mRNA_L-elsbetiae_contig51.13148.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig51.13148.1
Unique NamemRNA_L-elsbetiae_contig51.13148.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig51.13148.1 vs. uniprot
Match: D7FI32_ECTSI (T-complex protein 1 subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI32_ECTSI)

HSP 1 Score: 794 bits (2050), Expect = 3.720e-282
Identity = 404/424 (95.28%), Postives = 417/424 (98.35%), Query Frame = 1
Query:    1 QAEKLLDRGIHPVRIGEGFDRACQAAVEHLETIADAIDFSKDNTEPLVTTAMTTLSSKIINVHKQKMAKIAVDAVMAVANLDRNDVNFDMIKACVDGKPGGELGDTELIRGIVIDKEFSHAQMPKIVKDAKLCLLTCPFEPPKPKTKHKLDITSRDAYEKLFEREQKYFADMVQQCKDVGTNLVICQWGFDDEANHLLLQSQLPAVRWVGGVELELIAIATGARIVPRFSELTAEKLGKAGAVREVSFGTTKDRMLVIEDCSNSTAVTVLVRGGNKMIVEEAKRSLHDAMCVVRNLIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISSLGIDCNQAGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVIMMGNYQ 1272
            QAEKLLDRGIHPVRIGEGFDRACQ AVEHLE IADA++FS+DNTEPLVTTAMTTLSSKIINVHKQKMAKIAVDAVMAVANL+RNDVNFDMIK  VDGKPGGELGDTELI GIVIDKEFSHAQMPK+VKDAKLCLLTCPFEPPKPKTKHKLDITS+DAYEKLFEREQKYFADMVQQCKDVGTNLVICQWGFDDEANHLLLQ+QLPAVRWVGGVELELIAIATGARIVPRFSELT EKLGKAGAVREVSFGTTKDRMLVIEDCSNS+AVTVLVRGGNKMIVEEAKRSLHDAMCVVRNLIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQYAVRSFADALDD+PMALAEN+GLSPITELSAVKSRQIAEGI+SLGIDCNQ GTCDMKEQGIFETLIGKQQQLLLATQVVKMILK+DDVIMMGNY+
Sbjct:  115 QAEKLLDRGIHPVRIGEGFDRACQTAVEHLEKIADAVEFSRDNTEPLVTTAMTTLSSKIINVHKQKMAKIAVDAVMAVANLERNDVNFDMIK--VDGKPGGELGDTELIHGIVIDKEFSHAQMPKVVKDAKLCLLTCPFEPPKPKTKHKLDITSKDAYEKLFEREQKYFADMVQQCKDVGTNLVICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGARIVPRFSELTGEKLGKAGAVREVSFGTTKDRMLVIEDCSNSSAVTVLVRGGNKMIVEEAKRSLHDAMCVVRNLIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQYAVRSFADALDDVPMALAENSGLSPITELSAVKSRQIAEGITSLGIDCNQVGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKVDDVIMMGNYE 536          
BLAST of mRNA_L-elsbetiae_contig51.13148.1 vs. uniprot
Match: A0A835ZI55_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI55_9STRA)

HSP 1 Score: 675 bits (1741), Expect = 3.510e-235
Identity = 340/423 (80.38%), Postives = 378/423 (89.36%), Query Frame = 1
Query:    1 QAEKLLDRGIHPVRIGEGFDRACQAAVEHLETIADAIDFSKDNTEPLVTTAMTTLSSKIINVHKQKMAKIAVDAVMAVANLDRNDVNFDMIKACVDGKPGGELGDTELIRGIVIDKEFSHAQMPKIVKDAKLCLLTCPFEPPKPKTKHKLDITSRDAYEKLFEREQKYFADMVQQCKDVGTNLVICQWGFDDEANHLLLQSQLPAVRWVGGVELELIAIATGARIVPRFSELTAEKLGKAGAVREVSFGTTKDRMLVIEDCSNSTAVTVLVRGGNKMIVEEAKRSLHDAMCVVRNLIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISSLGIDCNQAGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVIMMGNY 1269
            QAE+LLDRGIHPVRIG+GFDRAC+ A  HL  I+D + FS ++ EPLV TAMTTLSSKIINVHK++MA+I V+AV+AVA+++R DVNFDMIK  VDGKPGGELGDTEL+RGIVIDKEFSH QMPK +KDAKLC+LTCPFEPPKPKTKHKLDITS++AYE+L EREQ+YF  MV+QCKD G NLVICQWGFDDEANHLLLQ+ LPAVRWVGGVELELIAIATG RIVPRF EL+A+KLG AG VREV+FGTTKDRMLVIE C NS AVTVLVRGGNKMIV+EAKRSLHDAMCVVRNLIKD RIVYGGGSAEI+CS+ VS  AD I GVEQYAVR+FADALDD+PMALAEN+GLSPI+ELSAVK+ Q+ +G S LGIDCNQ GT DMK Q IFETLIGKQQQLLLATQVVKMILKIDD+I MG Y
Sbjct:  122 QAERLLDRGIHPVRIGQGFDRACEIATAHLGKISDTVHFSLEDREPLVATAMTTLSSKIINVHKRQMAEICVNAVLAVADMERKDVNFDMIK--VDGKPGGELGDTELVRGIVIDKEFSHPQMPKEIKDAKLCILTCPFEPPKPKTKHKLDITSKEAYERLHEREQQYFDTMVKQCKDSGANLVICQWGFDDEANHLLLQNDLPAVRWVGGVELELIAIATGGRIVPRFQELSADKLGYAGTVREVAFGTTKDRMLVIEGCKNSNAVTVLVRGGNKMIVDEAKRSLHDAMCVVRNLIKDNRIVYGGGSAEIACSIEVSNAADAIGGVEQYAVRAFADALDDVPMALAENSGLSPISELSAVKAAQVKDGNSHLGIDCNQEGTADMKTQRIFETLIGKQQQLLLATQVVKMILKIDDIITMGQY 542          
BLAST of mRNA_L-elsbetiae_contig51.13148.1 vs. uniprot
Match: W7TKH6_9STRA (T-complex protein 1 subunit epsilon n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKH6_9STRA)

HSP 1 Score: 663 bits (1711), Expect = 9.550e-231
Identity = 325/424 (76.65%), Postives = 379/424 (89.39%), Query Frame = 1
Query:    1 QAEKLLDRGIHPVRIGEGFDRACQAAVEHLETIADAIDFSKDNTEPLVTTAMTTLSSKIINVHKQKMAKIAVDAVMAVANLDRNDVNFDMIKACVDGKPGGELGDTELIRGIVIDKEFSHAQMPKIVKDAKLCLLTCPFEPPKPKTKHKLDITSRDAYEKLFEREQKYFADMVQQCKDVGTNLVICQWGFDDEANHLLLQSQLPAVRWVGGVELELIAIATGARIVPRFSELTAEKLGKAGAVREVSFGTTKDRMLVIEDCSNSTAVTVLVRGGNKMIVEEAKRSLHDAMCVVRNLIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISSLGIDCNQAGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVIMMGNYQ 1272
            QAEKLLDRG+HPVR+ EGF++ACQ A+ HLETIAD++ F ++N EPL  TAMTTLSSKI+N+HK KMA+IAVDAV++VA+L+R DVNFDMIK  V+GKPGG L DTEL+RGIV+DKE SH QMPK +KDAK+ +LTCPFEPPKPKTKHKLDI+SR+AYE+L+EREQ+YF  MV+QCKD G NL+ICQWGFDDEANHLLLQ+QLPAVRWVGGVELELIAIATG RIVPRFSEL+ EKLG+AG VREV+FGTTK+RMLVIEDC+ S AVT+LVRGGNKMIVEEAKRSLHDAMCVVRNLIKD RIVYGGGSAEISCS+AV++ AD   GV+QYA+R+FADALDD+PMALAENAGLSPITELS VKS+QI +G   +G+DC Q+G  DM+ Q IFETLIGKQQQ  LATQ+V+M+LKIDDV+M GN+Q
