mRNA_L-elsbetiae_contig5079.13110.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5079.13110.1
Unique NamemRNA_L-elsbetiae_contig5079.13110.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5079.13110.1 vs. uniprot
Match: A0A6H5JW94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW94_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 8.760e-9
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 2 
Query:   23 MVNVINKTCGHPDCNKRPSYGMAGSKTAEFCAGHAQEGMVDV 148
            M NV++K CGHP C K+PS+G AGSK AEFC  HA++ MV V
Sbjct:    1 MFNVVDKRCGHPGCTKKPSFGTAGSKRAEFCCPHAKQDMVIV 42
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BLAST of mRNA_L-elsbetiae_contig5079.13110.1 vs. uniprot
Match: D8LFX6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFX6_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.160e-8
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = 2 
Query:    5 GHAKEGMVNVINKTCGHPD-CNKRPSYGMAGSKTAEFCAGHAQEGMVDV 148
            GHAKEGM+NV ++TC HP  C  RPSY  AGSK  EFC  HA +G VDV
Sbjct:   30 GHAKEGMINVRDRTCCHPGGCPTRPSYAEAGSKKPEFCVLHAPKGTVDV 78
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BLAST of mRNA_L-elsbetiae_contig5079.13110.1 vs. uniprot
Match: A0A6H5LBM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBM3_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 8.880e-7
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 2 
Query:    8 HAKEGMVNVIN-KTCGHPDCNKRPSYGMAGSKTAEFCAGHAQEGMV 142
            H  +GMV++ N + C H DC K P+YG+ G++ AEFCA HA +GMV
Sbjct:    3 HFTDGMVDIHNIRRCAHEDCVKHPTYGVPGTRKAEFCAPHALDGMV 48
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BLAST of mRNA_L-elsbetiae_contig5079.13110.1 vs. uniprot
Match: A0A6H5KV69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV69_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.470e-5
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 2 
Query:   47 CGHPDCNKRPSYGMAGSKTAEFCAGHAQEGMVDV 148
            CGHP CNK PS+G +G++ A+FCA HA EG+VDV
Sbjct:    6 CGHPSCNKNPSFGESGTRRAQFCAEHAPEGLVDV 39
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BLAST of mRNA_L-elsbetiae_contig5079.13110.1 vs. uniprot
Match: D8LCH9_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH9_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 3.730e-5
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 2 
Query:   23 MVNVINKTCGHPDCNKRPSYGMAGSKTAEFCAGHAQEGMVDV 148
            M++V  KTC H  C  R ++G+ GSK AEFC+ HA++GMVD+
Sbjct:    1 MIHVRAKTCDHVGCTTRANFGVPGSKKAEFCSRHAEDGMVDL 42
[Close]
BLAST of mRNA_L-elsbetiae_contig5079.13110.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 4.840e-5
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 2 
Query:   47 CGHPDCNKRPSYGMAGSKTAEFCAGHAQEGMVDV 148
            CGH +C KRP+YG+AGSK  EFC+ HA++GMV+V
