mRNA_L-elsbetiae_contig5120.13187.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5120.13187.1
Unique NamemRNA_L-elsbetiae_contig5120.13187.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Match: D8LRI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRI6_ECTSI)

HSP 1 Score: 408 bits (1049), Expect = 8.070e-138
Identity = 225/346 (65.03%), Postives = 254/346 (73.41%), Query Frame = 1
Query:    1 FFAHRRSQASPTMRCQEEPSRRRARGTAD----RGSWRAGLSSWVAGATSFSRSSLYASVPAGIGIGAWWDGXXXXXXXXXN-----GTDAGVPAGDAMDGEGDSDEATGAY---VCSSXXXXXXXXXXXXXXXAFLAPKESRPFAPWVWLSAMWGLYAVWLRRSPLVTKALTSGALALGGDMAAQFFEFRQQAVSSRKGPFLKDTRRLLAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAASHLLIDTFVFDPMFVASFFCVTGILESRSLKQDVLPALRREFWPAVHGSWVVSFCFCPLQFITFRYLPLEFRVLSVNVCDIAWTSVLSYFSHKAAPEEAV 1002
            F+  R +Q +P MRCQ E    RA   A     + SW  G+SSWVAGATSFSRS+++AS P G  +GAWW+G XXXXXXXX      GTD       AM   G+ D+A GA     CS+               +   PK+S  F PWVWLSAMWG+YA WLRRSPLV KA+TSG L L GDMAAQFFEF+Q+A S R+GPFLK+ RRL AVAIDSILITGPALHALYGLLECLIPT  GGFVPAA H++IDTFVFDPMFVASFFCVTG+LESR L++ +LPALRREFWPAV GSW+VS  FCPLQF TFRYLPLEFRVLSVN CDIAWTSV+SYFSHKA P E V
Sbjct:   37 FWVPRHAQVAPKMRCQGECGTTRAATAAANASRQASWGVGVSSWVAGATSFSRSAIHASTPEG--VGAWWNGSXXXXXXXXXXXXXXGTDGXXXXXGAM---GEGDDAKGASDMNACSTQHRDRGERASSTVDMSGGEPKKSASFGPWVWLSAMWGMYAAWLRRSPLVAKAVTSGVLGLSGDMAAQFFEFQQKAESGRRGPFLKNNRRLTAVAIDSILITGPALHALYGLLECLIPTVGGGFVPAALHVVIDTFVFDPMFVASFFCVTGMLESRPLRKSILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHKAVPAEGV 377          
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Match: A0A6H5JK43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK43_9PHAE)

HSP 1 Score: 406 bits (1043), Expect = 8.600e-137
Identity = 226/342 (66.08%), Postives = 254/342 (74.27%), Query Frame = 1
Query:    1 FFAHRRSQASPTMRCQEE----PSRRRARGTADRGSWRAGLSSWVAGATSFSRSSLYASVPAGIGIGAWWDGXXXXXXXXX-----NGTDAGVPAGDAMDGEGDSDE-ATGAYVCSSXXXXXXXXXXXXXXXAFLAPKESRPFAPWVWLSAMWGLYAVWLRRSPLVTKALTSGALALGGDMAAQFFEFRQQAVSSRKGPFLKDTRRLLAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAASHLLIDTFVFDPMFVASFFCVTGILESRSLKQDVLPALRREFWPAVHGSWVVSFCFCPLQFITFRYLPLEFRVLSVNVCDIAWTSVLSYFSHKAAPEE 996
            F+  R  Q +P MRC  +    P+       +   SW  G+SSWVA AT FSRS+L+AS P G  IGAWW+GXXXXXXXXX     NGTD       AM GEGD  + A+    CS+               +  A K+S  F PWVWLSAMWG+YA WLRRSPLV KA+TSG L L GDMAAQFFEF+Q+A S R+GPFLK+TRRL AVAIDSILITGPALHALYGLLECLIPTAAGGFVPAA H++IDTFVFDPMFVASFFCVTG+LESRSL++ +LPALRREFWPAV GSW+VS  FCPLQF TFRYLPLEFRVLSVN CDIAWTSV+SYFSHKA P E