Sbjct:  115 QAEKLLDRGLHPVRMAEGFEKACQLAMAHLETIADSVSFGRENIEPLYDTAMTTLSSKIVNIHKSKMARIAVDAVLSVADLERKDVNFDMIK--VEGKPGGRLEDTELVRGIVVDKEISHPQMPKTIKDAKIAILTCPFEPPKPKTKHKLDISSREAYERLYEREQEYFTTMVRQCKDSGANLIICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSELSPEKLGRAGLVREVAFGTTKERMLVIEDCAKSQAVTILVRGGNKMIVEEAKRSLHDAMCVVRNLIKDNRIVYGGGSAEISCSIAVAKAADTETGVDQYAIRAFADALDDVPMALAENAGLSPITELSQVKSQQIKDGNPHIGVDCMQSGVADMRTQRIFETLIGKQQQFQLATQLVRMVLKIDDVLMHGNFQ 536          
BLAST of mRNA_L-elsbetiae_contig51.13148.1 vs. uniprot
Match: A0A7S2SNU9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNU9_9STRA)

HSP 1 Score: 659 bits (1700), Expect = 1.090e-230
Identity = 327/423 (77.30%), Postives = 379/423 (89.60%), Query Frame = 1
Query:    1 QAEKLLDRGIHPVRIGEGFDRACQAAVEHLETIADAIDFSKDNTEPLVTTAMTTLSSKIINVHKQKMAKIAVDAVMAVANLDRNDVNFDMIKACVDGKPGGELGDTELIRGIVIDKEFSHAQMPKIVKDAKLCLLTCPFEPPKPKTKHKLDITSRDAYEKLFEREQKYFADMVQQCKDVGTNLVICQWGFDDEANHLLLQSQLPAVRWVGGVELELIAIATGARIVPRFSELTAEKLGKAGAVREVSFGTTKDRMLVIEDCSNSTAVTVLVRGGNKMIVEEAKRSLHDAMCVVRNLIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISSLGIDCNQAGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVIMMGNY 1269
            QAEKLLDRG+HPVR+ EGFD+AC  AV+ LE I+D ++F+K++T PL  TA TTLSSKIINVH+ +MAKIAVDAV+AVA+LDR+DVNFD+IK  ++GKPGG L +TEL++GIV+DK+FSH QMPK+V+DAK+C+LTCPFEPPKPKTKHKLDITSR+AYEKL+++EQ YF +MVQQCKD G NLVICQWGFDDEANHLLLQ+ LPAVRWVGGVELELIAIATG RIVPRFSEL+AEKLG+AG VREV+FGT K+RMLVIEDC+NS+AVT+LVRGGN MIVEEAKRSLHDAMCVVRNLIKD RIVYGGG+AEI+CS A+S+ AD + G EQYA+R+FADALDDIPMALAEN+G SPI++LSAVKSRQ+ E    LGIDC   GT DMKEQ +FETLIGKQQQLLLATQVVKMILKIDDVIM G Y
Sbjct:   13 QAEKLLDRGLHPVRVAEGFDQACLLAVKTLEEISDTVEFTKEDTTPLFNTASTTLSSKIINVHRDQMAKIAVDAVLAVADLDRHDVNFDLIK--MEGKPGGRLDETELVQGIVVDKDFSHPQMPKVVEDAKMCILTCPFEPPKPKTKHKLDITSREAYEKLYDQEQAYFKEMVQQCKDCGANLVICQWGFDDEANHLLLQNDLPAVRWVGGVELELIAIATGGRIVPRFSELSAEKLGRAGTVREVAFGTLKERMLVIEDCANSSAVTILVRGGNSMIVEEAKRSLHDAMCVVRNLIKDNRIVYGGGAAEIACSNAISKYADTVVGTEQYALRAFADALDDIPMALAENSGFSPISQLSAVKSRQVTEQNPHLGIDCKAKGTNDMKEQLVFETLIGKQQQLLLATQVVKMILKIDDVIMHGQY 433          
BLAST of mRNA_L-elsbetiae_contig51.13148.1 vs. uniprot
Match: A0A7S3HCP3_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCP3_9STRA)

HSP 1 Score: 659 bits (1699), Expect = 6.270e-229
Identity = 326/423 (77.07%), Postives = 380/423 (89.83%), Query Frame = 1
Query:    1 QAEKLLDRGIHPVRIGEGFDRACQAAVEHLETIADAIDFSKDNTEPLVTTAMTTLSSKIINVHKQKMAKIAVDAVMAVANLDRNDVNFDMIKACVDGKPGGELGDTELIRGIVIDKEFSHAQMPKIVKDAKLCLLTCPFEPPKPKTKHKLDITSRDAYEKLFEREQKYFADMVQQCKDVGTNLVICQWGFDDEANHLLLQSQLPAVRWVGGVELELIAIATGARIVPRFSELTAEKLGKAGAVREVSFGTTKDRMLVIEDCSNSTAVTVLVRGGNKMIVEEAKRSLHDAMCVVRNLIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISSLGIDCNQAGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVIMMGNY 1269
            QAEKLLDRG+HPVRI EGF++A + A++HL+TIAD ++F+KDNT PLV TAMTTLSSKIINV+K+KMA+IAVDAV++VA+LD NDVNFDMIK  V+GKPGG L +TELI+GIVIDKEFSH QMPK +KDAK+C+LTCPFEPPKPKTKHK+DITS++AY+KL++ EQ YF  MV+QCKD G NLVICQWGFDDEANHLLLQ+ LPAVRWVGGVELELIAIATG RIVPRFSEL+  KLG+AG VREVSFGTTK+RMLVIEDC+ S AVTVL+RGGNKMIV+EA RSLHDAMCVVRNLIKD R+VYGGGSAEI+CS+AVS  AD + G+EQYA+R+FADALDD+PMALAENAGLSPITE++++K+RQ+AEG   LG+DCNQ G+ DMK+  +FETLIGK QQL LATQVVKMILKIDDVIM G Y
Sbjct:  115 QAEKLLDRGLHPVRISEGFEQAMEVALKHLQTIADRVEFTKDNTTPLVDTAMTTLSSKIINVYKRKMAQIAVDAVLSVADLDNNDVNFDMIK--VEGKPGGRLEETELIKGIVIDKEFSHPQMPKEIKDAKMCILTCPFEPPKPKTKHKMDITSKEAYDKLYKYEQDYFTTMVKQCKDSGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVELELIAIATGGRIVPRFSELSEAKLGRAGTVREVSFGTTKERMLVIEDCACSNAVTVLIRGGNKMIVDEAHRSLHDAMCVVRNLIKDNRVVYGGGSAEIACSLAVSAFADTVPGIEQYAIRAFADALDDLPMALAENAGLSPITEVTSIKARQLAEGNPRLGVDCNQIGSNDMKDHLVFETLIGKMQQLQLATQVVKMILKIDDVIMYGGY 535          
BLAST of mRNA_L-elsbetiae_contig51.13148.1 vs. uniprot
Match: A0A7S2BNZ2_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNZ2_9STRA)

HSP 1 Score: 651 bits (1680), Expect = 4.720e-226
Identity = 327/424 (77.12%), Postives = 376/424 (88.68%), Query Frame = 1
Query:    1 QAEKLLDRGIHPVRIGEGFDRACQAAVEHLETIADAIDFSKDNTEPLVTTAMTTLSSKIINVHKQKMAKIAVDAVMAVANLDRNDVNFDMIKACVDGKPGGELGDTELIRGIVIDKEFSHAQMPKIVKDAKLCLLTCPFEPPKPKTKHKLDITSRDAYEKLFEREQKYFADMVQQCKDVGTNLVICQWGFDDEANHLLLQSQLPAVRWVGGVELELIAIATGARIVPRFSELTAEKLGKAGAVREVSFGTTKDRMLVIEDCSNSTAVTVLVRGGNKMIVEEAKRSLHDAMCVVRNLIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISSLGIDCNQAGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVIMMGNYQ 1272
