mRNA_L-elsbetiae_contig509.13129.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig509.13129.1 vs. uniprot
Match: D8LCW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW4_ECTSI) HSP 1 Score: 779 bits (2011), Expect = 6.480e-254 Identity = 647/1405 (46.05%), Postives = 772/1405 (54.95%), Query Frame = 2
Query: 383 MEKESLQVMKQQLAAVHQLRIDLQRKDSVIQSLQLKVQEGQAARDREGRLEAHCHLLEKRCSYLESTNGEYAERFSALDQESRARVDELMRDTDDLKGQLRDAESEVKAQERRFEAAASAHRRELAAALAEGDDARGLANELRDSVQEASAQAKRRQARWTEMEKLLTSQLEDTRARLKRAERRATVAADVRRKDAEAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSRARENQDSTATFVDLSGQWCGNEILALTWVQVSKALEDLDAARLGHRTAVLSLRDSKRQITVEMKQAGKQQQEMADAKQGLKDLREELSRLSGVEATLHATTAQLESAREREGRRDRQKDAEWSLLWNIGAIKNTAAPRSPSCAGVVRRCRDDADGAPA--GRLRSEGGVDGVSGAVGSGXXXXXXXXXXXXXXXVAGLSRAKASVDD-AKGAEILEGIRLLIAEWSDRGHGVETLRRRLREEGERRDEERGRLERRVHAAEGEAGARGEELARMMLEFETRAACAEAGVDEKVTKAHADGMADASRRLSTAAEEAERXXXXXXXXXXXXXXSVTKATTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDKIEDADRRIHQAQEALESAKSAEAAAVARARAAGEGQRGAEAALRVLGRFVGPLHRLCVELREQKRFLARSYRRDKPLQACASFMSAELFAVAAAVSGKDYWCLLSTAPSGSGPADLSSNSNNAAGPRLQGACRISGSR-GGDXXXXXXDFQHQCQYQDAVDVPPSLRAVVIAVLFANRLTASIREASAARDTFAANGRGG---GLVAGARSE--------RQQRXXVXXXXXXXEGRPTDTRYMTPAGG---LPVLPAGCCGAKGRPLRMPAEAELEAMPDAKALETVLTRLLMGGGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-MSCRALWGGGGAGVGELLYYLLRGRKDHMTRVKLEGAADVLQRRVELLEAELAAKPAVNVDALVAVEEDLKTATAVGEGLRAQVDRLEVELAAARGKTHESAAASRRANVHRDEAEERVRRMDDSKRELVREVEQLKAFAIRANLEREECLEKERALTRERVDETLNATP--GAIPCREGNMAGPPFFYHQVCTYTDLSIELGLYSTRGRATVRAETPRQRRGRHANSADAHINDYTLSSPLPARQWQREREPSEESAEWNRQA-----QPQHQQEHEEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVTASMRRAAARAHGDAEAARKGVRDTEARMSRQESECRRRIALLEARLLETGIKSSRRRDLLQLQACAQEDLAKALTEEIPPTPSTCRDTGVGGASDDSLAEEEREQ 4519
MEKESL VM+QQLAAVHQLRIDLQRKDSVIQSLQLKVQEG++ARDREGRLEAHCHLLEKRCS LESTNGEYAER ALDQESR+RVD L R+ DDL ELAAALAEG DARGLA L++S++EASAQA RRQ RW EMEKL ST FV+LSG+WCGNE+LALTWV+VSK LE L+AA+ GHRTA+ LRD+K Q+ G QQ+E + A Q DLR+ELSR+ VE L +T AQL++ARE+E R+ DA WS L +IGA+ SP G+ DD D + GR+ G G AV V G S A +DD A+ +EI GIR L++EWSDRG G+ETL RRLREEG RRDEER AR+ ++FETRAACAEAG+DEKV K AD +ADA+ R+ST +EEA XXXXXXXXXXXXXX XXXXXXXXXXX +K E+ADRR+ +A+EAL +A+++E AAVA +R+A E Q AEAAL++LGRFVGPLHRLC+ELREQKRFL+RSYRRD PLQA ELF+VAAAV+GKDYWCLLS A D++S NNA R + +G R D D Q AV VPPSLRAVVIAV+ ANRL A R +SAAR T+ + GG G AG +QQR G TD RY+ AGG LPVLP CCG +GR LR+PA ++LE M D +ALETVL RLL+ G G XXX G ++ ALWGGGGA VG+LLY+L+RGRKDHMT VKLE +ADVL+RRVE LEAE +AKPAV+++A A+ E++K ATAVG LR QV RLE L+AAR + E++AAS RA RDEAE R+ R NLER+ECLE+ERA+ R+RVD+TLN T G + + PP V T T TRGR + A P G A A D ++S PL AR+ +R + + +W+ +A Q QHQ M VTASMRRAAARAH DAEAARK V DT+A +SRQE +CRR+++LLEARLLETG ++SRRRDLLQLQACAQEDL KAL + P PSTC DT V SD SL EE E+