Sbjct:    4 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNV 37
[Close]
BLAST of mRNA_L-elsbetiae_contig5079.13110.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 6.160e-5
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 2 
Query:   47 CGHPDCNKRPSYGMAGSKTAEFCAGHAQEGMVDV 148
            CGH +C KRP+YG+AGSK  EFC+ HA++GMV+V
Sbjct:   64 CGHENCTKRPTYGVAGSKKREFCSQHARDGMVNV 97
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5079.13110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JW94_9PHAE8.760e-961.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFX6_ECTSI2.160e-863.27EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5LBM3_9PHAE8.880e-752.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV69_9PHAE1.470e-564.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCH9_ECTSI3.730e-552.38EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FI73_ECTSI4.840e-564.71EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE6.160e-564.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5079contigL-elsbetiae_contig5079:1087..3546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue9e-07
Seed eggNOG ortholog2880.D8LD34
Hectar predicted targeting categoryother localisation
EggNOG OGs29ZCP@1,2RXW0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1092
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5079.13110.1prot_L-elsbetiae_contig5079.13110.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5079 1109..3142 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816515.2724266-UTR-L-elsbetiae_contig5079:1086..11081622816515.2724266-UTR-L-elsbetiae_contig5079:1086..1108Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5079 1087..1108 +
1691683615.4686913-UTR-L-elsbetiae_contig5079:1086..11081691683615.4686913-UTR-L-elsbetiae_contig5079:1086..1108Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5079 1087..1108 +
1622816515.3077018-UTR-L-elsbetiae_contig5079:3142..35461622816515.3077018-UTR-L-elsbetiae_contig5079:3142..3546Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5079 3143..3546 +
1691683615.501725-UTR-L-elsbetiae_contig5079:3142..35461691683615.501725-UTR-L-elsbetiae_contig5079:3142..3546Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5079 3143..3546 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816515.2836618-CDS-L-elsbetiae_contig5079:1108..17131622816515.2836618-CDS-L-elsbetiae_contig5079:1108..1713Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5079 1109..1713 +
1691683615.4806476-CDS-L-elsbetiae_contig5079:1108..17131691683615.4806476-CDS-L-elsbetiae_contig5079:1108..1713Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5079 1109..1713 +