            QAEKLLDRG HPVRI EGFD+AC  AV+ L  I+D ++F + NT PL+ TA TTLSSKIINVHK  MA+IAV+AV+AVA+ + +DVNFDMIK  ++GKPGG+LG+TELI+GIVIDK+FSH QMPK V DAK+C+LTCPFEPPKPKTKHKLDITS++AY+KL E+EQ+YF  MV+QCKD G NLVICQWGFDDEANHLLLQ+ LPAVRWVGGVELELIAIATG RIVPRFSELT+EKLGKAG VREV+FGT K+RMLV+EDC+NS AVTVLVRGGN MIVEEAKRSLHDAMCVVRNLIK+ RIVYGGG+AEI+CS A++  AD+  GV+QYA+R+FADAL+DIPMALAEN+GLSPIT+LSAVKSRQ+ EG   LGIDC +AGT DMK+Q +FETLIGKQQQLLLATQVVKMILKIDDVIM G YQ
Sbjct:  115 QAEKLLDRGFHPVRISEGFDQACDIAVQTLADISDVVEFDQQNTTPLLNTAKTTLSSKIINVHKDHMAEIAVEAVLAVADFEHHDVNFDMIK--MEGKPGGQLGETELIKGIVIDKDFSHPQMPKEVIDAKMCILTCPFEPPKPKTKHKLDITSKEAYDKLHEQEQEYFTQMVKQCKDSGANLVICQWGFDDEANHLLLQNDLPAVRWVGGVELELIAIATGGRIVPRFSELTSEKLGKAGRVREVAFGTLKERMLVVEDCANSNAVTVLVRGGNSMIVEEAKRSLHDAMCVVRNLIKNNRIVYGGGAAEIACSNAITAQADDKTGVDQYALRAFADALEDIPMALAENSGLSPITQLSAVKSRQVTEGNPHLGIDCKRAGTNDMKDQLVFETLIGKQQQLLLATQVVKMILKIDDVIMHGAYQ 536          
BLAST of mRNA_L-elsbetiae_contig51.13148.1 vs. uniprot
Match: A0A482RX78_9ARCH (T-complex protein 1 subunit epsilon n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX78_9ARCH)

HSP 1 Score: 642 bits (1657), Expect = 4.080e-223
Identity = 315/411 (76.64%), Postives = 367/411 (89.29%), Query Frame = 1
Query:    1 QAEKLLDRGIHPVRIGEGFDRACQAAVEHLETIADAIDFSKDNTEPLVTTAMTTLSSKIINVHKQKMAKIAVDAVMAVANLDRNDVNFDMIKACVDGKPGGELGDTELIRGIVIDKEFSHAQMPKIVKDAKLCLLTCPFEPPKPKTKHKLDITSRDAYEKLFEREQKYFADMVQQCKDVGTNLVICQWGFDDEANHLLLQSQLPAVRWVGGVELELIAIATGARIVPRFSELTAEKLGKAGAVREVSFGTTKDRMLVIEDCSNSTAVTVLVRGGNKMIVEEAKRSLHDAMCVVRNLIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISSLGIDCNQAGTCDMKEQGIFETLIGKQQQLLLATQVVKMI 1233
            QAEKLLDRG+HPVRI EGF++A + A+ HLE IAD ++FSK NTEPLV  AMTTLSSKI+N++K+KMA+IAVDAV++VA+LD NDVNFDMIK  ++GKPGG L +TELI+GIV+DKEFSH QMPK +KDAK+C+LTCPFEPPKPKTKHKLDITS++AY KL++ EQ YF  MV+QCKD G NLVICQWGFDDEANHLLLQ+QLPAVRWVGGVELELIAIATG RIVPRFSELTAEKLGKAG VREVSFGTTK+RMLVIEDC++S AVTVL+RGGNKMIVEEAKRSLHDAMCVVRNLIKD RIVYGGGSAEI+CS+ VS  AD + G+EQYA+R+FADAL+DIPMALAEN+GLSPI E+++ K+RQ++E    LG+DCNQ G  DMK+Q + ETLIGKQQQ+ LATQVVKM+
Sbjct:   71 QAEKLLDRGLHPVRISEGFEQAAEVAIRHLEKIADRVEFSKANTEPLVDIAMTTLSSKIVNIYKRKMAQIAVDAVLSVADLDNNDVNFDMIK--MEGKPGGRLEETELIKGIVVDKEFSHPQMPKTIKDAKICILTCPFEPPKPKTKHKLDITSKEAYNKLYQYEQDYFTTMVKQCKDSGANLVICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSELTAEKLGKAGTVREVSFGTTKERMLVIEDCASSNAVTVLIRGGNKMIVEEAKRSLHDAMCVVRNLIKDNRIVYGGGSAEIACSLEVSAFADTVPGIEQYAIRAFADALEDIPMALAENSGLSPIAEVTSTKARQLSENNPRLGVDCNQTGNADMKQQLVLETLIGKQQQIQLATQVVKMV 479          
BLAST of mRNA_L-elsbetiae_contig51.13148.1 vs. uniprot
Match: A0A7S2UFZ6_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UFZ6_9STRA)

HSP 1 Score: 637 bits (1642), Expect = 3.290e-220
Identity = 320/430 (74.42%), Postives = 376/430 (87.44%), Query Frame = 1
Query:    1 QAEKLLDRGIHPVRIGEGFDRACQAAVEHLETIADAIDFSKDNTEPLVTTAMTTLSSKIINVHKQKMAKIAVDAVMAVANLDRNDVNFDMIKACVDGKPGGELGDTELIRGIVIDKEFSHAQMPKIVKDAKLCLLTCPFEPPKPKTKHKLDITSRDAYEKLFEREQKYFADMVQQCKDVGTNLVICQWGFDDEANHLLLQSQLPAVRWVGGVELELIAIATGARIVPRFSELTAEKLGKAGAVREVSFGTTKDRMLVIEDCSNSTAVTVLVRGGNKMIVEEAKRSLHDAMCVVRNLIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISSLGIDCNQAG------TCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVIMMGNYQ 1272
            QAEKLLDRGIHPVR+ EG+++A + A++ LE IAD + FSKDN EPLV TAMTTL+SKIINVHK+KMA+IAV+AV+ VA++DR+DVNFDMI+  ++GK GG L DTEL+ GIVIDK+FSH QM K+VKDAK+C+LTCPFEPPKPKTKHKLDI S++AY+KL++ EQ YF +MVQQ KD G N+VICQWGFDDEANHLLLQ+ LPAVRWVGGVE+E IAIATG RIVPRFSEL+AEKLG+AG VREVSFGTTK+RMLVIEDC+NS AVTVLVRGGNKM+VEEAKRSLHDAMCVVRNLIKD R+VYGGGSAEI+CS+AVS+ A+ + GV+QYA+R+FADALDDIP+ALAENAGLSPI EL+A KSRQI EG S +G+  +Q        + DM++ G+FETLIGKQQQL LATQVVKMILKIDDVI MG YQ
Sbjct:  115 QAEKLLDRGIHPVRVAEGYEKAAEVAIKTLEEIADRVAFSKDNVEPLVATAMTTLNSKIINVHKRKMAEIAVNAVLGVADIDRHDVNFDMIR--LEGKAGGSLEDTELVNGIVIDKDFSHPQMAKVVKDAKMCILTCPFEPPKPKTKHKLDINSKEAYDKLYKYEQDYFKEMVQQVKDSGANMVICQWGFDDEANHLLLQNGLPAVRWVGGVEIEHIAIATGGRIVPRFSELSAEKLGRAGTVREVSFGTTKERMLVIEDCANSNAVTVLVRGGNKMVVEEAKRSLHDAMCVVRNLIKDNRVVYGGGSAEIACSIAVSKYAETMVGVDQYAIRAFADALDDIPLALAENAGLSPIEELAAAKSRQIREGSSVIGLGLDQVSEIDDDHSWDMRKLGVFETLIGKQQQLQLATQVVKMILKIDDVISMGQYQ 542          
BLAST of mRNA_L-elsbetiae_contig51.13148.1 vs. uniprot
Match: A0A7S2PT90_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PT90_9STRA)

HSP 1 Score: 632 bits (1631), Expect = 1.420e-218
Identity = 316/428 (73.83%), Postives = 372/428 (86.92%), Query Frame = 1