Sbjct:   37 FWVPRHPQVAPKMRCHGQCGTTPATAPVANASREASWGVGVSSWVAEATYFSRSALHASTPEG--IGAWWNGXXXXXXXXXXXXXXNGTDGXXXXXXAM-GEGDDGKRASDMNACSTQHRDRGEGASPTVEMSGGASKKSARFGPWVWLSAMWGMYAAWLRRSPLVAKAVTSGVLGLSGDMAAQFFEFQQKAESGRRGPFLKNTRRLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAALHVVIDTFVFDPMFVASFFCVTGMLESRSLRKSILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHKAVPTE 375          
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Match: A0A7S3XMM5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMM5_HETAK)

HSP 1 Score: 184 bits (466), Expect = 1.940e-52
Identity = 93/191 (48.69%), Postives = 126/191 (65.97%), Query Frame = 1
Query:  433 LYAVWLRRSPLVTKALTSGALALGGDMAAQFFEFRQQAVSSRKG----PFLKDTRRLLAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAASHLLIDTFVFDPMFVASFFCVTGILESRSLKQDVLPALRREFWPAVHGSWVVSFCFCPLQFITFRYLPLEFRVLSVNVCDIAWTSVLSYFSHKAAPE 993
            LY+  L+ +P++TKAL++  +A  GD A Q +E  ++  +S +G     F+ D RR LAV +D I ITGP LH  Y LLE L+PT  GG +PA  H+  DTF+ DP+FV +FF  TG+ E R L  D LP LRREF  A+ GSW VS    P+QF +FRY+P+ +RVL VN  D+AWT+ +S+FSHK + E
Sbjct:   23 LYSSMLKNAPMLTKALSAAGIAASGDFATQIWEHWRE--TSNQGILVDKFILDRRRQLAVMMDGIFITGPILHLAYELLEHLVPTEGGGALPAVLHVAADTFLLDPLFVCTFFLTTGLFERRPLWADTLPRLRREFPAALRGSWSVSAVCLPVQFASFRYVPVRYRVLLVNCIDLAWTATMSFFSHKESAE 211          
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Match: W7TTT3_9STRA (Mpv17/PMP22 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTT3_9STRA)

HSP 1 Score: 183 bits (464), Expect = 2.050e-50
Identity = 88/191 (46.07%), Postives = 126/191 (65.97%), Query Frame = 1
Query:  421 AMWGLYAVWLRRSPLVTKALTSGALALGGDMAAQFFEF----RQQAVSSRKGPFLKDTRRLLAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAASHLLIDTFVFDPMFVASFFCVTGILESRSLKQDVLPALRREFWPAVHGSWVVSFCFCPLQFITFRYLPLEFRVLSVNVCDIAWTSVLSYFSHK 981
            ++WG YA  L   P++TKA+T+G +AL GD+ AQ FE+    R+ A      PF  +  R LAV I+ ++ITGP LH LY  LE  +P A  GF+ A +H+ +D F+FDP+FV  FF + G++E + L +D+ P ++RE+W A+ G W VS  F PL+F TFR LPL  RVL VN+ D+ WT+V+S+F H+
Sbjct:  154 SLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLHYLYTALESWMP-AQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHR 343          
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Match: A0A836CPL7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPL7_9STRA)

HSP 1 Score: 175 bits (444), Expect = 7.000e-50
Identity = 80/125 (64.00%), Postives = 100/125 (80.00%), Query Frame = 1
