mRNA_L-elsbetiae_contig5081.13116.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5081.13116.1 vs. uniprot
Match: D7FZ29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ29_ECTSI) HSP 1 Score: 200 bits (508), Expect = 4.820e-55 Identity = 141/352 (40.06%), Postives = 193/352 (54.83%), Query Frame = 1 Query: 4 LIIEDMGLVVEYGSRGGGRTSKEKQKFLTGGLDYYIIAHQSTKDDHGNLEFTCHQKVTPHNFDHRARATGTRRTTSSTGGSDERCTTALMYDVPHKPPARALPNNVLNFAIQR*QGLPCH*RRGSR*FLTGWTDSEDTVLTLTAESDGVAERAPFYGRRFEGFVTSSKKEEEEAKKEKGDAWRPPQQDVTKRAEEAFDSAYRSGRFKKKATAPA-TCICKGRLPDGIPVDTTPKRIRKDLSDKKKDLNLAPMSD--LPEEDMLQLCARTTS-QLKWTLKVNTNGNQS-LHFTDGLTYQPRASQIPIWGTAVVFDSKGEAEQWLHDSYMED-SADMQYVRLVFVADYVLLKRM 1041 +++ED GLVVEYGSRGGG T++ K+KF+ G LD+YI+AH + D G + FTC+ VTP +F R A + +T ST S R + LM DVP K R +NV+ FAIQR WT + DTV+++ AESDGV E A GR+ E F+ +S E A VT R EEA++ A+R G F +A T I G LPDGIP TTP RI D++ + +L D P+E L A+ + Q+ W +KVN++ + L + +YQ + IP+ G VV+DS G+A L+ +ED S D+Q+VRLV VAD LLK+M Sbjct: 208 MVVEDHGLVVEYGSRGGGLTAESKKKFIGGALDHYIVAHHNGCGDGGGMNFTCNDTVTPQSFTGRRSAGSSDGSTWSTA-SGRRIPSPLMGDVPRKGVTRGYHDNVVQFAIQR------------------WTKAGDTVVSMHAESDGVVECALNLGRKVEAFLVAS--EHHGA--------------VTTRVEEAWEGAWRKGLFTDDGSASEITYISHGSLPDGIPETTTPNRILADVNTRTNNLREGGSVDGATPDERALLGAAQAIAEQMGWVIKVNSDDDLPYLCARNKTSYQTTHNDIPVSGNPVVYDSHGQALDSLN---IEDHSTDLQFVRLVRVADNGLLKKM 521
BLAST of mRNA_L-elsbetiae_contig5081.13116.1 vs. uniprot
Match: A0A6H5JK41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK41_9PHAE) HSP 1 Score: 200 bits (509), Expect = 9.730e-54 Identity = 138/351 (39.32%), Postives = 188/351 (53.56%), Query Frame = 1 Query: 4 LIIEDMGLVVEYGSRGGGRTSKEKQKFLTGGLDYYIIAHQSTKDDHGNLEFTCHQKVTPHNFDHRARATGTRRTTSSTGGSDERCTTALMYDVPHKPPARALPNNVLNFAIQR*QGLPCH*RRGSR*FLTGWTDSEDTVLTLTAESDGVAERAPFYGRRFEGFVTSSKKEEEEAKKEKGDAWRPPQQDVTKRAEEAFDSAYRSGRFKKKATAPA-TCICKGRLPDGIPVDTTPKRIRKDLSDKKKDLNLAPMSD--LPEEDMLQLCARTTS-QLKWTLKVN-TNGNQSLHFTDGLTYQPRASQIPIWGTAVVFDSKGEAEQWLHDSYMEDSADMQYVRLVFVADYVLLKRM 1041 +++ED GLVVEYGSRGGG T++ K+KF+ G LD+YI+AH + D G + FTC+ VTP +F + A + +T ST S R + LM DVPHK R +NV+ FAIQR WT + DTV+++ AESDGV E A GR+ E F+ +S E A VT R EEA++ A+R G F A T I G LPDGIP TTP RI D++ + +L D P+E L A+ + Q+ W +KVN + L + +Y+ + IP+WG VV+DS +A L+ S D+Q+VRLV VAD LLK+M Sbjct: 709 MVVEDHGLVVEYGSRGGGLTAESKKKFIGGALDHYIVAHHNASGDGGGMNFTCNDTVTPQSFTGKLSAGSSDGSTWSTA-SGRRIPSPLMGDVPHKGVTRGYHDNVVQFAIQR------------------WTKAGDTVVSMHAESDGVVEGALNLGRKVEAFLVAS--EHHGA--------------VTTRVEEAWEGAWRKGLFTDDGDASEITYISHGSLPDGIPEITTPHRILADVNTRTNNLREGGRVDGTTPDERALLGAAQAIAEQMGWAIKVNPVDDLPYLCARNKTSYRTAHNDIPVWGKTVVYDSHRQALDSLNVG--NHSTDLQFVRLVRVADNELLKKM 1022
BLAST of mRNA_L-elsbetiae_contig5081.13116.1 vs. uniprot