Query:    1 QAEKLLDRGIHPVRIGEGFDRACQAAVEHLETIADAIDFSKDNTEPLVTTAMTTLSSKIINVHKQKMAKIAVDAVMAVANLDRNDVNFDMIKACVDGKPGGELGDTELIRGIVIDKEFSHAQMPKIVKDAKLCLLTCPFEPPKPKTKHKLDITSRDAYEKLFEREQKYFADMVQQCKDVGTNLVICQWGFDDEANHLLLQSQLPAVRWVGGVELELIAIATGARIVPRFSELTAEKLGKAGAVREVSFGTTKDRMLVIEDCSNSTAVTVLVRGGNKMIVEEAKRSLHDAMCVVRNLIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISSLGI--DCNQA---GTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVIMMGNY 1269
            QAEKLLDRGIHPVR+ EGF++AC+ A+  L  IAD I+FSKD+ EPL+TTAMTTL+SKIINV K+KMA+IAV+AV+ VA+L+R DVNFDMI+   +GKPGG L DTEL+ G+ IDKE SH QM K +KDAK+C+LTCPFEPP+PKTKH LDITS++AYEKL+E+EQKYF DMV+Q KD G NLVICQWGFDDEANHLLLQ+ LPA+RWVGG+E+E IAIATG RIVPRFSELT EKLGKAG VREVSFGT+K++M+VIE CSNS AVTVLVRGGNKMIVEEAKRSLHDAMCVVRNLIKD RIVYGGGSAE++C +AVS+ A+ + GV+QYA+R FADALDDIP+ALAENAGLSPI E++A+KSRQ++EG   +G+  DC Q     T DM+EQG+FETL+GKQQQL LATQVVKMILKIDDVI+ G Y
Sbjct:  115 QAEKLLDRGIHPVRVAEGFEKACEVAISTLGEIADTIEFSKDDIEPLMTTAMTTLNSKIINVSKRKMAEIAVNAVLCVADLERKDVNFDMIRT--EGKPGGCLEDTELVNGLAIDKEISHPQMAKEIKDAKICILTCPFEPPRPKTKHHLDITSKEAYEKLYEQEQKYFTDMVKQVKDSGANLVICQWGFDDEANHLLLQNDLPAIRWVGGIEIEHIAIATGGRIVPRFSELTPEKLGKAGLVREVSFGTSKEKMIVIEGCSNSNAVTVLVRGGNKMIVEEAKRSLHDAMCVVRNLIKDNRIVYGGGSAEVACGIAVSKYAESVVGVDQYAIRGFADALDDIPLALAENAGLSPIEEVAAIKSRQLSEGNPRIGVGVDCVQTDGRSTIDMREQGVFETLVGKQQQLQLATQVVKMILKIDDVILSGQY 540          
BLAST of mRNA_L-elsbetiae_contig51.13148.1 vs. uniprot
Match: A0A6T5Q400_HETAK (T-complex protein 1 subunit epsilon n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5Q400_HETAK)

HSP 1 Score: 627 bits (1618), Expect = 1.100e-216
Identity = 312/423 (73.76%), Postives = 365/423 (86.29%), Query Frame = 1
Query:    1 QAEKLLDRGIHPVRIGEGFDRACQAAVEHLETIADAIDFSKDNTEPLVTTAMTTLSSKIINVHKQKMAKIAVDAVMAVANLDRNDVNFDMIKACVDGKPGGELGDTELIRGIVIDKEFSHAQMPKIVKDAKLCLLTCPFEPPKPKTKHKLDITSRDAYEKLFEREQKYFADMVQQCKDVGTNLVICQWGFDDEANHLLLQSQLPAVRWVGGVELELIAIATGARIVPRFSELTAEKLGKAGAVREVSFGTTKDRMLVIEDCSNSTAVTVLVRGGNKMIVEEAKRSLHDAMCVVRNLIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISSLGIDCNQAGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVIMMGNY 1269
            QAEKLL RG+HPVRI EGF+ AC  AV  L  IAD ++FS++NT+ L+ TA TTLSSKIIN+HK +MA+IAV+AV++VA+L+R+DVNFDMIK  + GKPGG L +TELI GIVIDKE+SHAQMPK V+DA++C+LTCPFEPPKPKTKHKLDITSR+AY++L  REQ+YF  MV+QCK+ G N+VICQWGFDDEANHLLLQ+QLPAVRWVGGVELELIAIATG RIVPRF EL  EKLG+AG +REV+FGTTK+RM+VIE C+ S AVT+LVRGGNKMIVEEAKRSLHDAMCV RNLIKD RIVYGG SAE++C++AV   AD + G+EQYA+R+FADALDD+PMALAEN+GL PI ELS VK+ Q+  G   LG+DCNQ GT DM+EQ IFETLIGKQQQL LATQVVKMILKIDDVIM G Y
Sbjct:  115 QAEKLLQRGLHPVRIAEGFELACGVAVARLAQIADRVEFSRENTDILMNTAKTTLSSKIINIHKDRMARIAVEAVLSVADLERHDVNFDMIK--MTGKPGGRLEETELIHGIVIDKEWSHAQMPKEVRDARMCILTCPFEPPKPKTKHKLDITSREAYDRLHAREQEYFGTMVRQCKESGANVVICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFGELAPEKLGRAGLIREVAFGTTKERMMVIEQCAQSNAVTILVRGGNKMIVEEAKRSLHDAMCVTRNLIKDNRIVYGGASAEVACALAVGAHADRVLGMEQYAIRAFADALDDVPMALAENSGLQPIEELSRVKAAQVETGNPYLGVDCNQTGTNDMREQQIFETLIGKQQQLQLATQVVKMILKIDDVIMYGAY 535          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig51.13148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI32_ECTSI3.720e-28295.28T-complex protein 1 subunit epsilon n=2 Tax=Ectoca... [more]
A0A835ZI55_9STRA3.510e-23580.38T-complex protein 1 subunit epsilon n=1 Tax=Tribon... [more]
W7TKH6_9STRA9.550e-23176.65T-complex protein 1 subunit epsilon n=2 Tax=Monodo... [more]
A0A7S2SNU9_9STRA1.090e-23077.30Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3HCP3_9STRA6.270e-22977.07T-complex protein 1 subunit epsilon n=1 Tax=Spumel... [more]
A0A7S2BNZ2_9STRA4.720e-22677.12T-complex protein 1 subunit epsilon n=1 Tax=Floren... [more]
A0A482RX78_9ARCH4.080e-22376.64T-complex protein 1 subunit epsilon n=1 Tax=archae... [more]
A0A7S2UFZ6_9STRA3.290e-22074.42T-complex protein 1 subunit epsilon n=1 Tax=Atthey... [more]
A0A7S2PT90_9STRA1.420e-21873.83T-complex protein 1 subunit epsilon n=1 Tax=Leptoc... [more]
A0A6T5Q400_HETAK1.100e-21673.76T-complex protein 1 subunit epsilon n=1 Tax=Hetero... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig51contigL-elsbetiae_contig51:58096..67397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score701.4
Seed ortholog evalue2.2e-199
Seed eggNOG ortholog2880.D7FI32
Preferred nameCCT5
KEGG koko:K09497
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005832,GO:0005886,GO:0005911,GO:0006457,GO:0006458,GO:0008150,GO:0009506,GO:0009987,GO:0016020,GO:0030054,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0055044,GO:0061077,GO:0071944,GO:0101031