1622816515.295714-CDS-L-elsbetiae_contig5079:3081..31421622816515.295714-CDS-L-elsbetiae_contig5079:3081..3142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5079 3082..3142 +
1691683615.4914174-CDS-L-elsbetiae_contig5079:3081..31421691683615.4914174-CDS-L-elsbetiae_contig5079:3081..3142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5079 3082..3142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5079.13110.1

>prot_L-elsbetiae_contig5079.13110.1 ID=prot_L-elsbetiae_contig5079.13110.1|Name=mRNA_L-elsbetiae_contig5079.13110.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=222bp
MVNVINKTCGHPDCNKRPSYGMAGSKTAEFCAGHAQEGMVDVNKTCGHPD
CNKQPSYGMAGSKTAEFCAGHAKEGMVGVINKKSCAHPSCNKRPSYGVAG
SKTAEFCAGHAEQGMMNPRSGRIFGGEADSAGGVSVSGSLAVDCTGGRVG
GGIKRKDCAPSTAERETPSTSKHTKRTSAPAVVKVEGDVSVSALSDAAEA
VRRTTGGQKKRHRPGAAPSYP*
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mRNA from alignment at L-elsbetiae_contig5079:1087..3546+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5079.13110.1 ID=mRNA_L-elsbetiae_contig5079.13110.1|Name=mRNA_L-elsbetiae_contig5079.13110.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2460bp|location=Sequence derived from alignment at L-elsbetiae_contig5079:1087..3546+ (Laminarionema elsbetiae ELsaHSoW15)
TGCTGGCCACGCGAAGGAGGGAATGGTGAACGTCATAAACAAGACGTGTG
GCCACCCCGATTGCAACAAGCGGCCGTCGTACGGTATGGCAGGTAGCAAG
ACGGCGGAGTTCTGTGCTGGCCACGCGCAGGAGGGAATGGTGGATGTCAA
CAAGACGTGTGGCCACCCCGATTGCAACAAGCAGCCGTCGTACGGCATGG
CAGGTAGCAAGACGGCGGAGTTCTGTGCTGGCCACGCGAAGGAGGGAATG
GTGGGTGTCATAAACAAAAAGAGTTGCGCCCACCCTAGTTGCAACAAGCG
GCCGTCGTACGGCGTTGCAGGTAGCAAGACGGCGGAGTTCTGCGCTGGAC
ACGCGGAGCAGGGAATGATGAACCCAAGGTCGGGCCGAATTTTCGGTGGA
GAAGCCGACAGTGCCGGCGGCGTGAGCGTAAGTGGTAGTTTGGCCGTAGA
TTGTACCGGGGGCCGCGTTGGAGGGGGGATAAAGCGCAAGGACTGCGCCC
CTTCCACGGCAGAAAGAGAGACCCCGTCCACAAGCAAACACACCAAGCGA
ACCAGTGCCCCTGCCGTGGTGAAGGTTGAAGGAGACGTGTCTGTGTCTGC
CTTGTCGGATGCCGCGGAAGCGGTCAGGTGAGTTGAGAATATCGGCGGTG
TGGTTGTTAACGCAGTGGAACGGCAGCCCGCAGTGCCTATTGGTCGTGCT
CAAGATGTTTGCGATGAACACGCGAGCAAGGGACCCGGCGGCAAGACGAT
ACAGTTTGTCAATCGATCGCTTCATTACAGCAAACTGCTGTGTCGAGCTT
CCGGTAAATTAGGTAGGGCGAGGTCGCACGTCGACAGCTCCAAAGTATTT
TTCTGTAGATACGATGTAGGGACGTGCGTCGTCGGCTGTGGCTTGTTTTA
AATATCGATCACACAGTACTACCAACACGCAACATTTTCTGCTGTCTTGC
CATGTTGATTGCGACCTCTCGAGTATCGTGATCACGGCGTGTACCGTTGC
ACCCCCCGATGTCTTGACCGGCTGGGCAAACATGTAGACAAAACATGAGG
AATGGTGTTTCACCCAAGGAATACTACCGGAATAGTCTGCGGTATCTAAC
GGGTAACCTCGAAACCCGCTAGTAGCAAGCGTCGTGAGTTCCAATCCCTC
TCGGGGTGAAAGTTTGCAAAATTTCTGTTGAAAGCGGATAAAGCTGAAAA
GCTCATGAATTAACAAACTTCGACTTCACCGTTGACGAGGGAAGGGATAG
CCGTACCCTTCTCTTGATAAAACCCAAGGCAAAGCACCGCAGGAGGAAGG
TGGGGCAAAAAAGCAAAAGCAAAAGAAGAAAAAGCCCCAGTGTTTACCCC
TCCTGTGTGACCCCGGCGGATACGTCATGCTGTACAAAGAAGCAGCACCG
CAACGTGCATGTCGTACACACACCGAAACGTGTGGCAGGCGCCCGAATAA
ATGGGACGAAAACACACACACACATGTTGTATGCATCTACGGGTTATGCA