Query:  622 TGPALHALYGLLECLIPTAAGGFVPAASHLLIDTFVFDPMFVASFFCVTGILESRSLKQDVLPALRREFWPAVHGSWVVSFCFCPLQFITFRYLPLEFRVLSVNVCDIAWTSVLSYFSHKAAPEE 996
            TGP LH LYGLLE  IPT AGG +PAA H+L+DTF+FDP+FV +FF  T + E +S+K++V+P L RE+WPAV GSW VS  F PLQ+  FRYLPL+ RVLS+NVCD+AWT+VLS+FSHK  P+E
Sbjct:    1 TGPGLHYLYGLLESHIPTTAGGLIPAALHVLLDTFLFDPVFVGTFFLTTALFEGKSMKREVVPQLEREYWPAVVGSWGVSVLFWPLQWACFRYLPLQLRVLSINVCDVAWTAVLSFFSHK--PDE 123          
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Match: A0A836CK90_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK90_9STRA)

HSP 1 Score: 175 bits (443), Expect = 2.030e-49
Identity = 78/128 (60.94%), Postives = 99/128 (77.34%), Query Frame = 1
Query:  604 IDSILITGPALHALYGLLECLIPTAAGGFVPAASHLLIDTFVFDPMFVASFFCVTGILESRSLKQDVLPALRREFWPAVHGSWVVSFCFCPLQFITFRYLPLEFRVLSVNVCDIAWTSVLSYFSHKAA 987
            ID + ITGP LH LYGLLE  IPT AGG +PAA+H+L+DTF+FDP+FV SFF  T + E RSL++DV P L RE+WPA+ GSW VS  F P+Q+  FRYLPL+ RV S+N+CD+AWT+ LSY SH+ +
Sbjct:    2 IDGVCITGPGLHFLYGLLESHIPTTAGGALPAAAHVLLDTFLFDPVFVCSFFFTTALFEGRSLRRDVAPRLAREYWPALRGSWGVSVLFWPVQWAAFRYLPLQLRVASINLCDVAWTAALSYASHRGS 129          
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Match: A0A6U1B1H0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1B1H0_9STRA)

HSP 1 Score: 145 bits (365), Expect = 5.030e-37
Identity = 75/183 (40.98%), Postives = 112/183 (61.20%), Query Frame = 1
Query:  430 GLYAVWLRRSPLVTKALTSGALALGGDMAAQFFEFRQQAVSSRKGPFLKDTRRLLAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAASHLLIDTFVFDPMFVASFFCVTGILESRSLKQDVLPALRREFWPAVHGSWVVSFCFCPLQFITFRYLPLEFRVLSVNVCDIAWTSVLSYFSH 978
            G Y   L  +P+ TKA+++G +   GDM AQ  E R+  +     PF  D  R  A  +D +L+TGP+LH  Y LLE +IP+  G        + +D  +FDP+ +A+FFC T ++E    ++D++  LR ++W    G + VSF   P+QFI+FRY+P++ RVL VN+CD+AWTSV+S  SH
Sbjct:   69 GWYLALLSSAPIRTKAVSTGCIECLGDMIAQTAEARRTGL-----PF--DRVRSFACFVDGLLVTGPSLHYGYALLERVIPSVGGPVWATLIQITVDELIFDPIDIATFFCTTSLIE----RKDLVQRLRNDYWSTFWGGFGVSFACTPIQFISFRYMPVKTRVLVVNLCDLAWTSVVSVLSH 240          
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Match: A0A7S2M641_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M641_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.790e-32
Identity = 77/205 (37.56%), Postives = 111/205 (54.15%), Query Frame = 1
Query:  418 SAMWGLYAVWLRRSPLVTKALTSGALALGGDMAAQFFEFR--QQAVSSRKGPFLK-----------DTRRLLAVAIDSILITGPALHALYGLLECLIPTAAGGF-----VPAASHLLIDTFVFDPMFVASFFCVTGILESRSLKQDVLPALRREFWPAVHGSWVVSFCFCPLQFITFRYLPLEFRVLSVNVCDIAWTSVLSYFSH 978