EggNOG free text desc.unfolded protein binding
EggNOG OGsCOG0459@1,KOG0357@2759
Ec32 ortholog descriptionT-complex protein, epsilon subunit
Ec32 orthologEc-10_003320.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110,ko04147
Exons9
Model size2242
Cds size1122
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816519.1260674-UTR-L-elsbetiae_contig51:58095..590621622816519.1260674-UTR-L-elsbetiae_contig51:58095..59062Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig51 58096..59062 -
1691683618.243902-UTR-L-elsbetiae_contig51:58095..590621691683618.243902-UTR-L-elsbetiae_contig51:58095..59062Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig51 58096..59062 -
1622816519.2364664-UTR-L-elsbetiae_contig51:66374..663921622816519.2364664-UTR-L-elsbetiae_contig51:66374..66392Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig51 66375..66392 -
1691683618.3446486-UTR-L-elsbetiae_contig51:66374..663921691683618.3446486-UTR-L-elsbetiae_contig51:66374..66392Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig51 66375..66392 -
1622816519.2476714-UTR-L-elsbetiae_contig51:67262..673971622816519.2476714-UTR-L-elsbetiae_contig51:67262..67397Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig51 67263..67397 -
1691683618.3538282-UTR-L-elsbetiae_contig51:67262..673971691683618.3538282-UTR-L-elsbetiae_contig51:67262..67397Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig51 67263..67397 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816519.1379728-CDS-L-elsbetiae_contig51:59062..592001622816519.1379728-CDS-L-elsbetiae_contig51:59062..59200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 59063..59200 -
1691683618.2546237-CDS-L-elsbetiae_contig51:59062..592001691683618.2546237-CDS-L-elsbetiae_contig51:59062..59200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 59063..59200 -
1622816519.1492233-CDS-L-elsbetiae_contig51:60070..602201622816519.1492233-CDS-L-elsbetiae_contig51:60070..60220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 60071..60220 -
1691683618.2687736-CDS-L-elsbetiae_contig51:60070..602201691683618.2687736-CDS-L-elsbetiae_contig51:60070..60220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 60071..60220 -
1622816519.1602502-CDS-L-elsbetiae_contig51:61145..613041622816519.1602502-CDS-L-elsbetiae_contig51:61145..61304Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 61146..61304 -
1691683618.2783449-CDS-L-elsbetiae_contig51:61145..613041691683618.2783449-CDS-L-elsbetiae_contig51:61145..61304Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 61146..61304 -
1622816519.17753-CDS-L-elsbetiae_contig51:61831..619701622816519.17753-CDS-L-elsbetiae_contig51:61831..61970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 61832..61970 -
1691683618.2866642-CDS-L-elsbetiae_contig51:61831..619701691683618.2866642-CDS-L-elsbetiae_contig51:61831..61970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 61832..61970 -
1622816519.1887922-CDS-L-elsbetiae_contig51:63431..635711622816519.1887922-CDS-L-elsbetiae_contig51:63431..63571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 63432..63571 -
1691683618.2958612-CDS-L-elsbetiae_contig51:63431..635711691683618.2958612-CDS-L-elsbetiae_contig51:63431..63571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 63432..63571 -
1622816519.2001352-CDS-L-elsbetiae_contig51:64504..646871622816519.2001352-CDS-L-elsbetiae_contig51:64504..64687Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 64505..64687 -
1691683618.305771-CDS-L-elsbetiae_contig51:64504..646871691683618.305771-CDS-L-elsbetiae_contig51:64504..64687Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 64505..64687 -
1622816519.2141483-CDS-L-elsbetiae_contig51:64988..650721622816519.2141483-CDS-L-elsbetiae_contig51:64988..65072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 64989..65072 -
1691683618.3170729-CDS-L-elsbetiae_contig51:64988..650721691683618.3170729-CDS-L-elsbetiae_contig51:64988..65072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 64989..65072 -
1622816519.2238731-CDS-L-elsbetiae_contig51:66245..663741622816519.2238731-CDS-L-elsbetiae_contig51:66245..66374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 66246..66374 -
