mRNA_L-elsbetiae_contig5120.13187.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Match: D8LRI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRI6_ECTSI) HSP 1 Score: 408 bits (1049), Expect = 8.070e-138 Identity = 225/346 (65.03%), Postives = 254/346 (73.41%), Query Frame = 1 Query: 1 FFAHRRSQASPTMRCQEEPSRRRARGTAD----RGSWRAGLSSWVAGATSFSRSSLYASVPAGIGIGAWWDGXXXXXXXXXN-----GTDAGVPAGDAMDGEGDSDEATGAY---VCSSXXXXXXXXXXXXXXXAFLAPKESRPFAPWVWLSAMWGLYAVWLRRSPLVTKALTSGALALGGDMAAQFFEFRQQAVSSRKGPFLKDTRRLLAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAASHLLIDTFVFDPMFVASFFCVTGILESRSLKQDVLPALRREFWPAVHGSWVVSFCFCPLQFITFRYLPLEFRVLSVNVCDIAWTSVLSYFSHKAAPEEAV 1002 F+ R +Q +P MRCQ E RA A + SW G+SSWVAGATSFSRS+++AS P G +GAWW+G XXXXXXXX GTD AM G+ D+A GA CS+ + PK+S F PWVWLSAMWG+YA WLRRSPLV KA+TSG L L GDMAAQFFEF+Q+A S R+GPFLK+ RRL AVAIDSILITGPALHALYGLLECLIPT GGFVPAA H++IDTFVFDPMFVASFFCVTG+LESR L++ +LPALRREFWPAV GSW+VS FCPLQF TFRYLPLEFRVLSVN CDIAWTSV+SYFSHKA P E V Sbjct: 37 FWVPRHAQVAPKMRCQGECGTTRAATAAANASRQASWGVGVSSWVAGATSFSRSAIHASTPEG--VGAWWNGSXXXXXXXXXXXXXXGTDGXXXXXGAM---GEGDDAKGASDMNACSTQHRDRGERASSTVDMSGGEPKKSASFGPWVWLSAMWGMYAAWLRRSPLVAKAVTSGVLGLSGDMAAQFFEFQQKAESGRRGPFLKNNRRLTAVAIDSILITGPALHALYGLLECLIPTVGGGFVPAALHVVIDTFVFDPMFVASFFCVTGMLESRPLRKSILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHKAVPAEGV 377
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Match: A0A6H5JK43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK43_9PHAE) HSP 1 Score: 406 bits (1043), Expect = 8.600e-137 Identity = 226/342 (66.08%), Postives = 254/342 (74.27%), Query Frame = 1 Query: 1 FFAHRRSQASPTMRCQEE----PSRRRARGTADRGSWRAGLSSWVAGATSFSRSSLYASVPAGIGIGAWWDGXXXXXXXXX-----NGTDAGVPAGDAMDGEGDSDE-ATGAYVCSSXXXXXXXXXXXXXXXAFLAPKESRPFAPWVWLSAMWGLYAVWLRRSPLVTKALTSGALALGGDMAAQFFEFRQQAVSSRKGPFLKDTRRLLAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAASHLLIDTFVFDPMFVASFFCVTGILESRSLKQDVLPALRREFWPAVHGSWVVSFCFCPLQFITFRYLPLEFRVLSVNVCDIAWTSVLSYFSHKAAPEE 996 F+ R Q +P MRC + P+ + SW G+SSWVA AT FSRS+L+AS P G IGAWW+GXXXXXXXXX NGTD AM GEGD + A+ CS+ + A K+S F PWVWLSAMWG+YA WLRRSPLV KA+TSG L L GDMAAQFFEF+Q+A S R+GPFLK+TRRL AVAIDSILITGPALHALYGLLECLIPTAAGGFVPAA H++IDTFVFDPMFVASFFCVTG+LESRSL++ +LPALRREFWPAV GSW+VS FCPLQF TFRYLPLEFRVLSVN CDIAWTSV+SYFSHKA P E Sbjct: 37 FWVPRHPQVAPKMRCHGQCGTTPATAPVANASREASWGVGVSSWVAEATYFSRSALHASTPEG--IGAWWNGXXXXXXXXXXXXXXNGTDGXXXXXXAM-GEGDDGKRASDMNACSTQHRDRGEGASPTVEMSGGASKKSARFGPWVWLSAMWGMYAAWLRRSPLVAKAVTSGVLGLSGDMAAQFFEFQQKAESGRRGPFLKNTRRLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAALHVVIDTFVFDPMFVASFFCVTGMLESRSLRKSILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHKAVPTE 375