Match: A0A6H5J8R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R0_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 3.560e-11 Identity = 45/114 (39.47%), Postives = 61/114 (53.51%), Query Frame = 1 Query: 1 QLIIEDMGLVVEYGSRGGGRTSKEKQKFLTGGLDYYIIAHQSTKDDHGNLEFTCHQKVTPHNFDHRARATGTRRTTSSTGGSDERCTTALMYDVPHKPPARALPNNVLNFAIQR 342 +L +E GLVVEYG+RGGG+ S +K LT G+DY +IAH+ D FT + KV P FD R R T ++ S +M VP+ + L +NV +AIQR Sbjct: 34 KLTLEQHGLVVEYGTRGGGQVSPKKALHLTTGVDYLLIAHRQGDD------FTYNDKVIPQKFDGCQRTDEGRHTPNTAAAS-------VMNGVPYVGAKKRLSDNVAVWAIQR 134
BLAST of mRNA_L-elsbetiae_contig5081.13116.1 vs. uniprot
Match: D7G3U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U5_ECTSI) HSP 1 Score: 67.0 bits (162), Expect = 1.980e-8 Identity = 67/264 (25.38%), Postives = 99/264 (37.50%), Query Frame = 1 Query: 262 TALMYDVPHKPPARALPNNVLNFAIQR*QGLPCH*RRGSR*FLTGWTDSEDTVLTLTAESDGVAERAPFYGRRFEGFVTSSKKEEEEAKKEKGDAWRPPQQDVTKRAEEAFDSAYRSGRFKKKATAPATCICK-GRLPDGIPVDTTPKRIRKDLSDKKKDLNLAPMSDLPEEDMLQLCARTTSQLKWTLKVNTNGNQSLHFTDGLTYQPRASQIPIWGTAVVFDSKGEAEQWLHDSYMEDSADMQYVRLVFVADYVLLKRMVDP 1050 T+++ DVP++ P+ VL R +T+ DT++ L AE + GRR E +VTS E E W E AF +AY G F+ + P K GRLP G+P+DTTP P+E +++L+ G+ Y P + IWG V+DS+ +A + S ED+ D +YVRL+ A L+ P Sbjct: 394 TSILTDVPYEGADVDWPSKVLLLLTNR------------------YTNQGDTIIVLGAERNACVATGLARGRRVEAYVTS------ETHVEHVQEW----------GETAFRTAYTRGIFQPEVVVPTEVEIKPGRLPRGLPLDTTP----------------------PKETQFD-------------------DRALYTAPGVNYTPGTFDLLIWGCLHVYDSRRDA----YLSLDEDAHDKRYVRLIRAASNAQLRACCTP 578
BLAST of mRNA_L-elsbetiae_contig5081.13116.1 vs. uniprot
Match: D7FHU2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU2_ECTSI) HSP 1 Score: 62.0 bits (149), Expect = 6.590e-8 Identity = 39/114 (34.21%), Postives = 61/114 (53.51%), Query Frame = 1 Query: 1 QLIIEDMGLVVEYGSRGGGRTSKEKQKFLTGGLDYYIIAHQSTKDDHGNLEFTCHQKVTPHNFDHRARATGTRRTTSSTGGSDERCTTALMYDVPHKPPARALPNNVLNFAIQR 342 +L +E GLVVEYGSRGGG S +K L G+D++++AH+ + FTC++KV P FD R + + ++ S TTA VP+ + +++ + IQR Sbjct: 59 KLTLEQHGLVVEYGSRGGGLVSPKKALHLATGVDHFLVAHRQGDN------FTCNEKVIPQKFDGMLRTSEGKHDPNTAAAS---VTTA----VPYLGAKKRFSDDIAVWVIQR 159 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5081.13116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5081.13116.1 >prot_L-elsbetiae_contig5081.13116.1 ID=prot_L-elsbetiae_contig5081.13116.1|Name=mRNA_L-elsbetiae_contig5081.13116.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp MGLVVEYGSRGGGRTSKEKQKFLTGGLDYYIIAHQSTKDDHGNLEFTCHQback to top mRNA from alignment at L-elsbetiae_contig5081:4784..7278- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5081.13116.1 ID=mRNA_L-elsbetiae_contig5081.13116.1|Name=mRNA_L-elsbetiae_contig5081.13116.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2495bp|location=Sequence derived from alignment at L-elsbetiae_contig5081:4784..7278- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5081:4784..7278- >mRNA_L-elsbetiae_contig5081.13116.1 ID=mRNA_L-elsbetiae_contig5081.13116.1|Name=mRNA_L-elsbetiae_contig5081.13116.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig5081:4784..7278- (Laminarionema elsbetiae ELsaHSoW15)back to top |