1691683618.3317692-CDS-L-elsbetiae_contig51:66245..663741691683618.3317692-CDS-L-elsbetiae_contig51:66245..66374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 66246..66374 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig51.13148.1prot_L-elsbetiae_contig51.13148.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig51 59063..66374 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig51.13148.1

>prot_L-elsbetiae_contig51.13148.1 ID=prot_L-elsbetiae_contig51.13148.1|Name=mRNA_L-elsbetiae_contig51.13148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=374bp
MTTLSSKIINVHKQKMAKIAVDAVMAVANLDRNDVNFDMIKACVDGKPGG
ELGDTELIRGIVIDKEFSHAQMPKIVKDAKLCLLTCPFEPPKPKTKHKLD
ITSRDAYEKLFEREQKYFADMVQQCKDVGTNLVICQWGFDDEANHLLLQS
QLPAVRWVGGVELELIAIATGARIVPRFSELTAEKLGKAGAVREVSFGTT
KDRMLVIEDCSNSTAVTVLVRGGNKMIVEEAKRSLHDAMCVVRNLIKDKR
IVYGGGSAEISCSVAVSRMADEIKGVEQYAVRSFADALDDIPMALAENAG
LSPITELSAVKSRQIAEGISSLGIDCNQAGTCDMKEQGIFETLIGKQQQL
LLATQVVKMILKIDDVIMMGNYQ*
back to top

mRNA from alignment at L-elsbetiae_contig51:58096..67397-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig51.13148.1 ID=mRNA_L-elsbetiae_contig51.13148.1|Name=mRNA_L-elsbetiae_contig51.13148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9302bp|location=Sequence derived from alignment at L-elsbetiae_contig51:58096..67397- (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGGAGAAGCTGCTGGACAGGGGGATCCACCCCGTGCGCATAGGAGA GGGTTTCGACAGGGCCTGCCAGGCCGCGGTCGAGCACCTGGAGACAATCG CCGACGCGATCGATTTCTCCAAGGACAACACCGAGGTAAAAAATACTTCG TCCTTACATGGGAGTGTCCTTACATGGGAGTGTGTAGAGATAGTCCTTTG TGTCATCGTGATGGGATCGATGTATCTGGTCCCCTTTTCTTTTTTTTTCT TTTTTTTTCGGCTTTTTATGGGCTTTTTGCCTGTCTGTGTGGTCCGCCCG CCGCCATCGCAAGTCTCTCTCGTGCATGCCGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTTTGAGCGCGTGTGTGTGTGCGTGTGCGTGTGTGTGTGT GCGTGCGTGCGTGCGTGCCCAGCTGTTGTCGGCGGAAGTTTGCTGTGTTT GTGTTGGTCCGTGACGTATGAGCTAGTCTATACATAACTACATACGCCCT CCTTGGTGATGCGGTGGAATGGAGGCCGATCTCCTCCGATGGCTGGCGAC TCCGGGATCTTGCCAGTGGCGTCACTCCCCCAGTCAGCCAGTCCGCCCGT CCGCCCGTCCGCCCGTTTGATTCATCTTCTCTTCTTCTTCGTTGTTGTTG TCTTTGCGGTGCCCCCCCCTGGTGGGTGCCGCTTTTATTGGCTCCTTTCT GCGTGTTCCCGTTTTTACTTCTTCCATCTCTCGTGAGCTTCTTCCCTTAT CTTGTTTAGGTTTCTTACCCACGGTTTCCTCCTCCCACCCCCTCACCTCC CCTCCGAGAGTTGTTATCCTCCTTTGTTGTTGTTGTTGCTGTTGTTGCTG TTGTTGTCTATTGTTGTCTTGACATCAATAAAAACCGTTCCAGCCTCTAT CCGGTACCTTCCACCTGTCCGCACTAATCTTCCGTTGTCGCTCTCAATTG TCGTCGATTGTTGCCGCGTCGTGTGTGTGTGTTTTTTTTTTTTTTTTTAC CGCAGCCGCTGGTAACCACCGCGATGACTACGCTGAGCTCCAAGATCATC AACGTCCACAAGCAGAAGATGGCGAAGATCGCCGTGGACGCGGTCATGGC CGTGGCCAACCTCGACCGCAACGACGTCAACTTCGACATGATCAAGGCAT GTGTGACCGCATCGAGTCTTGGAATAATAGTACGCCCACAGGGGGAGGTG GTACACTGGGTGGAGAGATCGGAACGGCTTTTAACGTGAAAAAACAACAA CAACTATGTACACCGGCATCCAATTGAAATCAACAAGTACGAGCACGTTG CGAACGCGGCTACGAGCGTCGTGGTGGAACCAGGCACGAGAAGACCGACA ACCAGCCGCGAGCTCGGTTTTTTGTCTCTTTTGAAAGGAAAAACAGTTAC ACATGTAATCAAAAATGGAACCTGACCCACTTTCGAGACGGGACCCCCGT GAGCTCCAATCGGAGTATAGGGTCATTAGTTCTTTTTAGCTGTATAAATT ATGAAGACTATCTAGTAACAATTTTCCAACCTAAAATTGTTACTGATAAC ATAAAATTTTTAAATGGCAAAATTGTATCATGGAAAAATTCAGTCCATGT ACTGTTGTAGTGACGTATAGTATTGGGCCGACCGAGTAAAAAAAACACCT AAAATAAAACATTTTTTTCTCATTTTCTATATTATTACTCTTCCTTGGAA AAAAAACCTCCAGGATCCCGTCGGCCACCATTTCTTGTGTGTACACACAC ACATGTATCACGGGAATCGACGGCATGAAGTGCAGGATTAGTGCGGACGT ACACATGGAGGTATACTAGGGTAGAGAGTTCGGGGCGGTTTCAAGTGCTG GACAGATGGGGGTACTAGGTAGAGAGATCGGGACGGTTTCAAGTGCTGGA CAGATATTAGTACAGACAGATCGAGATACCCTGTGTAGAGAGATCGGGAG GGTTTCTATGTGTGAAGACGACGACGACAACAACAATAACCATTTGATGT GTGTACGTTTCTTTTGGCTTATTTATACTCCGCACTACTGGTGTGGGTTT GACAATATCCTGACGCGGGAGAAGAAACGACCTCCCCACCTCGAATCCCC CCTTCGATCGATCAGTGTCCTGTCGAGATGGATGTGGTTCTCCCCTACAC GTAGCCCCCCTTTTCTATCGTATCGTATCGTATCGTTTTTTTTGTTTATT TTTCAGTGCGCCTCTCCGATCATTCCTCTCCTCTCCTCCCAGCTCTCTGG ACCGGGCGTTCTGTGACACGTGCTTTTTATGTATCCTTCGTGTCGCTCTG CTGTGCTATTTATTTTTTATCCCAGGTGGATGGGAAGCCGGGGGGTGAGC TCGGCGACACGGAGCTGATCCGCGGCATCGTCATCGACAAGGAATTCTCT CACGCGCAGGTACGTATGTATGTACGTGCGTGCACAAATATTTAGGCGTC ACATTTTTTCCTTTTCTAGATGATAATTTGGTGTGACCATTATGCTCCGC GACAGAAGCTGCGTTGGGGGGGGGGGGGCGCGATAAACAGTACGGACGCG CCTCAAAGAAAAAGAGAGTGCACATGCCCCACTCAAATAGATCACCCCGC GCACTCTACTGCTCTTTTTGATCGCCTTCCGCTGCATCCTTCTCCGCATG CTTTTTTTTTTTTGGCTCCTGTGCGTGCGTGCGTGCTTAAACATGCACAC GCACATGCAGATGCCCAAGATCGTGAAGGACGCGAAGCTGTGCCTCCTCA CGTGTCCCTTCGAGCCGCCTAAGCCCAAGACCAAGCACAAGCTGGACATC ACCTCGAGGGACGCGTACGAGAAGCTGTTCGAGCGGGAGCAGAAATACTT CGCTGACATGGTGCAGCAGTGCAAGGACGTGGGAACGAACCTGGTGAGAG GGCAAAGAAATACAAATAGAAGCGACATATCATTCTGTCACACACACACA CACACACACACACACACACACACACACACACACACACACGCCGCTGTGAT GTTCTATTTTTTGTCCCGCCAACGTCGAGCGCTTCGCACAATCGCTCTGT TTCGTTTTGCTTTGTATGCCGCTCTTCGCTTCTTCATTGCGCTCTTCGCT TCATTGCCCGTACTTCAATGTTGGAATCTCGATGTTTCGTCGCACCGATT TTTGCCCCTCGCGTAAATACCTTCTCCGGGGTATGTATGTTTGGGGTTGA