mRNA_L-elsbetiae_contig5081.13119.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5081.13119.1
Unique NamemRNA_L-elsbetiae_contig5081.13119.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5081.13119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5081contigL-elsbetiae_contig5081:12374..12860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size488
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816516.0386815-CDS-L-elsbetiae_contig5081:12373..128591622816516.0386815-CDS-L-elsbetiae_contig5081:12373..12859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5081 12374..12859 +
1691683616.0357363-CDS-L-elsbetiae_contig5081:12373..128591691683616.0357363-CDS-L-elsbetiae_contig5081:12373..12859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5081 12374..12859 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5081.13119.1prot_L-elsbetiae_contig5081.13119.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5081 12374..12859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5081.13119.1

>prot_L-elsbetiae_contig5081.13119.1 ID=prot_L-elsbetiae_contig5081.13119.1|Name=mRNA_L-elsbetiae_contig5081.13119.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp
SSSSIRLPTRVQPPTLPRPASHHPPMSGVADTAKSLFGPDTPVKEKQQER
LKRRREFNASQPLFKSSLHDGEGQQDKKTRPPSKRKWSPPMDVADVQKVL
DEQEQRRAGAAAKKRARCCKIECIRKFADSAPSDVAYNAQALSIDQDRMR
KLEREIERKQLV
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mRNA from alignment at L-elsbetiae_contig5081:12374..12860+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5081.13119.1 ID=mRNA_L-elsbetiae_contig5081.13119.1|Name=mRNA_L-elsbetiae_contig5081.13119.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=487bp|location=Sequence derived from alignment at L-elsbetiae_contig5081:12374..12860+ (Laminarionema elsbetiae ELsaHSoW15)
TCATCATCATCAATCCGACTGCCGACACGAGTTCAACCACCAACACTACC
ACGACCAGCGTCGCATCACCCACCAATGAGCGGCGTCGCCGACACAGCGA
AGTCCCTCTTCGGGCCGGACACACCCGTCAAAGAGAAGCAACAGGAACGG
CTTAAGCGGAGACGCGAGTTCAACGCGTCACAGCCCCTTTTCAAAAGTAG
TCTACACGATGGCGAAGGACAGCAAGACAAAAAGACGCGTCCTCCTTCCA
AACGCAAATGGAGCCCGCCCATGGACGTGGCTGACGTTCAAAAGGTCCTC
GACGAACAAGAACAGCGCAGGGCGGGAGCAGCAGCGAAGAAACGGGCGCG
GTGCTGCAAAATCGAGTGCATACGGAAGTTCGCGGACAGTGCTCCGTCAG
ATGTTGCCTACAACGCACAGGCTCTGAGCATAGATCAAGATCGCATGCGG
AAGCTCGAGCGGGAGATCGAGCGCAAGCAGTTGGTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5081:12374..12860+

>mRNA_L-elsbetiae_contig5081.13119.1 ID=mRNA_L-elsbetiae_contig5081.13119.1|Name=mRNA_L-elsbetiae_contig5081.13119.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig5081:12374..12860+ (Laminarionema elsbetiae ELsaHSoW15)
TCATCATCATCAATCCGACTGCCGACACGAGTTCAACCACCAACACTACC
ACGACCAGCGTCGCATCACCCACCAATGAGCGGCGTCGCCGACACAGCGA
AGTCCCTCTTCGGGCCGGACACACCCGTCAAAGAGAAGCAACAGGAACGG
CTTAAGCGGAGACGCGAGTTCAACGCGTCACAGCCCCTTTTCAAAAGTAG
TCTACACGATGGCGAAGGACAGCAAGACAAAAAGACGCGTCCTCCTTCCA
AACGCAAATGGAGCCCGCCCATGGACGTGGCTGACGTTCAAAAGGTCCTC
GACGAACAAGAACAGCGCAGGGCGGGAGCAGCAGCGAAGAAACGGGCGCG
GTGCTGCAAAATCGAGTGCATACGGAAGTTCGCGGACAGTGCTCCGTCAG
ATGTTGCCTACAACGCACAGGCTCTGAGCATAGATCAAGATCGCATGCGG
AAGCTCGAGCGGGAGATCGAGCGCAAGCAGTTGGTGTCATCATCATCAAT
CCGACTGCCGACACGAGTTCAACCACCAACACTACCACGACCAGCGTCGC
ATCACCCACCAATGAGCGGCGTCGCCGACACAGCGAAGTCCCTCTTCGGG
CCGGACACACCCGTCAAAGAGAAGCAACAGGAACGGCTTAAGCGGAGACG
CGAGTTCAACGCGTCACAGCCCCTTTTCAAAAGTAGTCTACACGATGGCG
AAGGACAGCAAGACAAAAAGACGCGTCCTCCTTCCAAACGCAAATGGAGC
CCGCCCATGGACGTGGCTGACGTTCAAAAGGTCCTCGACGAACAAGAACA
GCGCAGGGCGGGAGCAGCAGCGAAGAAACGGGCGCGGTGCTGCAAAATCG
AGTGCATACGGAAGTTCGCGGACAGTGCTCCGTCAGATGTTGCCTACAAC
GCACAGGCTCTGAGCATAGATCAAGATCGCATGCGGAAGCTCGAGCGGGA
GATCGAGCGCAAGCAGTTGGTG
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