Sbjct: 1 MEKESLDVMRQQLAAVHQLRIDLQRKDSVIQSLQLKVQEGESARDREGRLEAHCHLLEKRCSCLESTNGEYAERLGALDQESRSRVDSLRREKDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXELAAALAEGADARGLAGGLKESLEEASAQANRRQGRWAEMEKL--------------------------------------------------------------------------------GSTEAFVELSGRWCGNELLALTWVEVSKTLEALEAAQAGHRTALGRLRDAKLQV-------GTQQEETSGANQVADDLRQELSRMRDVEVRLQSTAAQLKAAREKERRQRVHVDAVWSQLSSIGAV-------SPG--GLEDSNIDDKDNSELFPGRIGCPAGESGSGVAV------------------VEGGSIAGGGLDDDARLSEIPRGIRRLVSEWSDRGKGLETLTRRLREEGARRDEERAEXXXXXXXXXXXXXXXXXXXARLAVDFETRAACAEAGMDEKVAKVQADAVADANLRVSTVSEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVALARGGAA------------------------------------EKEEEADRRVSEAEEALAAARASETAAVALSRSAVERQLSAEAALKILGRFVGPLHRLCLELREQKRFLSRSYRRDAPLQA-------ELFSVAAAVTGKDYWCLLSAATD----IDIASP-NNATTRRRERNPSGNGRRLPYDGACVGEDCQDDGDDVVAVRVPPSLRAVVIAVVAANRLAAFARASSAARRTYHDDSVGGPATGATAGGAXXXXXXXXXXQQQRPRQCRT-----GGETDARYLARAGGIRSLPVLPPWCCGNRGRVLRLPAASDLEEMADGQALETVLARLLVFGTGAEGDDGGEXXXVGGGRRGRNVRAEPMDGNVSGGGGGVLNIEALWGGGGARVGDLLYHLIRGRKDHMTGVKLEESADVLRRRVESLEAEASAKPAVDLEAFAALGEEMKAATAVGARLREQVGRLEEALSAARREVAEASAASERATAGRDEAEARIVRXXXXXXXXXXXXXXXXXXXXXXNLERDECLERERAVARQRVDQTLNETAVIGGGTTDQDLLHTPP---PAVATPT----------TRGRR-LDARGPPLGSGGGREGAPASARDGSVSPPLSARRQRRSLD-EDHVEQWDHRAHADEQQRQHQXXXXXMRQRLVQSQEELRCCRKEEERSRARCSQLETRLAEARDCLEEQKSVTASMRRAAARAHDDAEAARKQVEDTKALVSRQEFQCRRQVSLLEARLLETGARNSRRRDLLQLQACAQEDLVKALRD--PVLPSTCGDTVVSDVSDHSLRAEEVER 1221
BLAST of mRNA_L-elsbetiae_contig509.13129.1 vs. uniprot
Match: A0A6H5KDU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU5_9PHAE) HSP 1 Score: 299 bits (765), Expect = 1.030e-83 Identity = 339/710 (47.75%), Postives = 401/710 (56.48%), Query Frame = 2
Query: 908 ARLKRAERRATVAADVRRKDAEAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSRARENQDSTATFVDLSGQWCGNEILALTWVQVSKALEDLDAARLGHRTAVLSLRDSKRQITVEMKQAGKQQQEMADAKQGLKDLREELSRLSGVEATLHATTAQLESAREREGRRDRQKDAEWSLLWNIGAIKNTAAPRSPSCAGVVRRCRDDADGAPAGRLRSEGGVDGVSGAVGSGXXXXXXXXXXXXXXXVAGLSRAKASVDD-AKGAEILEGIRLLIAEWSDRGHGVETLRRRLREEGERRDEERGRLERRVHAAEGEAGARGEELARMMLEFETRAACAEAGVDEKVTKAHADGMADASRRLSTAAEEAERXXXXXXXXXXXXXXSVTKATTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDKIEDADRRIHQAQEALESAKSAEAAAVARARAAGEGQRGAEAALRVLGRFVGPLHRLCVELREQKRFLARSYRRDKPLQACASFMSAELFAVAAAVSGKDYWCLLSTAPSGSGPADLSSNSNNAAGPRLQGACRISGSRG--GDXXXXXXDFQHQCQYQDAVDVPPSLRAVVIAVLFANRLTASIREASAARDTFAANGRGGGLVAGARSERQQRXXVXXXXXXXEGRPTDTRYMTPAGGLPVLPAGCC 3028
A L RAERRA AD+RR+DAEA XXXXXXXXXXXXXXXXXXXXXXXX G+ QDST FV+LSG+WCGNE+LALTWV+VSKALE L+AA+ GHR A+ LRDSKRQ+ QQ+E + A Q + DLR+ELSR +AR+RE R+ DA WS L +IGA+ SP G+ DD D R +G + G SG+ V G S A +DD + +EI GIR L++EW+DRG G+ETL RLREEG RRDEER LE A AR EE+AR+ ++FETRAACAEAG+DEKV K AD +ADA+ R+S +EEA XXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXX +RR AL +A+ +E AAVA +R+A E Q AEAAL++LGRFVGPLHRLC+ELREQKRFL+RSYRRD PLQA ELF+VAAAV+GKDYWCLLS D+ S N A R + R D D AV VPPSLRAVVIAV+ ANRL A + +SAAR T+ N GG AGA + G TD RY+ + + AG C