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Match: A0A7S3XMM5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMM5_HETAK) HSP 1 Score: 184 bits (466), Expect = 1.940e-52 Identity = 93/191 (48.69%), Postives = 126/191 (65.97%), Query Frame = 1 Query: 433 LYAVWLRRSPLVTKALTSGALALGGDMAAQFFEFRQQAVSSRKG----PFLKDTRRLLAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAASHLLIDTFVFDPMFVASFFCVTGILESRSLKQDVLPALRREFWPAVHGSWVVSFCFCPLQFITFRYLPLEFRVLSVNVCDIAWTSVLSYFSHKAAPE 993 LY+ L+ +P++TKAL++ +A GD A Q +E ++ +S +G F+ D RR LAV +D I ITGP LH Y LLE L+PT GG +PA H+ DTF+ DP+FV +FF TG+ E R L D LP LRREF A+ GSW VS P+QF +FRY+P+ +RVL VN D+AWT+ +S+FSHK + E Sbjct: 23 LYSSMLKNAPMLTKALSAAGIAASGDFATQIWEHWRE--TSNQGILVDKFILDRRRQLAVMMDGIFITGPILHLAYELLEHLVPTEGGGALPAVLHVAADTFLLDPLFVCTFFLTTGLFERRPLWADTLPRLRREFPAALRGSWSVSAVCLPVQFASFRYVPVRYRVLLVNCIDLAWTATMSFFSHKESAE 211
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Match: W7TTT3_9STRA (Mpv17/PMP22 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTT3_9STRA) HSP 1 Score: 183 bits (464), Expect = 2.050e-50 Identity = 88/191 (46.07%), Postives = 126/191 (65.97%), Query Frame = 1 Query: 421 AMWGLYAVWLRRSPLVTKALTSGALALGGDMAAQFFEF----RQQAVSSRKGPFLKDTRRLLAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAASHLLIDTFVFDPMFVASFFCVTGILESRSLKQDVLPALRREFWPAVHGSWVVSFCFCPLQFITFRYLPLEFRVLSVNVCDIAWTSVLSYFSHK 981 ++WG YA L P++TKA+T+G +AL GD+ AQ FE+ R+ A PF + R LAV I+ ++ITGP LH LY LE +P A GF+ A +H+ +D F+FDP+FV FF + G++E + L +D+ P ++RE+W A+ G W VS F PL+F TFR LPL RVL VN+ D+ WT+V+S+F H+ Sbjct: 154 SLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLHYLYTALESWMP-AQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHR 343
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Match: A0A836CPL7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPL7_9STRA) HSP 1 Score: 175 bits (444), Expect = 7.000e-50 Identity = 80/125 (64.00%), Postives = 100/125 (80.00%), Query Frame = 1 Query: 622 TGPALHALYGLLECLIPTAAGGFVPAASHLLIDTFVFDPMFVASFFCVTGILESRSLKQDVLPALRREFWPAVHGSWVVSFCFCPLQFITFRYLPLEFRVLSVNVCDIAWTSVLSYFSHKAAPEE 996 TGP LH LYGLLE IPT AGG +PAA H+L+DTF+FDP+FV +FF T + E +S+K++V+P L RE+WPAV GSW VS F PLQ+ FRYLPL+ RVLS+NVCD+AWT+VLS+FSHK P+E Sbjct: 1 TGPGLHYLYGLLESHIPTTAGGLIPAALHVLLDTFLFDPVFVGTFFLTTALFEGKSMKREVVPQLEREYWPAVVGSWGVSVLFWPLQWACFRYLPLQLRVLSINVCDVAWTAVLSFFSHK--PDE 123