TTGGACCACAAGTATGGGCCATTATCAGGATGTTCCCATATTAGTTCTAA
AGAGACCCAGACGGATATTAGTTCTAGAGAGGCCCAGAAGGATATTAGTT
CTAGAAGATGGACTATCCTTCTTTCCCCCGACGGGACGTTGAAATAGCCC
GTGTGTGTGCTTCTTTCCGTGATCGCTTGGAGGCTCGCCCCCCGTGGTGC
TCGCCCCTACTCGATCACTCCTCTTCTCTTCCTTACCTTTCGGCCAACAA
AGCGCCAGTTCAAACCTCAGTAAATAAGTGTACTTTACAGTCACTCTGTG
AGCCTCTGGACACACTGTTATTACACAGTGCCACATCAAAGGGATACACC
TATCACAAGGTTACATCCCCAACACATCTTGTTGGTCTTGGCACACCTAA
CTGCAGAACCTCTACTTCGCGTCACTACAAGGCGATTTGCGTTACGGCTT
TTAATGCGTCCTTCACTGTGCTTTCCCCTTGGTTCTCTCGATCAGGCGAA
CCACTGGCGGGCAGAAGAAGAGACACCGGCCGGGAGCAGCGCCGAGTTAC
CCTTAAATTTAGTATTTTCTATGAGCGGAGCATGAACACTTTTGGCGTCG
GGAGTGGAGAGTTGCGATTGCTTTGAGAGCAAATGAGAGAATCAAAAGGA
GAACCTCCTAAACAAGAAACCGCGGTCTCTGTGTGGTGATAGTAATATTT
GCAATTGCTTTGCTTTTTTCTACGGGTGTTGTTCGCGACAACCAGCGATG
GAGATTGTTTTTGTCGAACCTAAAACTGCGATATATTTTGACTTTTTAGA
TGCTATTCATGCGATTTGTAAGGGCTCGAGTCATCTGTTGCTTGCATGCG
GGCTCCGCGCATTGTGTGTATCTTGAGATGGTCGGGTACACTTATTGGTG
CCGCATTTCTCTGGAGCAATATCGGGCATGAGAAGAAGGGGCAGGACGAT
AAAAGTGTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5079:1087..3546+

>mRNA_L-elsbetiae_contig5079.13110.1 ID=mRNA_L-elsbetiae_contig5079.13110.1|Name=mRNA_L-elsbetiae_contig5079.13110.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1332bp|location=Sequence derived from alignment at L-elsbetiae_contig5079:1087..3546+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAACGTCATAAACAAGACGTGTGGCCACCCCGATTGCAACAAGCG
GCCGTCGTACGGTATGGCAGGTAGCAAGACGGCGGAGTTCTGTGCTGGCC
ACGCGCAGGAGGGAATGGTGGATGTCAACAAGACGTGTGGCCACCCCGAT
TGCAACAAGCAGCCGTCGTACGGCATGGCAGGTAGCAAGACGGCGGAGTT
CTGTGCTGGCCACGCGAAGGAGGGAATGGTGGGTGTCATAAACAAAAAGA
GTTGCGCCCACCCTAGTTGCAACAAGCGGCCGTCGTACGGCGTTGCAGGT
AGCAAGACGGCGGAGTTCTGCGCTGGACACGCGGAGCAGGGAATGATGAA
CCCAAGGTCGGGCCGAATTTTCGGTGGAGAAGCCGACAGTGCCGGCGGCG
TGAGCGTAAGTGGTAGTTTGGCCGTAGATTGTACCGGGGGCCGCGTTGGA
GGGGGGATAAAGCGCAAGGACTGCGCCCCTTCCACGGCAGAAAGAGAGAC
CCCGTCCACAAGCAAACACACCAAGCGAACCAGTGCCCCTGCCGTGGTGA
AGGTTGAAGGAGACGTGTCTGTGTCTGCCTTGTCGGATGCCGCGGAAGCG
GTCAGATGGTGAACGTCATAAACAAGACGTGTGGCCACCCCGATTGCAAC
AAGCGGCCGTCGTACGGTATGGCAGGTAGCAAGACGGCGGAGTTCTGTGC
TGGCCACGCGCAGGAGGGAATGGTGGATGTCAACAAGACGTGTGGCCACC
CCGATTGCAACAAGCAGCCGTCGTACGGCATGGCAGGTAGCAAGACGGCG
GAGTTCTGTGCTGGCCACGCGAAGGAGGGAATGGTGGGTGTCATAAACAA
AAAGAGTTGCGCCCACCCTAGTTGCAACAAGCGGCCGTCGTACGGCGTTG
CAGGTAGCAAGACGGCGGAGTTCTGCGCTGGACACGCGGAGCAGGGAATG
ATGAACCCAAGGTCGGGCCGAATTTTCGGTGGAGAAGCCGACAGTGCCGG
CGGCGTGAGCGTAAGTGGTAGTTTGGCCGTAGATTGTACCGGGGGCCGCG
TTGGAGGGGGGATAAAGCGCAAGGACTGCGCCCCTTCCACGGCAGAAAGA
GAGACCCCGTCCACAAGCAAACACACCAAGCGAACCAGTGCCCCTGCCGT
GGTGAAGGTTGAAGGAGACGTGTCTGTGTCTGCCTTGTCGGATGCCGCGG
AAGCGGTCAGGCGAACCACTGGCGGGCAGAAGAAGAGACACCGGCCGGGA
GCAGCGCCGAGTTACCCTTAAGCGAACCACTGGCGGGCAGAAGAAGAGAC
ACCGGCCGGGAGCAGCGCCGAGTTACCCTTAA
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