Sbjct: 32 AGLARAERRAVATADIRRRDAEAXXXXXXXXXXXXXXXXXXXXXXXXXXRRKS---------GAEGEGAGQDSTEAFVELSGRWCGNELLALTWVEVSKALEALEAAQAGHRIALGRLRDSKRQVAT-------QQEETSSANQVVDDLRQELSRXXXXXXXXXXXXXXXXAARDRERRQRAHVDAVWSQLSSIGAV-------SPG--GLEDSNIDDKDNNEL-FPRRKGCLVGESGS---------------GVAVVEGGSIAGGGLDDEGRLSEIPRGIRRLVSEWADRGKGLETLTGRLREEGARRDEERRELETAAXXXXXXAEARREEVARLAVDFETRAACAEAGMDEKVAKVQADAVADANLRVSNVSEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------NRR------ALAAARDSETAAVALSRSAVERQLSAEAALKILGRFVGPLHRLCLELREQKRFLSRSYRRDAPLQA-------ELFSVAAAVTGKDYWCLLSATTD----IDIDIASPNDATTRRREKKPSGNGRRLLYDGACVGDDCHGDDDDVPAVRVPPSLRAVVIAVVAANRLAAFAQASSAARRTYH-NDSVGGPAAGATA-------------GVAGGETDARYLVGLWLMVRVGAGAC 633
BLAST of mRNA_L-elsbetiae_contig509.13129.1 vs. uniprot
Match: A0A6H5KJW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW4_9PHAE) HSP 1 Score: 130 bits (327), Expect = 6.840e-31 Identity = 77/107 (71.96%), Postives = 86/107 (80.37%), Query Frame = 2
Query: 4199 VTASMRRAAARAHGDAEAARKGVRDTEARMSRQESECRRRIALLEARLLETGIKSSRRRDLLQLQACAQEDLAKALTEEIPPTPSTCRDTGVGGASDDSLAEEEREQ 4519
VT+SMRRAAARAH DAEAARK V DT+A MSRQE ECRR+++LLEARLLE G+++SRRRDLLQLQACAQEDL KAL E P PSTC DT V SD SL EE E+
Sbjct: 53 VTSSMRRAAARAHEDAEAARKQVEDTKALMSRQEFECRRQVSLLEARLLEAGVRNSRRRDLLQLQACAQEDLVKALRE--PVLPSTCGDTVVSDVSDHSLRAEEVER 157
BLAST of mRNA_L-elsbetiae_contig509.13129.1 vs. uniprot
Match: A0A835YWW9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWW9_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 6.640e-7 Identity = 60/175 (34.29%), Postives = 82/175 (46.86%), Query Frame = 2
Query: 35 MADIQGSLQRLQESIRGLSDASALVGALDVSGIDQGIFDEAGGISVSPLQQPAASPPYRHDEGVGSSRSTGMEPDRRSSLGSGGKGSTHELMLSSIPSEMRDSAEMRAARELEDLRMEKESLQVMKQQLAAVHQLRIDLQRKDSVIQSLQLKVQEGQAARDREGRLEAHCHLLEK 559
MAD++ SLQ+LQ+ LSDASA AL G + +VS + SP R D P E SAE+RAA EL+DL E+ SL+++K Q AA+ LR D QRKD++++ LQ ++ Q R RL AHC +LE+
Sbjct: 1 MADLETSLQQLQQLRESLSDASAAGAALLFGGNSHRSSSSS---TVSAADRSPFSPVVRLD-----------------------------------PKESDLSAEVRAAMELDDLVAEERSLRLLKHQRAAIDHLRNDEQRKDALVRELQQQLHAAQTDAGRASRLAAHCRMLEQ 137 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig509.13129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig509.13129.1 >prot_L-elsbetiae_contig509.13129.1 ID=prot_L-elsbetiae_contig509.13129.1|Name=mRNA_L-elsbetiae_contig509.13129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1501bp MADIQGSLQRLQESIRGLSDASALVGALDVSGIDQGIFDEAGGISVSPLQback to top mRNA from alignment at L-elsbetiae_contig509:8880..32153- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig509.13129.1 ID=mRNA_L-elsbetiae_contig509.13129.1|Name=mRNA_L-elsbetiae_contig509.13129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=23274bp|location=Sequence derived from alignment at L-elsbetiae_contig509:8880..32153- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig509:8880..32153- >mRNA_L-elsbetiae_contig509.13129.1 ID=mRNA_L-elsbetiae_contig509.13129.1|Name=mRNA_L-elsbetiae_contig509.13129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=9006bp|location=Sequence derived from alignment at L-elsbetiae_contig509:8880..32153- (Laminarionema elsbetiae ELsaHSoW15)back to top |