TTGTGCTGCCCCGCCGGTAGCCCCTGCTCCATTGGCTTGCGAACTGCGTT TAGTTTTTTACGCCTTGGAACTCGTGCTCTCTCCCAAAAAACCGTCCCAT TACCTTTCCCATCGGTCCCCTCCCCCCAAGTATTGCCAGATCTGATCCCA CTTTATAAACACGAAATTCACACCGATCCACGCCGATGGTTTTGTGTTCT CCTGGCCGTACTAGAAGTATATACGGACCTTCGGATGGTGCAGGCGTTTC CCGTACAGTTTGAGTCACTGCTGTCTCTGCCTGCATACCTACCTACCTAG CCTCCATTGAGAATGCCCCGGGGGGGTGCGAACACTTTTCAAAGCCGATT TCCTCCACCACCGTGAGGGTACGATTAGGTAACCAAAAAATGTTAAATTT GGAACGATCTCGACGAAAGCAACCCACACATTGCGGAGAAACTCGACGAG ATCCTTCCAAGGGCAGGCACATCGCTCGGCAAAAGCAACCCGCCCATTGC GGAGAAAATCGGCTTTAAAAATTGTTTGCACCCCCCGGGGCGTTCTCAGG GGATATCAAAGGTGGCCCCCCGGCGGGATACATTCTCTCTCACACACACA CGAACTCCCGTGCGCGATGCTTACAGGTGATCTGCCAGTGGGGCTTTGAT GACGAGGCGAACCACCTTCTGCTCCAGAGCCAGCTCCCAGCCGTGCGCTG GGTGGGTGGGGTGGAGCTCGAGCTCATCGCGATCGCCACCGGCGCCCGTA TCGTCCCTCGATTCAGGTAAATCAAATCAGTATATACATGTGTATGTATA CCGTAGGTGACACAAGATACCACACCCCCTGGACCGAATTTTAGAGCTCC ATTACTCCGTAACGAAGAAGGTGCCAGCACCAAACGAAACATTTTCGGAC AGCCCTCGACTAGATCTTTCCAACGCCACCCCCTTTCGGCACTGGCACTT CTTTTGCTGGGGGGGAATCGGGCTTTGAAAATCTGCCCAGGGGGTGTGGT ATCTTGTGCCACCTACGGTACACTTCGCATGTACATATGGTCCTACCTCT GCACGCACAATGTATGTTTGGAACTTTTGATTTTTATGGTCCGTGTAATG TTGTTGTTTCTTCACATTAAAAACCGTTCCGATCTCTCCACCCAGTACCT CCATATGTCCGTACAATCCAACGCTTCATGCGGTCAATTCCCGTGGTCAC AGGATAACTTAATACCTAAACAAAAAGGTATACGAAAATAAAATGGACCC GCGAAGGGTCAGCACGCGATAAAAATCAAAGACAAATAGTGTGGAGCCCC TCGCTCCCTTCTACACGCTATGCGAGGTAAAAAACAAAACTGACCAAGCC AACATCTCCAACCAGGGGTATACACTCCCTGGTTCTATCTTGGTACCCTA ACAATGCCAGGGTGGTCCGGGCCGGGTTCTCACGTGTATATACTTGGTTA TAGTACAGGCTATACGAAGTAGTGGTATCTATATACTATTTTTGTTCTTG GCGTTTTGGGATCTTTGTTGAATAGCTTAGTTTTGACACTGCGGTTTTGC TTGGTTGGTCGTCCGTCCTTTCTCTCTTCAGCGTAGTCAGCGCTCTGCGA TTCCACAAAAAAGAGGGTGTTGACGTGTTTTCCCAGAGAGTACATGCCGG TACGTATGTATGCGACACGCGGTGGGTGCGTTGAAGGAGGGTGGGTCAAG GGAACCGCCATGCGGGCAGAAGAAACGCAGGAGCTGTTTTTTTCAACGAC GTTTTGGATGAGAAAAGGTGCACGAACAACGGCGGTTTCGTTAAGGCACA CCCTTACCTGCCCCTCGGCGGCGTCTCTGCCGTCAAAAAAGGGGGGGCAC GCCGGTGGCGCGTGGGTACGTACTTGGGCGACCGAGAAACGAAATACGAA CCCCGAGCGACGACCCTCTCGAAAACCCAGATTCATATCTACATGTGTAC CCAGAACACAACAAGAGGGGAGTGAGTGTTGGACGCCTCTGCACAGGAAG GAAACACCTCGGCATCATTCGCGAGACACATATGCACAGGAGTCGGAGTC GCGCCACGTGCGCGCGCGCACACACGCTCAAAACTCAGTTTTTTTTTGCT TCATTTTTTTATGTCTTCTCTTCTCTTCTTTGTTTCCGCTCTTCTCTGCT TTGTTCCGTTTCATCTATTCCTTTGTGCTGTGGCTACTGCTGTGCTGTGC TGCATATCCTGTCGTTGATTCATTCAGCGAGTTGACGGCGGAGAAGCTGG GCAAGGCGGGGGCGGTCCGCGAGGTGTCGTTCGGGACGACCAAGGACCGC ATGCTGGTGATCGAGGACTGCTCCAACTCGACCGCTGTCACGGTACTCGT GCGCGGCGGCAACAAGGTGACTTACGGGATGCATACCATGTACATGGGTG CCCACTTGGTATACTGTACATATAGAAGTACGAAGTATATCTCTCATCGC GTGTCCCCCGCGTCGGTGTGAGTTTTTTTCTTTTCTTTTCTTCACCTTTG TTTCCGGTGCTCTATGGGCTCCTTGCCACGAGGGCATCTTGCCAGAGTAC TGAACCGTGGTGTGAGCGAGTGATTGCAACAACCTTTTATGCTGAGCGCC GTCTATTGCTGTTGTTGTTGTTGTCGTCTTCACATTAAAAAACGAACGTT GGTGTGTATGTACGGGAGGCTTATGCATTTTTCTTTGGTGGTGTTTCGTG GAGCATCTTCCTCCGTAGCTTTTCTCCGCCCACATAAAATGTATCAAAGG CAAACGTAGGTATGTGTCTACACCCATCTCAAATATCGTGTCTGTCGTTG TGCCGCGTATGTATGGATGTTGTAAATATGTTGTCGCAACCGATTCGGCA TGTAAAATAAACAGCTCCCCTGCCCGGCCCGCCCGTGCGACAGATGATCG TGGAGGAGGCGAAGCGATCGCTGCACGACGCGATGTGCGTGGTTCGCAAC CTGATCAAGGACAAGCGCATCGTGTACGGCGGGGGCTCCGCGGAGATCAG CTGCAGCGTGGCTGTGTCCCGCATGGCGGACGAGATCAAGGGGGTGGAGC AGGTGGAGTGAGTCAGGGGGGTGGAGCGGGTGGGGTTTTTTTTTTTGTTT TCATTTTTTCGGTGCTGCTGTCTCGTGTGTATTTATATATGTACTTCGCT ATATAGTTCTTGCTCTTTTCTCTCTTTCTGTAGTTGTGGTTGTGGTTGTT TTGTGTATTGGGACGGATGTGTTTTACTTGTATGTCACTGTTGTAAACGA AGAGGGGCGCTGTGATGCGTGTACACACGGTCAAAAGGATGATGACTTAC CTCAGGCCCTCCCGGCGTTCTCGATTTTGCCGGGAGGCCGGTGCGGACAA CAACACCTGAGCGCCTCTCTCTTCTAAATATGCATGCATACGTTTTCGTA GATTTGGAGGATGAACCTTTCGAGCCTTATGATCATGCAACCCCCACACT TCTTTTTGAACTACTGGTCTGAACGGTACACATGCTTAAATGTTTTTGGA TTGACGGGACCCCCAGCCAGTGAAAACTGCTTGAGCGGCGAGACCGCCAG GGTGCCGGACTGCTGTGTTTTAGCTGTAGTTGTTACTTCTGTTGTTGTCT CTATTTTCGTTTTTGTCTCGTATTTAGTGTGGAGCTGGTGTGAAAGACCA AACAAATCCTTGGCTTGACAGCTTGAGCGTCTTCTGTATAAGCTTGCTCT CTGCGTGTGTGTGGGCTGAGAGTCACTCAACTCGGTCAGCTCATCTTCAA TGCCTGTGGTTCTGTGATTCTGAAACAGCAGGGAGGAACATATTTCACCG AACAGCAGTGGCGTGAGCACGCCCCCATTTAGTGGGGTTGGGCTTCTATT AGAATCACTCGTTTCCGTTGTTTTGGACGCCGCACCTTAAATAGTCCTGC TTTGTTGCCGCGCCTGCCGCCTCCGCTTGTCCCTCCGACTCTGGCTGGTT GTTGCATTTTTTTTTTTTGCAATCTAGTACGCCGTCCGGAGCTTCGCGGA CGCTTTGGACGACATCCCCATGGCCCTGGCCGAAAACGCCGGGCTGTCCC CTATCACCGAGCTGTCGGCCGTCAAGTCCAGGCAGATCGCCGAGGGCATC AGCTCGCTGGGGATCGACTGCAACCAGGTGAGAGAAGCAGGCAAGCCCGC CGCTCGCCGGCAGGTTATGCTCTTGTTGTCGTCGTTATCATTGTTTCGTT GTTGTTGTTGCTGTTGTTGTTTTTGTCGTTGGTTGTTTGTGACTTTTCGA TGCTAAACCGTTTCAACCAAGTAAAGCAGGCAGGCCCGCCGCTCGCCGGC AGATTCTGCTTTTGTTTTTGTTATTGTTTTCGTTGTCTATGTTGTTGCTG