mRNA_L-elsbetiae_contig5090.13130.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5090.13130.1
Unique NamemRNA_L-elsbetiae_contig5090.13130.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5090.13130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5090contigL-elsbetiae_contig5090:1384..2529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816517.542253-CDS-L-elsbetiae_contig5090:1383..15651622816517.542253-CDS-L-elsbetiae_contig5090:1383..1565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5090 1384..1565 -
1691683617.1341608-CDS-L-elsbetiae_contig5090:1383..15651691683617.1341608-CDS-L-elsbetiae_contig5090:1383..1565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5090 1384..1565 -
1622816517.5521917-CDS-L-elsbetiae_contig5090:2378..25291622816517.5521917-CDS-L-elsbetiae_contig5090:2378..2529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5090 2379..2529 -
1691683617.143507-CDS-L-elsbetiae_contig5090:2378..25291691683617.143507-CDS-L-elsbetiae_contig5090:2378..2529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5090 2379..2529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5090.13130.1prot_L-elsbetiae_contig5090.13130.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5090 1384..2529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5090.13130.1

>prot_L-elsbetiae_contig5090.13130.1 ID=prot_L-elsbetiae_contig5090.13130.1|Name=mRNA_L-elsbetiae_contig5090.13130.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
APTGGEGGDGIGVKEEEEEVGAAEVVKQEEEEEERGGGGAKTEDGVSKRC
GDKPPPSPPRKRSRSSGQLPSSGGEDEASRNLAETRGGPNPPTGAPRLSY
KSGRKRFEKRV
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mRNA from alignment at L-elsbetiae_contig5090:1384..2529-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5090.13130.1 ID=mRNA_L-elsbetiae_contig5090.13130.1|Name=mRNA_L-elsbetiae_contig5090.13130.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1146bp|location=Sequence derived from alignment at L-elsbetiae_contig5090:1384..2529- (Laminarionema elsbetiae ELsaHSoW15)
GCCCCGACGGGGGGCGAGGGTGGAGATGGGATTGGGGTAAAGGAGGAGGA
GGAGGAGGTTGGCGCTGCTGAGGTCGTAAAGCAGGAGGAAGAGGAAGAGG
AGCGCGGGGGTGGCGGAGCCAAAACGGAGGACGGCGTGAGCAAGAGATGC
GGTGAGAAAGCCTTTTCGGCTTCGAAGAGTAGGTATCCTGTGCTACAGGC
GGGAGCTACATACCTTTTTTGTAGAGCTTGACTGGTGCTGGTTTGCCACA
AGCTGTTATTGTACAGATTATGGACTGTATATCGGTTGCGCGGCTGTCGG
TGTGTGGTGGGGGTATCGAAAACGGAACGCTCGTGCGGGAGAACAAACAA
GGCGAATGAGAGGAGAATCGAACCCACAATCGTTGGGGGATGTGAGCACA
GAGGGAGGCAAGAGAGGATCTACTACTACGTAGTCTAAGAGATGATACAT
GTACAGATACGACGTAATGTATGACAAACCACAGCGGGATAATCCTCGCA
ATAGTTTATGGTAGACGGTGGGCACGAGAGATCAAACAGAATGAGGACAG
ATCAGCGGAACGCCCTTATACCACCATGTGTAGCCAAAAACGTGAGGAGC
GCCTCAGTGTTGGTTGGAAGCTTTTTCCAGGAAACAGGAGAGCGGGATTC
CGTGACTGCGTCATATGGTCGACGGCCAAATATGAAGTCGAGCAACAAAT
GCGTCGCCCCCTCCGATAGTTTATTAATCTCTCTCTCTCTCTCTCTATCG
TTATCTCTCTCTGAGTGTGTGTATGTCTGTGTGTGTTGTGTATGTGTGTG
TGTGTGGGTGTCGGTGGATGTGTGTGTGTGGGTGTGTTTTGTGGGTGTGT
TTGTGTGTGTGTGGGTGTGAGAGTGTCCTCAAGCCCTGTGCGCGGTTGTG
TCCACCCCGAATGTTTGATGACCCTGTGTAATTTCGTCGAAAAACATTTT
TTTTTTTTTATCAGGCGACAAGCCGCCGCCCAGTCCTCCTCGAAAGCGGA
GCCGTTCCTCGGGCCAGCTGCCATCCTCCGGTGGCGAAGACGAGGCCTCC
CGCAACCTTGCCGAGACCAGGGGTGGGCCGAACCCCCCAACCGGGGCCCC
GCGGCTGTCATACAAGAGCGGTCGAAAACGATTTGAAAAGAGAGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5090:1384..2529-

>mRNA_L-elsbetiae_contig5090.13130.1 ID=mRNA_L-elsbetiae_contig5090.13130.1|Name=mRNA_L-elsbetiae_contig5090.13130.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig5090:1384..2529- (Laminarionema elsbetiae ELsaHSoW15)
GCCCCGACGGGGGGCGAGGGTGGAGATGGGATTGGGGTAAAGGAGGAGGA
GGAGGAGGTTGGCGCTGCTGAGGTCGTAAAGCAGGAGGAAGAGGAAGAGG
AGCGCGGGGGTGGCGGAGCCAAAACGGAGGACGGCGTGAGCAAGAGATGC
GGCCCCGACGGGGGGCGAGGGTGGAGATGGGATTGGGGTAAAGGAGGAGG
AGGAGGAGGTTGGCGCTGCTGAGGTCGTAAAGCAGGAGGAAGAGGAAGAG
GAGCGCGGGGGTGGCGGAGCCAAAACGGAGGACGGCGTGAGCAAGAGATG
CGGCGACAAGCCGCCGCCCAGTCCTCCTCGAAAGCGGAGCCGTTCCTCGG
GCCAGCTGCCATCCTCCGGTGGCGAAGACGAGGCCTCCCGCAACCTTGCC
GAGACCAGGGGTGGGCCGAACCCCCCAACCGGGGCCCCGCGGCTGTCATA
CAAGAGCGGTCGAAAACGATTTGAAAAGAGAGTCGCGACAAGCCGCCGCC
CAGTCCTCCTCGAAAGCGGAGCCGTTCCTCGGGCCAGCTGCCATCCTCCG
GTGGCGAAGACGAGGCCTCCCGCAACCTTGCCGAGACCAGGGGTGGGCCG
AACCCCCCAACCGGGGCCCCGCGGCTGTCATACAAGAGCGGTCGAAAACG
ATTTGAAAAGAGAGTC
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