mRNA_L-elsbetiae_contig5090.13131.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5090.13131.1
Unique NamemRNA_L-elsbetiae_contig5090.13131.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5090.13131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5090contigL-elsbetiae_contig5090:2601..4980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size562
Cds size561
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816517.584327-CDS-L-elsbetiae_contig5090:2600..26591622816517.584327-CDS-L-elsbetiae_contig5090:2600..2659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5090 2601..2659 -
1691683617.1531334-CDS-L-elsbetiae_contig5090:2600..26591691683617.1531334-CDS-L-elsbetiae_contig5090:2600..2659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5090 2601..2659 -
1622816517.5944421-CDS-L-elsbetiae_contig5090:4478..49801622816517.5944421-CDS-L-elsbetiae_contig5090:4478..4980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5090 4479..4980 -
1691683617.1643515-CDS-L-elsbetiae_contig5090:4478..49801691683617.1643515-CDS-L-elsbetiae_contig5090:4478..4980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5090 4479..4980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5090.13131.1prot_L-elsbetiae_contig5090.13131.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5090 2601..4980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5090.13131.1

>prot_L-elsbetiae_contig5090.13131.1 ID=prot_L-elsbetiae_contig5090.13131.1|Name=mRNA_L-elsbetiae_contig5090.13131.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=187bp
MFKLLARTLSCTCIVPDCTCTPPGAKIKMSSNEEESSKPFACDSDFQFCE
ACASTIPRKELMQGTPSTENPLQGWTNKRCYPSFELAAKDRHKRPPEPAS
REGVPPKTIPFTSKFFNTCVVYGAGMPRGTHVWATREDVPHGQQRWFDFH
HYNTMTSFRWSLLLLPQGVTPIRSPGPPSRTKRTKRR
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mRNA from alignment at L-elsbetiae_contig5090:2601..4980-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5090.13131.1 ID=mRNA_L-elsbetiae_contig5090.13131.1|Name=mRNA_L-elsbetiae_contig5090.13131.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2380bp|location=Sequence derived from alignment at L-elsbetiae_contig5090:2601..4980- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCAAGTTGCTGGCTCGCACGCTCTCTTGCACGTGTATTGTACCTGA
TTGTACGTGTACTCCCCCTGGAGCGAAGATAAAAATGTCGAGCAACGAAG
AAGAAAGCTCCAAGCCATTTGCGTGCGATTCAGACTTTCAGTTTTGCGAG
GCTTGCGCCTCGACAATCCCTCGGAAGGAACTCATGCAAGGGACCCCTTC
GACAGAAAATCCGCTTCAGGGCTGGACGAACAAGCGCTGCTATCCCAGCT
TCGAGCTAGCAGCGAAGGACCGACACAAAAGGCCGCCCGAACCGGCGTCA
CGGGAAGGCGTACCTCCCAAGACCATACCCTTTACCAGCAAGTTCTTCAA
CACATGTGTTGTGTATGGGGCCGGCATGCCGAGGGGGACTCACGTCTGGG
CGACCAGAGAAGACGTGCCCCATGGCCAGCAGCGATGGTTTGACTTCCAC
CACTACAATACGATGACTTCCTTCCGGTGGTCTCTCCTGCTGCTCCCTCA
AGGTAATCTACAATAATGATGTGTGTGTGTTTGTGGGACCCTTTGCAGGC
GGTTGAACTGGCTAAATTTACACCGCTCCTCTGTAGTTTGGAGACTGGAG
ACGCGAGCGGGGAATGGCGTCCGTACCGCTGATAAACGGCCCGTCCATGC
TGTACGCTGATCAGGATAACCATGCTATGTCGCTTGCGGGGTACGGTTGT
GTCATTGGCAGGAACGGAGAGGCTTGGAGAATCCTGATGCCCGGACGGTA
CTCTAGATTAGATACGTAGACTATCTACAACATATCATACAATTGAGGCA
CAGGCTACCGTCCGTAGAAGGTGGCCCAGGTCGTGGCAGTATTCACCCAC
TGCCAGGGGCGGCTAGTTTCCTTTCGTGTTACTTAGGCAAGAGGAGAGGC