            SA +  Y   L  +PL+TK +T G +A  GD  AQFFE++  Q    S  G   K           + RR +A  ++ +LI+ P +H  Y L E ++PT  GG      + A +H+L D  + D +FV +    TG+LE    +Q V+P LRR + P +  S +      PLQF++FR+LPL  RVLSVN  D+ WT V+S+ SH
Sbjct:   72 SAFFAWYLSALDATPLLTKCVTGGLIAFVGDYGAQFFEWKSKQAPKESYNGSTTKQRSTISIHGTYNIRRGIARFLECLLISSPLMHYGYDLFETVVPTVGGGSALYRSIAALTHVLADCVLLDAIFVMTGIVFTGLLEGHRFRQQVIPNLRRVYLPTLKASVMTCGLLAPLQFLSFRFLPLSLRVLSVNAVDLIWTGVISFVSH 276          
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Match: A0A1Z5JHC7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHC7_FISSO)

HSP 1 Score: 127 bits (320), Expect = 3.370e-30
Identity = 72/195 (36.92%), Postives = 109/195 (55.90%), Query Frame = 1
Query:  415 LSAMWGLYAVWLRRSPLVTKALTSGALALGGDMAAQFFEFRQQAVSSRKGPFLKDTRRLLAVAIDSILITGPALHALYGLLECLIPTAAG-GFVPAASHLLIDTFVFDPMFVASFFCVTGILESRSLKQDVLPALRREFWPAVHGSWVVSFCFCPLQFITFRYLPLEFRVLSVNVCDIAWTSVLSYFSHKAAPEE 996
            L A+   Y +WL   PL+TK++TS  +   GD  AQ +E      S R+G         LA  ++ +L +GP +H  Y L E ++P     GF  A  H+L+D+ + D +FV S F +TG+LE  S KQ +    +R+    +  SW+ S    P++ + FRYLP+ +RVL+VNV DI W +V+S+ SHK   +E
Sbjct:   83 LGALLQTYTLWLTTQPLLTKSITSAVMGCVGDAVAQRWE-HHPIYSKRRG---------LAAMVEGLLWSGPLMHRAYSLFEHILPVGNNMGF--ALIHVLLDSLLLDSVFVTSAFWITGLLEGFSFKQ-LRQQYQRDIGGTLKASWLTSLFLLPVEVVCFRYLPVTYRVLAVNVLDIVWDTVISFMSHKTRGKE 264          
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Match: A0A7S3LFT8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LFT8_9STRA)

HSP 1 Score: 126 bits (316), Expect = 8.750e-29
Identity = 77/221 (34.84%), Postives = 116/221 (52.49%), Query Frame = 1
Query:  406 WVWLSAMWGL--------------YAVWLRRSPLVTKALTSGALALGGDMAAQFFE-FRQQAVSSRKGPFLK-DTRRLLAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAASHLLIDTFVFDPMFVASFFCVTGILESRSLKQDVLPALRREFWPAVHGSWVVSFCFCPLQFITFRYLPLEFRVLSVNVCDIAWTSVLSYFSHKAAPEEAVRADDKH 1020
            WVW SA   L              Y + L  +PLVTK +T+G +   GD  AQ  E F  Q  ++      K D RR L+  +    I+GP +H  Y L + ++P    G   A  H+L D+   D +FVA+ + VTG +E    +Q V+P LR+++ P +  SW  S    P++F+ FR+LPL +RVL+VN  D+ W  V+S+ +H++      R D+KH
Sbjct:  155 WVWQSAAPNLLPLISQGLHASMAWYMMQLSVNPLVTKGITAGVIGSLGDFLAQSLENFLHQRKNNAPVVHSKYDPRRGLSTLLYGFFISGPLMHFAYDLFDRVLPIHGNG--AALVHVLADSIFLDAIFVAATYIVTGRMEGYKFRQ-VMPQLRKDYLPTLKASWATSIFLMPVEFVCFRFLPLNYRVLAVNFIDLIWDGVISFMAHRS------RQDNKH 366          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5120.13187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRI6_ECTSI8.070e-13865.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK43_9PHAE8.600e-13766.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XMM5_HETAK1.940e-5248.69Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TTT3_9STRA2.050e-5046.07Mpv17/PMP22 n=2 Tax=Monodopsidaceae TaxID=425072 R... [more]
