCAGCTCCCGCCGTCGGGG
TCCCCACCCCCACCCCCACCCCCGGGACTCCTGCCGCCGGCCAAAATCCC
CCCGCCCGTCTCGCGGCCGCCGCCGGACAAACTGGCCACCGAGCATCCGG
GGCCGGTGTCTGCGTTCGCCGAAGAGGAGATGCTCACCGAGATGGGGTTC
GACAGGGTGCGCGCGGTGCAGGCTCTCGAGACGTGCAGTGGCAACGTAGA
GCGCGCCGCTGAGTTTCTGCTGACGGGCTTCGGCGGCGGCGGCGGCGGAG
ACAGCGCCGTGCACGGGCCGCATTTGCCCGGCGCGGGGGGGCAGGACGGT
GACGGCGGGGCCGCTACTGCCGGCGCCGCGTTTCGGAAGAACAGATCCCG
CTTGGAGGCTGCCATGGCGTCGTCGGCACACTCGAAGGCGGCGGCGGCGG
CGGCAGCCGACGGCGGTTTCGACCCCGACCGAGTGGGGATCGCTCGTGGG
GGAGCCTCGTGTACGGTCCCCGCCTCCGGCAGCGGCGGCAGCGGCGCGGG
AAGCGCGGCCGTGTGGCCAGCTTTTTCGTCGGCCGGCGGAGCCGGGGGAG
GAGGGGGTGCCGGGACGCGGCAGAGGGGTGGACTATCTCCGCAGCTCCCG
CCGTCGGGGTCCCCACCCCCACCCCCACCCCCGGGACTCCTGCCGCCGGC
CAAAATCCCCCCGCCCGTCTCGCGGCCGCCGCCGGACAAACTGGCCACCG
AGCATCCGGGGCCGGTGTCTGCGTTCGCCGAAGAGGAGATGCTCACCGAG
ATGGGGTTCGACAGGGTGCGCGCGGTGCAGGCTCTCGAGACGTGCAGTGG
CAACGTAGAGCGCGCCGCTGAGTTTCTGCTGACGGGCTTCGGCGGCGGCG
GCGGCGGAGACAGCGCCGTGCACGGGCCGCATTTGCCCGGCGCGGGGGGG
CAGGACGGTGACGGCGGG
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