ACAAGAGTGCCGGACTAGAGTGAGACGTCGAAGACTCTCCGCTCTTGTCT
CGGCAAGTTGTTGTTTGGAAGATTGAGTTTCCATCTGGTATCTTGTCGAT
CCAACGGTTCGATATGATACTCCGATAAAGATACGATCTTCCTCACTTGT
TGGTATGTGTACTTCTGGTTATCATCTCTTACACCTGTCATCCACGCAAT
AAGTAGGTTCATAAACCACTCGACGATACACTACCGCGCTGTCTGTACGA
TAGGAGGATTTATGTAGAAGCGTCGGAATGAGGATTGGAGAGGATCCGAA
CCCATGCCAACAACGGAACGGGGATATTTTCTCCCACGTGTGCTTGTTCC
CATACATTGGCGCGTTCAGTCGCCCGACAACTCACTTAATAGTGTACGAC
ACAGAGGAGCACACCCCCTGGACCGATTTTCAAAGCTCAAAGCACTCCAC
AGCGAGAAAAGCGTCAGTCCCGAAACGGGCGGCGTTGGAAAGATGAAAGA
TCTCATCAAGAGCTGTCCGAAAAGGGTGTCGTTTGGTACATATTAGAGTC
ACACTCTTGCGGAGTAGACTAATCGAGATTTGAAAATCGGTGCAGAAGGG
GTGTGCTATCTTGTGTCGTATACGCGGTAGACTACTGAGAAATTTGGCTT
CAACAGAGCGATTTTCCCTCTGCCCTCGGACATTGAGATGGGGGGATGGC
TCTCCAGCTGCCGCCGAGAACTGACTCAGCATGAAAAATGAGCTAGGTGC
ATAGCGAGAACGAACACCTATTTATCGGTACATAACTTGCAAGGGGTCCA
GGCTAGACTATTGGTCGAACCGTTACTGATCCAGACTACTGGACTACTTT
TCCGAAACGCCATGTAGCCATGCCGGCAGTTGCATGCAGCTGTTCAGCCC
GCATGCAGCACACCTGACGACTTTTGAGACCGAGCGGCTAGTGTAGAGAG
CGGAGTATGCTATTCCAAGAACAAGACACACAATATTAACAGCAGACAAC
TGGTTTGGTTTTGTCTATCAAAAGGAATAATCCACGAGTCCCTTCAAGAA
GGGTGCGCGAGTTCCCTTGATTGTTGTTGTCTTCACATAAAAAATAAAAA
AATGTTCCGATCTCTCGACAAGGTAGATCCAGTACCTCCAGAGTCCGTAC
TTGATACAAGAGCATACCAACGAATTCTAGAAGCGAAGCAGACCAAGCAG
CACCTGCTGTTTTCCTTTGCATGCACCTCACTCGGCGGGCATGCAATCAA
GTGCTTATACGAAGTGGGCCTTATCTTCGTCAAAACTGCTGCGTTGGTAT
TTATGCCGAGTACTTTCGCTACAGCTACAGACGTAGGGGTATGTCGGAGG
TGGATGGGACCCTCAAGAATGCTCTGTCTCATGTGATGCCGGCCCCCCCC
TACGCCGTTGAGAACCCCCAGGTGTGACTCCGATCCGATCGCCGGGGCCC
CCATCAAGAACGAAGCGGACGAAGAGGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5090:2601..4980-

>mRNA_L-elsbetiae_contig5090.13131.1 ID=mRNA_L-elsbetiae_contig5090.13131.1|Name=mRNA_L-elsbetiae_contig5090.13131.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1122bp|location=Sequence derived from alignment at L-elsbetiae_contig5090:2601..4980- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCAAGTTGCTGGCTCGCACGCTCTCTTGCACGTGTATTGTACCTGA
TTGTACGTGTACTCCCCCTGGAGCGAAGATAAAAATGTCGAGCAACGAAG
AAGAAAGCTCCAAGCCATTTGCGTGCGATTCAGACTTTCAGTTTTGCGAG
GCTTGCGCCTCGACAATCCCTCGGAAGGAACTCATGCAAGGGACCCCTTC
GACAGAAAATCCGCTTCAGGGCTGGACGAACAAGCGCTGCTATCCCAGCT
TCGAGCTAGCAGCGAAGGACCGACACAAAAGGCCGCCCGAACCGGCGTCA
CGGGAAGGCGTACCTCCCAAGACCATACCCTTTACCAGCAAGTTCTTCAA
CACATGTGTTGTGTATGGGGCCGGCATGCCGAGGGGGACTCACGTCTGGG
CGACCAGAGAAGACGTGCCCCATGGCCAGCAGCGATGGTTTGACTTCCAC
CACTACAATACGATGACTTCCTTCCGGTGGTCTCTCCTGCTGCTCCCTCA
AGATGTTCAAGTTGCTGGCTCGCACGCTCTCTTGCACGTGTATTGTACCT
GATTGTACGTGTACTCCCCCTGGAGCGAAGATAAAAATGTCGAGCAACGA
AGAAGAAAGCTCCAAGCCATTTGCGTGCGATTCAGACTTTCAGTTTTGCG
AGGCTTGCGCCTCGACAATCCCTCGGAAGGAACTCATGCAAGGGACCCCT
TCGACAGAAAATCCGCTTCAGGGCTGGACGAACAAGCGCTGCTATCCCAG
CTTCGAGCTAGCAGCGAAGGACCGACACAAAAGGCCGCCCGAACCGGCGT
CACGGGAAGGCGTACCTCCCAAGACCATACCCTTTACCAGCAAGTTCTTC
AACACATGTGTTGTGTATGGGGCCGGCATGCCGAGGGGGACTCACGTCTG
GGCGACCAGAGAAGACGTGCCCCATGGCCAGCAGCGATGGTTTGACTTCC
ACCACTACAATACGATGACTTCCTTCCGGTGGTCTCTCCTGCTGCTCCCT
CAAGGTGTGACTCCGATCCGATCGCCGGGGCCCCCATCAAGAACGAAGCG
GACGAAGAGGAGGGTGTGACTCCGATCCGATCGCCGGGGCCCCCATCAAG
AACGAAGCGGACGAAGAGGAGG
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