mRNA_L-elsbetiae_contig5081.13118.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5081.13118.1
Unique NamemRNA_L-elsbetiae_contig5081.13118.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5081.13118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5081contigL-elsbetiae_contig5081:8261..10130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-23_002950.1
Exons5
Model size827
Cds size819
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5081.13118.1prot_L-elsbetiae_contig5081.13118.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5081 8261..10123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816516.2408-CDS-L-elsbetiae_contig5081:8260..84291622816516.2408-CDS-L-elsbetiae_contig5081:8260..8429Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5081 8261..8429 -
1691683616.129929-CDS-L-elsbetiae_contig5081:8260..84291691683616.129929-CDS-L-elsbetiae_contig5081:8260..8429Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5081 8261..8429 -
1622816516.2519922-CDS-L-elsbetiae_contig5081:8738..89171622816516.2519922-CDS-L-elsbetiae_contig5081:8738..8917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5081 8739..8917 -
1691683616.1484416-CDS-L-elsbetiae_contig5081:8738..89171691683616.1484416-CDS-L-elsbetiae_contig5081:8738..8917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5081 8739..8917 -
1622816516.2642696-CDS-L-elsbetiae_contig5081:9228..94091622816516.2642696-CDS-L-elsbetiae_contig5081:9228..9409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5081 9229..9409 -
1691683616.159-CDS-L-elsbetiae_contig5081:9228..94091691683616.159-CDS-L-elsbetiae_contig5081:9228..9409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5081 9229..9409 -
1622816516.2744045-CDS-L-elsbetiae_contig5081:9667..97991622816516.2744045-CDS-L-elsbetiae_contig5081:9667..9799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5081 9668..9799 -
1691683616.1701543-CDS-L-elsbetiae_contig5081:9667..97991691683616.1701543-CDS-L-elsbetiae_contig5081:9667..9799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5081 9668..9799 -
1622816516.2848375-CDS-L-elsbetiae_contig5081:9965..101231622816516.2848375-CDS-L-elsbetiae_contig5081:9965..10123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5081 9966..10123 -
1691683616.1792967-CDS-L-elsbetiae_contig5081:9965..101231691683616.1792967-CDS-L-elsbetiae_contig5081:9965..10123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5081 9966..10123 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816516.2951152-UTR-L-elsbetiae_contig5081:10123..101301622816516.2951152-UTR-L-elsbetiae_contig5081:10123..10130Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5081 10124..10130 -