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Match: A0A836CK90_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK90_9STRA) HSP 1 Score: 175 bits (443), Expect = 2.030e-49 Identity = 78/128 (60.94%), Postives = 99/128 (77.34%), Query Frame = 1 Query: 604 IDSILITGPALHALYGLLECLIPTAAGGFVPAASHLLIDTFVFDPMFVASFFCVTGILESRSLKQDVLPALRREFWPAVHGSWVVSFCFCPLQFITFRYLPLEFRVLSVNVCDIAWTSVLSYFSHKAA 987 ID + ITGP LH LYGLLE IPT AGG +PAA+H+L+DTF+FDP+FV SFF T + E RSL++DV P L RE+WPA+ GSW VS F P+Q+ FRYLPL+ RV S+N+CD+AWT+ LSY SH+ + Sbjct: 2 IDGVCITGPGLHFLYGLLESHIPTTAGGALPAAAHVLLDTFLFDPVFVCSFFFTTALFEGRSLRRDVAPRLAREYWPALRGSWGVSVLFWPVQWAAFRYLPLQLRVASINLCDVAWTAALSYASHRGS 129
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Match: A0A6U1B1H0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1B1H0_9STRA) HSP 1 Score: 145 bits (365), Expect = 5.030e-37 Identity = 75/183 (40.98%), Postives = 112/183 (61.20%), Query Frame = 1 Query: 430 GLYAVWLRRSPLVTKALTSGALALGGDMAAQFFEFRQQAVSSRKGPFLKDTRRLLAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAASHLLIDTFVFDPMFVASFFCVTGILESRSLKQDVLPALRREFWPAVHGSWVVSFCFCPLQFITFRYLPLEFRVLSVNVCDIAWTSVLSYFSH 978 G Y L +P+ TKA+++G + GDM AQ E R+ + PF D R A +D +L+TGP+LH Y LLE +IP+ G + +D +FDP+ +A+FFC T ++E ++D++ LR ++W G + VSF P+QFI+FRY+P++ RVL VN+CD+AWTSV+S SH Sbjct: 69 GWYLALLSSAPIRTKAVSTGCIECLGDMIAQTAEARRTGL-----PF--DRVRSFACFVDGLLVTGPSLHYGYALLERVIPSVGGPVWATLIQITVDELIFDPIDIATFFCTTSLIE----RKDLVQRLRNDYWSTFWGGFGVSFACTPIQFISFRYMPVKTRVLVVNLCDLAWTSVVSVLSH 240
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Match: A0A7S2M641_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M641_9STRA) HSP 1 Score: 133 bits (335), Expect = 1.790e-32 Identity = 77/205 (37.56%), Postives = 111/205 (54.15%), Query Frame = 1 Query: 418 SAMWGLYAVWLRRSPLVTKALTSGALALGGDMAAQFFEFR--QQAVSSRKGPFLK-----------DTRRLLAVAIDSILITGPALHALYGLLECLIPTAAGGF-----VPAASHLLIDTFVFDPMFVASFFCVTGILESRSLKQDVLPALRREFWPAVHGSWVVSFCFCPLQFITFRYLPLEFRVLSVNVCDIAWTSVLSYFSH 978 SA + Y L +PL+TK +T G +A GD AQFFE++ Q S G K + RR +A ++ +LI+ P +H Y L E ++PT GG + A +H+L D + D +FV + TG+LE +Q V+P LRR + P + S + PLQF++FR+LPL RVLSVN D+ WT V+S+ SH Sbjct: 72 SAFFAWYLSALDATPLLTKCVTGGLIAFVGDYGAQFFEWKSKQAPKESYNGSTTKQRSTISIHGTYNIRRGIARFLECLLISSPLMHYGYDLFETVVPTVGGGSALYRSIAALTHVLADCVLLDAIFVMTGIVFTGLLEGHRFRQQVIPNLRRVYLPTLKASVMTCGLLAPLQFLSFRFLPLSLRVLSVNAVDLIWTGVISFVSH 276