A0A836CPL7_9STRA7.000e-5064.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CK90_9STRA2.030e-4960.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U1B1H0_9STRA5.030e-3740.98Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2M641_9STRA1.790e-3237.56Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A1Z5JHC7_FISSO3.370e-3036.92Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S3LFT8_9STRA8.750e-2934.84Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5120contigL-elsbetiae_contig5120:8763..11399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score402.5
Seed ortholog evalue2.1e-109
Seed eggNOG ortholog2880.D8LRI6
KEGG koko:K13348
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-18_004680.1
Exons4
Model size1273
Cds size1122
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5120.13187.1prot_L-elsbetiae_contig5120.13187.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5120 8878..11363 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816523.0970163-UTR-L-elsbetiae_contig5120:8762..88771622816523.0970163-UTR-L-elsbetiae_contig5120:8762..8877Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5120 8763..8877 -
1691683621.240414-UTR-L-elsbetiae_contig5120:8762..88771691683621.240414-UTR-L-elsbetiae_contig5120:8762..8877Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5120 8763..8877 -
1622816523.1586084-UTR-L-elsbetiae_contig5120:11363..113991622816523.1586084-UTR-L-elsbetiae_contig5120:11363..11399Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5120 11364..11399 -
1691683621.297106-UTR-L-elsbetiae_contig5120:11363..113991691683621.297106-UTR-L-elsbetiae_contig5120:11363..11399Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5120 11364..11399 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816523.1098268-CDS-L-elsbetiae_contig5120:8877..92141622816523.1098268-CDS-L-elsbetiae_contig5120:8877..9214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5120 8878..9214 -
1691683621.254448-CDS-L-elsbetiae_contig5120:8877..92141691683621.254448-CDS-L-elsbetiae_contig5120:8877..9214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5120 8878..9214 -
1622816523.1203213-CDS-L-elsbetiae_contig5120:10005..102501622816523.1203213-CDS-L-elsbetiae_contig5120:10005..10250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5120 10006..10250 -