1691683616.1875577-UTR-L-elsbetiae_contig5081:10123..101301691683616.1875577-UTR-L-elsbetiae_contig5081:10123..10130Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5081 10124..10130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5081.13118.1

>prot_L-elsbetiae_contig5081.13118.1 ID=prot_L-elsbetiae_contig5081.13118.1|Name=mRNA_L-elsbetiae_contig5081.13118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=273bp
MTTAGLQALKTMEQTKLPNIDKISKNFLLNSTEFRELADSPLQQALFLHI
HARLAKKHSGSKDVPKQAKIQAKHVAGWLEGLELIVPMEQRSTELNKAVE
QYAYGTPTYYTAYLKPHIDDNERLVRDLEAGLPAHTPQLSAEDAKIIRAK
PLTAIRTILQKDAAYEVNLTDYDNKVSTIRNNVAALKLQVVPPDSNAGDT
GEPSRLCAVCKPPEGSPWVSSSCCSYKHTDDCPNTNAGENHGRSKNRTCK
NCSLTQTGKQTGQGSTPAPRTGS
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mRNA from alignment at L-elsbetiae_contig5081:8261..10130-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5081.13118.1 ID=mRNA_L-elsbetiae_contig5081.13118.1|Name=mRNA_L-elsbetiae_contig5081.13118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1870bp|location=Sequence derived from alignment at L-elsbetiae_contig5081:8261..10130- (Laminarionema elsbetiae ELsaHSoW15)
CGGGTACATGACTACCGCAGGCCTCCAGGCCCTCAAAACCATGGAGCAGA
CCAAACTGCCTAATATCGACAAGATCAGCAAGAACTTCCTCCTGAACAGC
ACGGAGTTTAGGGAGCTGGCGGATTCCCCCCTCCAGCAAGCGCTGTTTCT
CCACATCCACGCGAGGTTGGTGTTGTTGTGTTGGAGAAGGATCTATCTGT
GTCGCCCTGTCCGCGCCCAATAATATGTGCACGCAATGGTAACCAACTTG
AGGGCCTGCTGATACAAGAATACCACCTAAAAAACTAACCATGCGTGTAT
TTACGTGTACGTCGTACGTTGCTTTACCCAGGCTCGCAAAAAAACATTCG
GGCAGCAAAGACGTGCCCAAGCAGGCGAAAATTCAGGCGAAACACGTCGC
GGGGTGGCTTGAGGGATTGGAGCTCATCGTACCTATGGAACAGCGGTCGA
CGGAATTGAATAAGTGAGTGCGTTGTTCACGTCACACGACGCTGTTACTT
ACTCGGCCCCGCAGTCTTCCTTCTATTGTCGGACCGTACTTTCCTGCCCG
GCTTACCTCCATGACCGCAAACGCACCCTACCAACCGCGGTGACTTCATG
AGTTACGTTCAACTTCTTGTCTTACCTCTCATAGTCTCATAGGGTTAGGG
TCAGGGTCCGCACCCGACACCTCACTTTTATGCCACGCTGCCGCAACCAA
CGCCCCGCAACCCCAACCAAGGGCTGTGGAGCAGTACGCGTACGGTACTC
CCACCTACTACACCGCGTACTTGAAGCCCCACATCGACGACAACGAGCGG
CTCGTGCGGGACTTGGAGGCCGGGCTCCCCGCTCACACGCCTCAGCTGTC
GGCAGAAGATGCGAAGATCATTCGAGCGAAGCCCCTCACTGCCATCCGCA
CTGTGAGTCGGCAATGACAATTGCCTCCGTGTGAATTCTTCTTGTGCGTG
TTTTAGCTCTCAATCCGACAGCAGAAAATAAACTTAGGTTAGTGTCATGA
GGGAGGATGAAAGCGAAGAAGAGACAAAAAAAGGCCGTGCCCACCCGATC
ATGTCGCCGAAATGCCCACGTAATCCAGGCGTGACAATGTTCTTCTTCAG
ACCGAGCCCCAACACATTCATGACCTACCTCGTAACTTTTCCCTTGGATC
TTCTTTTCTTAGTTCCTTCCACGCACAACAACCCCGGTCATCGACTTGTT
CCTTGTGTACCAGATTCTCCAAAAAGACGCAGCCTACGAGGTAAATCTAA
CCGACTACGACAACAAGGTCAGCACCATCAGGAACAACGTGGCAGCCTTG
AAGCTTCAAGTGGTCCCTCCTGACAGCAACGCTGGCGACACGGGCGAGCC
