mRNA_L-elsbetiae_contig5081.13117.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5081.13117.1
Unique NamemRNA_L-elsbetiae_contig5081.13117.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5081.13117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5081contigL-elsbetiae_contig5081:7560..8179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size420
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816516.1946278-CDS-L-elsbetiae_contig5081:7560..78161622816516.1946278-CDS-L-elsbetiae_contig5081:7560..7816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5081 7561..7816 -
1691683616.1055293-CDS-L-elsbetiae_contig5081:7560..78161691683616.1055293-CDS-L-elsbetiae_contig5081:7560..7816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5081 7561..7816 -
1622816516.2088563-CDS-L-elsbetiae_contig5081:8018..81791622816516.2088563-CDS-L-elsbetiae_contig5081:8018..8179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5081 8019..8179 -
1691683616.1165264-CDS-L-elsbetiae_contig5081:8018..81791691683616.1165264-CDS-L-elsbetiae_contig5081:8018..8179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5081 8019..8179 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5081.13117.1prot_L-elsbetiae_contig5081.13117.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5081 7561..8179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5081.13117.1

>prot_L-elsbetiae_contig5081.13117.1 ID=prot_L-elsbetiae_contig5081.13117.1|Name=mRNA_L-elsbetiae_contig5081.13117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
QGDSSRERSGKAPRRRSSSNKRRDTTRSPAPPSKRTAGYADLPGQDGDDQ
VQKRAEMTHVQQAKSPLSPDFADIELDGIQSTRKAMLLIVCLTRSPHLLQ
RNPDSEQRLKRLLYHLCHNDLHPRGTVIVAMPTPFHHHA
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mRNA from alignment at L-elsbetiae_contig5081:7560..8179-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5081.13117.1 ID=mRNA_L-elsbetiae_contig5081.13117.1|Name=mRNA_L-elsbetiae_contig5081.13117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=620bp|location=Sequence derived from alignment at L-elsbetiae_contig5081:7560..8179- (Laminarionema elsbetiae ELsaHSoW15)
CAGGGGGACTCGTCCCGGGAGCGGAGCGGGAAGGCACCGCGCAGACGCAG
CAGTAGCAACAAGAGGAGAGACACAACGAGGTCACCTGCGCCGCCGTCGA
AGAGGACGGCCGGGTACGCCGACTTGCCTGGACAGGACGGGGACGACCAG
GTCCAGAAGAGGTATATACGATAACTCGGAAAAGTTGTAATCCGCACGAT
GAGATAAGCCCTGCTAGCCTTGGTTGAAAGCATGTGTAGCCGTGCTGCAG
TTCGGTCTGTTGGGCAGCATGTTGTTGTTGTCCTATCTTGTTCGGTGTAG
TGTTGTTGTGATGACTACAACAGACAACATGCCGTGCTTTGTTCTTCCGC
CTTCTTTTGACAGGGCCGAGATGACTCACGTTCAGCAGGCGAAGTCACCG
CTGTCTCCGGATTTCGCGGACATTGAGCTTGACGGCATACAGTCAACCCG
CAAGGCGATGCTCCTCATCGTCTGCCTCACGCGCTCACCGCATCTTCTGC
AGCGCAACCCCGATTCCGAGCAGCGCCTGAAGAGGTTGTTGTATCATCTG
TGCCACAACGATCTTCACCCGAGGGGTACTGTCATCGTGGCCATGCCCAC
CCCGTTCCACCATCACGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5081:7560..8179-

>mRNA_L-elsbetiae_contig5081.13117.1 ID=mRNA_L-elsbetiae_contig5081.13117.1|Name=mRNA_L-elsbetiae_contig5081.13117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig5081:7560..8179- (Laminarionema elsbetiae ELsaHSoW15)
CAGGGGGACTCGTCCCGGGAGCGGAGCGGGAAGGCACCGCGCAGACGCAG
CAGTAGCAACAAGAGGAGAGACACAACGAGGTCACCTGCGCCGCCGTCGA
AGAGGACGGCCGGGTACGCCGACTTGCCTGGACAGGACGGGGACGACCAG
GTCCAGAAGAGCAGGGGGACTCGTCCCGGGAGCGGAGCGGGAAGGCACCG
CGCAGACGCAGCAGTAGCAACAAGAGGAGAGACACAACGAGGTCACCTGC
GCCGCCGTCGAAGAGGACGGCCGGGTACGCCGACTTGCCTGGACAGGACG
GGGACGACCAGGTCCAGAAGAGGGCCGAGATGACTCACGTTCAGCAGGCG
AAGTCACCGCTGTCTCCGGATTTCGCGGACATTGAGCTTGACGGCATACA
GTCAACCCGCAAGGCGATGCTCCTCATCGTCTGCCTCACGCGCTCACCGC
ATCTTCTGCAGCGCAACCCCGATTCCGAGCAGCGCCTGAAGAGGTTGTTG
TATCATCTGTGCCACAACGATCTTCACCCGAGGGGTACTGTCATCGTGGC
CATGCCCACCCCGTTCCACCATCACGCGGGCCGAGATGACTCACGTTCAG
CAGGCGAAGTCACCGCTGTCTCCGGATTTCGCGGACATTGAGCTTGACGG
CATACAGTCAACCCGCAAGGCGATGCTCCTCATCGTCTGCCTCACGCGCT
CACCGCATCTTCTGCAGCGCAACCCCGATTCCGAGCAGCGCCTGAAGAGG
TTGTTGTATCATCTGTGCCACAACGATCTTCACCCGAGGGGTACTGTCAT
CGTGGCCATGCCCACCCCGTTCCACCATCACGCG
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