1691683621.2698348-CDS-L-elsbetiae_contig5120:10005..102501691683621.2698348-CDS-L-elsbetiae_contig5120:10005..10250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5120 10006..10250 -
1622816523.1331367-CDS-L-elsbetiae_contig5120:10791..109981622816523.1331367-CDS-L-elsbetiae_contig5120:10791..10998Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5120 10792..10998 -
1691683621.2790492-CDS-L-elsbetiae_contig5120:10791..109981691683621.2790492-CDS-L-elsbetiae_contig5120:10791..10998Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5120 10792..10998 -
1622816523.14527-CDS-L-elsbetiae_contig5120:11030..113631622816523.14527-CDS-L-elsbetiae_contig5120:11030..11363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5120 11031..11363 -
1691683621.2878113-CDS-L-elsbetiae_contig5120:11030..113631691683621.2878113-CDS-L-elsbetiae_contig5120:11030..11363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5120 11031..11363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5120.13187.1

>prot_L-elsbetiae_contig5120.13187.1 ID=prot_L-elsbetiae_contig5120.13187.1|Name=mRNA_L-elsbetiae_contig5120.13187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=374bp
MRCQEEPSRRRARGTADRGSWRAGLSSWVAGATSFSRSSLYASVPAGIGI
GAWWDGGGSAGGGGNNGTDAGVPAGDAMDGEGDSDEATGAYVCSSSSSSS
SSGSSSAAAAAFLAPKESRPFAPWVWLSAMWGLYAVWLRRSPLVTKALTS
GALALGGDMAAQFFEFRQQAVSSRKGPFLKDTRRLLAVAIDSILITGPAL
HALYGLLECLIPTAAGGFVPAASHLLIDTFVFDPMFVASFFCVTGILESR
SLKQDVLPALRREFWPAVHGSWVVSFCFCPLQFITFRYLPLEFRVLSVNV
CDIAWTSVLSYFSHKAAPEEAVRADDKHTSSGVRVERKGTNRAGGGLLNR
GGPSGGFAKGSGRDSNRLVGARA*
back to top

mRNA from alignment at L-elsbetiae_contig5120:8763..11399-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5120.13187.1 ID=mRNA_L-elsbetiae_contig5120.13187.1|Name=mRNA_L-elsbetiae_contig5120.13187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2637bp|location=Sequence derived from alignment at L-elsbetiae_contig5120:8763..11399- (Laminarionema elsbetiae ELsaHSoW15)
TTTTTCGCGCACAGGCGGTCTCAAGCCAGCCCCACGATGCGATGCCAAGA AGAGCCCTCCAGGAGGCGGGCGAGGGGCACCGCCGACCGCGGATCATGGA GAGCAGGCCTTTCGTCGTGGGTAGCCGGGGCGACCTCCTTCTCCCGATCG TCGTTGTATGCGTCCGTCCCGGCCGGAATAGGAATAGGAGCCTGGTGGGA TGGTGGTGGCTCTGCGGGCGGCGGCGGAAATAACGGCACCGACGCAGGCG TCCCTGCCGGGGATGCGATGGACGGGGAAGGGGACAGCGACGAGGCAACG GGCGCATACGTGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAG CAGCGCGGCGGCGGCGGCAGTGATGGGTATTCTTCCGCGGCCGAGTCGAA