TTGCTGTTGTTGTTGTTTGTGACTTTTCGATGCTGAACCGTTTCAACCAG ATGAAGCAGGCAGGCCCGCCGCTCGCCGGCAGATTCTGTTGTTGTTGTTG TTGTTGTGGTTGTGGTTGTCTTTGCTGGTGTTGGTGCTGTTGTTGTTTTT GACTTTTCGATGCTAAGCTGTTCCAAACGTTCCGTCTTCGTGTTACCCCC AGTACTGCCTCGCGTCGCGTTCGGCAGGTCCCACCAGTTAGCGTTGTAAG AAACTCCGTTCGGGCCTGACCCCCGCCCATCCAGCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCC CCCTCCCGTCCTTCCTCCTCCCTCCTCTGTCTCNNNNNNNNNNTTCCCCC CGTAGGCCCACGCGTTCGCGGCGCGGGGCCCCCCCCGTTCGGGAGGGAAG AAACCTCTTTCGGGCCGCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCTGCCCGCGCTTTCCTTCTCCAACGCATTGTTTCACCTCACAACCTCT CGTGCCTTTCTTATAACTAACTGGTTCGTTGCTTTCACTTTTCCCGACGT TGGTCTTGGTTTTTTCTTGTCTGTTTTTTCTTCTTCTTGCGAGCCAGGCG GGCACGTGCGACATGAAGGAGCAGGGGATCTTCGAGACCCTCATCGGGAA GCAGCAGCAGCTCCTCTTGGCAACACAGGTCGTGAAGATGATCCTCAAGA TCGACGACGTCATCATGATGGGCAACTACCAGTGATCTGTCTTTTCTACA TATCTGTTGCCATGTTATCTCGGTGGCTGGGTTCGGTTCGGTTCGGTTCG GTTTGGCGCTGGTCTCCCTCCTCTGGCCTCTGGCCCGTCGCCGCCGCCGT TGTCCAGGGGATGTTTGCCACGTGGGTCTCGGCTGCTGTCCTCGGCGGGT AGTGAAATGTCGCTTCGACGGACGGAAACACTTTGGAGGGAGCTGGGCGT TTTGGGCGTCCGTGTGAACGGGCTGGGGGTAGGTGGGCACTCGCACACGG GGACGCATCGTGAGGAAAGGGAAACAGACAGCACCCAGAGAGCCGCGGGA TGATTGATTCCTGATGGCGTGTAGTGGTGGGTGCTCTGGTGCCCAGGCAG CAGCGAGAGACTAATGTAATGCTGATTGGTGATGCCCTTTGGCGATTGAC GGGCTCGGATACTTGTGTTGATTTAGGACGCGAGAGGACCTATGTGGCTG CAGTGCTCTCTCTCGAATGGCGAGCTTCCTGTTTCTGTGGCGGGCAATGC TCCTTGCTCCTTGCAGCACGGCTTTGTACGTAGTAGACCGGTGCACCATC ATGCATGCTATCGTCGGAATATCGTGTCCCTGTCGTCGCCGTTGGCTAGA AACCCTTCAATAAACTCAAGAGTCCCTGGTTTCAGCGGAGGTCTTTTTTG AGATTTTTCTAGGACTGGCAAGGGCGGCAGGGTGTGGAAGAGAGCTCGTG GGTGTGTCCGTTGGAAGACCTCTTGCTTTCAAGGTGTTGCCCAGGAGACA TCGGTTAAAAATGCAACAACGATCTACCCCTCCGGCGGCCGACCGACTGG ATATCAAGCCGTCCTTATAAGATGTCCCACAACGTTGAAGACCTCGATCG GCCTGATGGACTTGGAGGCGATGCTTGCCCGCAACAACGCCGGCACGATG GACGCACCAGACTTCGACCAAATTGCCATTTTTTCGTATTTTACTGCTGT TG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig51:58096..67397-

>mRNA_L-elsbetiae_contig51.13148.1 ID=mRNA_L-elsbetiae_contig51.13148.1|Name=mRNA_L-elsbetiae_contig51.13148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2244bp|location=Sequence derived from alignment at L-elsbetiae_contig51:58096..67397- (Laminarionema elsbetiae ELsaHSoW15)
ATGACTACGCTGAGCTCCAAGATCATCAACGTCCACAAGCAGAAGATGGC
GAAGATCGCCGTGGACGCGGTCATGGCCGTGGCCAACCTCGACCGCAACG
ACGTCAACTTCGACATGATCAAGGCATGTATGACTACGCTGAGCTCCAAG
ATCATCAACGTCCACAAGCAGAAGATGGCGAAGATCGCCGTGGACGCGGT
CATGGCCGTGGCCAACCTCGACCGCAACGACGTCAACTTCGACATGATCA
AGGCATGTGTGGATGGGAAGCCGGGGGGTGAGCTCGGCGACACGGAGCTG
ATCCGCGGCATCGTCATCGACAAGGAATTCTCTCACGCGCAGGTGGATGG
GAAGCCGGGGGGTGAGCTCGGCGACACGGAGCTGATCCGCGGCATCGTCA
TCGACAAGGAATTCTCTCACGCGCAGATGCCCAAGATCGTGAAGGACGCG
AAGCTGTGCCTCCTCACGTGTCCCTTCGAGCCGCCTAAGCCCAAGACCAA
GCACAAGCTGGACATCACCTCGAGGGACGCGTACGAGAAGCTGTTCGAGC
GGGAGCAGAAATACTTCGCTGACATGGTGCAGCAGTGCAAGGACGTGGGA
ACGAACCTGATGCCCAAGATCGTGAAGGACGCGAAGCTGTGCCTCCTCAC
GTGTCCCTTCGAGCCGCCTAAGCCCAAGACCAAGCACAAGCTGGACATCA
CCTCGAGGGACGCGTACGAGAAGCTGTTCGAGCGGGAGCAGAAATACTTC
GCTGACATGGTGCAGCAGTGCAAGGACGTGGGAACGAACCTGGTGATCTG
CCAGTGGGGCTTTGATGACGAGGCGAACCACCTTCTGCTCCAGAGCCAGC
TCCCAGCCGTGCGCTGGGTGGGTGGGGTGGAGCTCGAGCTCATCGCGATC
GCCACCGGCGCCCGTATCGTCCCTCGATTCAGGTGATCTGCCAGTGGGGC
TTTGATGACGAGGCGAACCACCTTCTGCTCCAGAGCCAGCTCCCAGCCGT
GCGCTGGGTGGGTGGGGTGGAGCTCGAGCTCATCGCGATCGCCACCGGCG
CCCGTATCGTCCCTCGATTCAGCGAGTTGACGGCGGAGAAGCTGGGCAAG
GCGGGGGCGGTCCGCGAGGTGTCGTTCGGGACGACCAAGGACCGCATGCT
GGTGATCGAGGACTGCTCCAACTCGACCGCTGTCACGGTACTCGTGCGCG
GCGGCAACAAGCGAGTTGACGGCGGAGAAGCTGGGCAAGGCGGGGGCGGT
CCGCGAGGTGTCGTTCGGGACGACCAAGGACCGCATGCTGGTGATCGAGG
ACTGCTCCAACTCGACCGCTGTCACGGTACTCGTGCGCGGCGGCAACAAG
ATGATCGTGGAGGAGGCGAAGCGATCGCTGCACGACGCGATGTGCGTGGT
TCGCAACCTGATCAAGGACAAGCGCATCGTGTACGGCGGGGGCTCCGCGG
AGATCAGCTGCAGCGTGGCTGTGTCCCGCATGGCGGACGAGATCAAGGGG
GTGGAGCAGATGATCGTGGAGGAGGCGAAGCGATCGCTGCACGACGCGAT
GTGCGTGGTTCGCAACCTGATCAAGGACAAGCGCATCGTGTACGGCGGGG
GCTCCGCGGAGATCAGCTGCAGCGTGGCTGTGTCCCGCATGGCGGACGAG
ATCAAGGGGGTGGAGCAGTACGCCGTCCGGAGCTTCGCGGACGCTTTGGA
CGACATCCCCATGGCCCTGGCCGAAAACGCCGGGCTGTCCCCTATCACCG
AGCTGTCGGCCGTCAAGTCCAGGCAGATCGCCGAGGGCATCAGCTCGCTG
GGGATCGACTGCAACCAGTACGCCGTCCGGAGCTTCGCGGACGCTTTGGA
CGACATCCCCATGGCCCTGGCCGAAAACGCCGGGCTGTCCCCTATCACCG
AGCTGTCGGCCGTCAAGTCCAGGCAGATCGCCGAGGGCATCAGCTCGCTG
GGGATCGACTGCAACCAGGCGGGCACGTGCGACATGAAGGAGCAGGGGAT
CTTCGAGACCCTCATCGGGAAGCAGCAGCAGCTCCTCTTGGCAACACAGG
TCGTGAAGATGATCCTCAAGATCGACGACGTCATCATGATGGGCAACTAC
CAGTGAGCGGGCACGTGCGACATGAAGGAGCAGGGGATCTTCGAGACCCT
CATCGGGAAGCAGCAGCAGCTCCTCTTGGCAACACAGGTCGTGAAGATGA
TCCTCAAGATCGACGACGTCATCATGATGGGCAACTACCAGTGA
back to top