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Match: A0A1Z5JHC7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHC7_FISSO) HSP 1 Score: 127 bits (320), Expect = 3.370e-30 Identity = 72/195 (36.92%), Postives = 109/195 (55.90%), Query Frame = 1 Query: 415 LSAMWGLYAVWLRRSPLVTKALTSGALALGGDMAAQFFEFRQQAVSSRKGPFLKDTRRLLAVAIDSILITGPALHALYGLLECLIPTAAG-GFVPAASHLLIDTFVFDPMFVASFFCVTGILESRSLKQDVLPALRREFWPAVHGSWVVSFCFCPLQFITFRYLPLEFRVLSVNVCDIAWTSVLSYFSHKAAPEE 996 L A+ Y +WL PL+TK++TS + GD AQ +E S R+G LA ++ +L +GP +H Y L E ++P GF A H+L+D+ + D +FV S F +TG+LE S KQ + +R+ + SW+ S P++ + FRYLP+ +RVL+VNV DI W +V+S+ SHK +E Sbjct: 83 LGALLQTYTLWLTTQPLLTKSITSAVMGCVGDAVAQRWE-HHPIYSKRRG---------LAAMVEGLLWSGPLMHRAYSLFEHILPVGNNMGF--ALIHVLLDSLLLDSVFVTSAFWITGLLEGFSFKQ-LRQQYQRDIGGTLKASWLTSLFLLPVEVVCFRYLPVTYRVLAVNVLDIVWDTVISFMSHKTRGKE 264
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Match: A0A7S3LFT8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LFT8_9STRA) HSP 1 Score: 126 bits (316), Expect = 8.750e-29 Identity = 77/221 (34.84%), Postives = 116/221 (52.49%), Query Frame = 1 Query: 406 WVWLSAMWGL--------------YAVWLRRSPLVTKALTSGALALGGDMAAQFFE-FRQQAVSSRKGPFLK-DTRRLLAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAASHLLIDTFVFDPMFVASFFCVTGILESRSLKQDVLPALRREFWPAVHGSWVVSFCFCPLQFITFRYLPLEFRVLSVNVCDIAWTSVLSYFSHKAAPEEAVRADDKH 1020 WVW SA L Y + L +PLVTK +T+G + GD AQ E F Q ++ K D RR L+ + I+GP +H Y L + ++P G A H+L D+ D +FVA+ + VTG +E +Q V+P LR+++ P + SW S P++F+ FR+LPL +RVL+VN D+ W V+S+ +H++ R D+KH Sbjct: 155 WVWQSAAPNLLPLISQGLHASMAWYMMQLSVNPLVTKGITAGVIGSLGDFLAQSLENFLHQRKNNAPVVHSKYDPRRGLSTLLYGFFISGPLMHFAYDLFDRVLPIHGNG--AALVHVLADSIFLDAIFVAATYIVTGRMEGYKFRQ-VMPQLRKDYLPTLKASWATSIFLMPVEFVCFRFLPLNYRVLAVNFIDLIWDGVISFMAHRS------RQDNKH 366 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5120.13187.1 >prot_L-elsbetiae_contig5120.13187.1 ID=prot_L-elsbetiae_contig5120.13187.1|Name=mRNA_L-elsbetiae_contig5120.13187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=374bp MRCQEEPSRRRARGTADRGSWRAGLSSWVAGATSFSRSSLYASVPAGIGIback to top mRNA from alignment at L-elsbetiae_contig5120:8763..11399- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5120.13187.1 ID=mRNA_L-elsbetiae_contig5120.13187.1|Name=mRNA_L-elsbetiae_contig5120.13187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2637bp|location=Sequence derived from alignment at L-elsbetiae_contig5120:8763..11399- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5120:8763..11399- >mRNA_L-elsbetiae_contig5120.13187.1 ID=mRNA_L-elsbetiae_contig5120.13187.1|Name=mRNA_L-elsbetiae_contig5120.13187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2244bp|location=Sequence derived from alignment at L-elsbetiae_contig5120:8763..11399- (Laminarionema elsbetiae ELsaHSoW15)back to top |