GTTCCTTGCGCCGAAGGAGAGCCGGCCGTTCGCGCCGTGGGTGTGGCTGT CGGCGATGTGGGGCCTGTACGCAGTGTGGCTCAGGCGGTCGCCGTTGGTC ACCAAGGCGCTGACGTCGGGGGCATTGGCTCTTGGGGGGGACATGGCGGC GCAGTTTTTCGAGTTCCGACAGCAGGCGGTTAGCAGCCGAAAGGGTCCAT TCTTGAAGGTGAGAGCTGCCTCCGCGCTGTCAGTGTACCGTATTCTACGC CGTATTTTCTATATTGCTTGTAGTGGATGGTGCGCCTTGCTTGCGAACAT AAAATCGATGATGTAGGTACGCGCTGCTGTGCGGAACCGCGGTAAGCTTC TCTCGGTGCCCAAACAGGTTTTTGAGAAGGGATTTATCATGTATCACCGT GGCAGAAGAAGACTTGCTGTTCCGGTGTGTCGCGCAAGTGGAACAGACCA AGGTTGCTGCTGAAATGTCGTCGTGGATTGTGTGTTGATGGTCACGACGC GTTTTAGCGATTCAGTAAATACTCCAGCCCTGCCCGTCGAGTACTATCAA CAGCTGCTGCGTGTCTGATACTGCCGCACTTCGATAGCTATGTAGGCAGT GCCGTCTCCGGGAGGTGTCAACTTTGGACAGAACCTTGCCTGGCAAATAA TTGGTCACGAGCAATCATAATAACTGGCAAACGTTCTGCTGCCTGGTCGT TTGTGCTCGCTACCTTTGATCATATGACATCACACCTTCTGTCTCCCAGG ACACCCGCCGACTGCTCGCGGTGGCCATCGACAGCATACTGATCACAGGG CCTGCTCTCCACGCTCTTTACGGGTTGTTAGAGTGCCTCATCCCGACGGC GGCGGGAGGCTTCGTGCCCGCCGCGTCGCATCTTCTCATAGACACCTTTG TCTTCGACCCGATGTTCGTGGCCTCGTTTTTCTGTGTCACCGGCATCCTG GAGAGTCGGTCTCTCAAGCAAGATGTCCTGCCGGCCTTGCGGAGGTGAGA TGGACAGATTTCAACGGTACATCGGCTAACTTGTTGACAAGTATTGTTAG GGTTATGAGAATGCATCTGTCCCGGAAGCACATTACCAAAAAACTATTAT GGACTGGCATCATCACTAGAATTTGGATGGATGGTTCCTCCGCGCACCTT AGCATATGTTGCGGTTAAGGTTGTCTAGAAGAAAATATTAACCGGCGAAC ACCTACATCGTGTTAATATAATACTGGCAGAATGTTGTCGTACGGCGCAC TACATACCAGAAAATAGTTGGAATCGAATTTTTCCGAAAAACATTTTTTC ACTCATTGTTTTTCACACCATGATTTTCTTGCTGTTCACTTCGTAGCTCA AATACGACAGTACCCTACTTCACAGGAACCAGCATCTTGTGATGCAAAAA ACTCGCCAAATGGTCGACTATGGTGGTACTTGTTGGCGGGGAAAAGGGCG CAGAGTGCCAATGCCCTTTGTACGGTCCTTAGCAGGGTAGGCGTTTTGGT ATGACATATGTACGCCAATAATCGTCCGACACTGGCGGTGTTTCATTCCA TTATTTCCGCCTTCGCTGTATCGCAGACGTCACCTGGTACGATCGATCCC ATTCAGGTGTGCATCACATTCGCTGTGGTGCTTTGAACGGGGTGGACCCT TTGGAACGGCAACAAAACTTCGACGATGCCAAATTTAGTGATGAGAGTGC AAGCCTAGCAATGCTGGCGTCCTTCAACGCTCCTCCGCCCGCTGCCTTGT GCTACTCATGTATACTTGTGCCTTTTCGACAACAGAGAGTTTTGGCCAGC GGTGCACGGATCTTGGGTGGTGTCCTTTTGCTTCTGCCCTCTTCAGTTCA TCACCTTCCGGTACCTGCCCCTTGAGTTCCGGGTGCTGTCGGTCAACGTG TGCGACATCGCTTGGACGTCGGTCCTGAGCTACTTCAGCCACAAGGCGGC TCCAGAAGAAGCTGTTCGGGCCGACGACAAGCATACGTCAAGTGGGGTTA GGGTCGAAAGGAAGGGCACGAACCGTGCGGGCGGTGGTCTTTTGAATCGG GGGGGACCTTCTGGTGGTTTTGCAAAAGGGAGTGGCAGAGATAGTAATCG CCTTGTTGGAGCCAGGGCTTGATGTATCTATTGCTCCAAGATGAAGTTTA AACGAGCTGTGTTGTCGGCCCTCAAGGCTCAAAGCTAATTGCCTTGTTGT GCGTTTCGATCTGCCGCAATGCAGACAGACAAGAAGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5120:8763..11399-