TTCTCGGCTGTGTGCCGTGTGCAAACCACCTGAGGGTTCACCGTGAGTCG
GACACATGATAACGTGGGGGCACCCGGGGCACCCGTGACGGCGACGCCCG
CCCGCTAACCCTTCGCGCCCCCAATCACCCCGCCCCCCCACACACACGTC
CCGTTTGTTGTGTCGATGGTAGTGCCCAGCCAAGAAACAAACATAACCAA
CACCTCACGTTTTGCTTCCCCCTTCGCCTCAAGTACCAACACTGCTGTGC
TACCATTGCAGCATTGCCGCTTATTTGCTACAGTGCGACACAGGGTAACC
CCTTGTTCTTGTGGTTGGTGCCTTTTGCGTTCATGGTCCCTGTCGGCGCA
GGTGGGTCAGTTCCTCCTGCTGCAGCTACAAGCATACGGACGACTGTCCC
AACACCAACGCTGGTGAAAACCACGGGCGGAGCAAAAACCGGACGTGCAA
GAACTGCAGCCTCACGCAGACTGGAAAGCAGACGGGCCAGGGATCAACGC
CCGCGCCGAGAACGGGGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5081:8261..10130-

>mRNA_L-elsbetiae_contig5081.13118.1 ID=mRNA_L-elsbetiae_contig5081.13118.1|Name=mRNA_L-elsbetiae_contig5081.13118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1638bp|location=Sequence derived from alignment at L-elsbetiae_contig5081:8261..10130- (Laminarionema elsbetiae ELsaHSoW15)
ATGACTACCGCAGGCCTCCAGGCCCTCAAAACCATGGAGCAGACCAAACT
GCCTAATATCGACAAGATCAGCAAGAACTTCCTCCTGAACAGCACGGAGT
TTAGGGAGCTGGCGGATTCCCCCCTCCAGCAAGCGCTGTTTCTCCACATC
CACGCGAGATGACTACCGCAGGCCTCCAGGCCCTCAAAACCATGGAGCAG
ACCAAACTGCCTAATATCGACAAGATCAGCAAGAACTTCCTCCTGAACAG
CACGGAGTTTAGGGAGCTGGCGGATTCCCCCCTCCAGCAAGCGCTGTTTC
TCCACATCCACGCGAGGCTCGCAAAAAAACATTCGGGCAGCAAAGACGTG
CCCAAGCAGGCGAAAATTCAGGCGAAACACGTCGCGGGGTGGCTTGAGGG
ATTGGAGCTCATCGTACCTATGGAACAGCGGTCGACGGAATTGAATAAGC
TCGCAAAAAAACATTCGGGCAGCAAAGACGTGCCCAAGCAGGCGAAAATT
CAGGCGAAACACGTCGCGGGGTGGCTTGAGGGATTGGAGCTCATCGTACC
TATGGAACAGCGGTCGACGGAATTGAATAAGGCTGTGGAGCAGTACGCGT
ACGGTACTCCCACCTACTACACCGCGTACTTGAAGCCCCACATCGACGAC
AACGAGCGGCTCGTGCGGGACTTGGAGGCCGGGCTCCCCGCTCACACGCC
TCAGCTGTCGGCAGAAGATGCGAAGATCATTCGAGCGAAGCCCCTCACTG
CCATCCGCACTGGCTGTGGAGCAGTACGCGTACGGTACTCCCACCTACTA
CACCGCGTACTTGAAGCCCCACATCGACGACAACGAGCGGCTCGTGCGGG
ACTTGGAGGCCGGGCTCCCCGCTCACACGCCTCAGCTGTCGGCAGAAGAT
GCGAAGATCATTCGAGCGAAGCCCCTCACTGCCATCCGCACTATTCTCCA
AAAAGACGCAGCCTACGAGGTAAATCTAACCGACTACGACAACAAGGTCA
GCACCATCAGGAACAACGTGGCAGCCTTGAAGCTTCAAGTGGTCCCTCCT
GACAGCAACGCTGGCGACACGGGCGAGCCTTCTCGGCTGTGTGCCGTGTG
CAAACCACCTGAGGGTTCACCATTCTCCAAAAAGACGCAGCCTACGAGGT
AAATCTAACCGACTACGACAACAAGGTCAGCACCATCAGGAACAACGTGG
CAGCCTTGAAGCTTCAAGTGGTCCCTCCTGACAGCAACGCTGGCGACACG
GGCGAGCCTTCTCGGCTGTGTGCCGTGTGCAAACCACCTGAGGGTTCACC
GTGGGTCAGTTCCTCCTGCTGCAGCTACAAGCATACGGACGACTGTCCCA
ACACCAACGCTGGTGAAAACCACGGGCGGAGCAAAAACCGGACGTGCAAG
AACTGCAGCCTCACGCAGACTGGAAAGCAGACGGGCCAGGGATCAACGCC
CGCGCCGAGAACGGGGAGCGTGGGTCAGTTCCTCCTGCTGCAGCTACAAG
CATACGGACGACTGTCCCAACACCAACGCTGGTGAAAACCACGGGCGGAG
CAAAAACCGGACGTGCAAGAACTGCAGCCTCACGCAGACTGGAAAGCAGA
CGGGCCAGGGATCAACGCCCGCGCCGAGAACGGGGAGC
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