>mRNA_L-elsbetiae_contig5120.13187.1 ID=mRNA_L-elsbetiae_contig5120.13187.1|Name=mRNA_L-elsbetiae_contig5120.13187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2244bp|location=Sequence derived from alignment at L-elsbetiae_contig5120:8763..11399- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGATGCCAAGAAGAGCCCTCCAGGAGGCGGGCGAGGGGCACCGCCGA
CCGCGGATCATGGAGAGCAGGCCTTTCGTCGTGGGTAGCCGGGGCGACCT
CCTTCTCCCGATCGTCGTTGTATGCGTCCGTCCCGGCCGGAATAGGAATA
GGAGCCTGGTGGGATGGTGGTGGCTCTGCGGGCGGCGGCGGAAATAACGG
CACCGACGCAGGCGTCCCTGCCGGGGATGCGATGGACGGGGAAGGGGACA
GCGACGAGGCAACGGGCGCATACGTGTGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGGCAGCAGCAGCGCGGCGGCGGCGGCAATGCGATGCCAAGAAGA
GCCCTCCAGGAGGCGGGCGAGGGGCACCGCCGACCGCGGATCATGGAGAG
CAGGCCTTTCGTCGTGGGTAGCCGGGGCGACCTCCTTCTCCCGATCGTCG
TTGTATGCGTCCGTCCCGGCCGGAATAGGAATAGGAGCCTGGTGGGATGG
TGGTGGCTCTGCGGGCGGCGGCGGAAATAACGGCACCGACGCAGGCGTCC
CTGCCGGGGATGCGATGGACGGGGAAGGGGACAGCGACGAGGCAACGGGC
GCATACGTGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAG
CGCGGCGGCGGCGGCATTCCTTGCGCCGAAGGAGAGCCGGCCGTTCGCGC
CGTGGGTGTGGCTGTCGGCGATGTGGGGCCTGTACGCAGTGTGGCTCAGG
CGGTCGCCGTTGGTCACCAAGGCGCTGACGTCGGGGGCATTGGCTCTTGG
GGGGGACATGGCGGCGCAGTTTTTCGAGTTCCGACAGCAGGCGGTTAGCA
GCCGAAAGGGTCCATTCTTGAAGTTCCTTGCGCCGAAGGAGAGCCGGCCG
TTCGCGCCGTGGGTGTGGCTGTCGGCGATGTGGGGCCTGTACGCAGTGTG
GCTCAGGCGGTCGCCGTTGGTCACCAAGGCGCTGACGTCGGGGGCATTGG
CTCTTGGGGGGGACATGGCGGCGCAGTTTTTCGAGTTCCGACAGCAGGCG
GTTAGCAGCCGAAAGGGTCCATTCTTGAAGGACACCCGCCGACTGCTCGC
GGTGGCCATCGACAGCATACTGATCACAGGGCCTGCTCTCCACGCTCTTT
ACGGGTTGTTAGAGTGCCTCATCCCGACGGCGGCGGGAGGCTTCGTGCCC
GCCGCGTCGCATCTTCTCATAGACACCTTTGTCTTCGACCCGATGTTCGT
GGCCTCGTTTTTCTGTGTCACCGGCATCCTGGAGAGTCGGTCTCTCAAGC
AAGATGTCCTGCCGGCCTTGCGGAGGACACCCGCCGACTGCTCGCGGTGG
CCATCGACAGCATACTGATCACAGGGCCTGCTCTCCACGCTCTTTACGGG
TTGTTAGAGTGCCTCATCCCGACGGCGGCGGGAGGCTTCGTGCCCGCCGC
GTCGCATCTTCTCATAGACACCTTTGTCTTCGACCCGATGTTCGTGGCCT
CGTTTTTCTGTGTCACCGGCATCCTGGAGAGTCGGTCTCTCAAGCAAGAT
GTCCTGCCGGCCTTGCGGAGAGAGTTTTGGCCAGCGGTGCACGGATCTTG
GGTGGTGTCCTTTTGCTTCTGCCCTCTTCAGTTCATCACCTTCCGGTACC
TGCCCCTTGAGTTCCGGGTGCTGTCGGTCAACGTGTGCGACATCGCTTGG
ACGTCGGTCCTGAGCTACTTCAGCCACAAGGCGGCTCCAGAAGAAGCTGT
TCGGGCCGACGACAAGCATACGTCAAGTGGGGTTAGGGTCGAAAGGAAGG
GCACGAACCGTGCGGGCGGTGGTCTTTTGAATCGGGGGGGACCTTCTGGT
GGTTTTGCAAAAGGGAGTGGCAGAGATAGTAATCGCCTTGTTGGAGCCAG
GGCTTGAAGAGTTTTGGCCAGCGGTGCACGGATCTTGGGTGGTGTCCTTT
TGCTTCTGCCCTCTTCAGTTCATCACCTTCCGGTACCTGCCCCTTGAGTT
CCGGGTGCTGTCGGTCAACGTGTGCGACATCGCTTGGACGTCGGTCCTGA
GCTACTTCAGCCACAAGGCGGCTCCAGAAGAAGCTGTTCGGGCCGACGAC
AAGCATACGTCAAGTGGGGTTAGGGTCGAAAGGAAGGGCACGAACCGTGC
GGGCGGTGGTCTTTTGAATCGGGGGGGACCTTCTGGTGGTTTTGCAAAAG
GGAGTGGCAGAGATAGTAATCGCCTTGTTGGAGCCAGGGCTTGA
back to top