mRNA_L-elsbetiae_contig5076.13105.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5076.13105.1
Unique NamemRNA_L-elsbetiae_contig5076.13105.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5076.13105.1 vs. uniprot
Match: D7FPQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPQ9_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 7.750e-98
Identity = 161/261 (61.69%), Postives = 191/261 (73.18%), Query Frame = 1 
Query:    1 MYAFPDIPRDETRRVGRCSRVFREIYREVGS-----NV-RCNQPSTVQSRVLRWPGPGADPSELVPDAQEAKFFALGAQFIIIQALCKQDLRFKVFYDLTGSSGRAGFAAVGLQQWSKVVSLESSLGGHDTAVKARRLVLRVQPPIALTKPSAWTVEQTNFKKADWIDGDVVFFDGTLFENLDEGVLCRYFQGRLRALQAGSFVVLFTRCADRLLIGDGFRLIYSNTQKHKTADGRGRGRFTSWLFKTSMQSNDRRVGVPD 765
            MYAFPDIPRD+ RRV   S VFR++    GS     NV R  +P+  +   L     G +PS LVPD   AKFFALGAQF+I+Q LC QDLRFK FYDL GSSG+AG +A+ L++WS +VSLESS   +D A+ ARR + RV+ P ALTK  AWT+E T F KADWIDGDVVF DGT+F+ LDEGVL R FQ RL ALQAGSFVV+FT  +++LL GD F+LIYSNT ++ TADGR  GRFTSWLFKT M SND RVGVP+
Sbjct:    1 MYAFPDIPRDKARRVAHASTVFRDVLSAGGSIATQDNVSREKEPAEGEPTAL---DEGENPSGLVPDVLSAKFFALGAQFVILQNLCNQDLRFKKFYDLVGSSGKAGLSALLLERWSSIVSLESSKKNYDCAIMARRAMGRVETPGALTKTPAWTIEHTTFTKADWIDGDVVFLDGTVFKCLDEGVLFRRFQERLGALQAGSFVVVFTFSSEQLLSGD-FKLIYSNTHRYTTADGRAGGRFTSWLFKTLMHSNDHRVGVPE 257
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5076.13105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPQ9_ECTSI7.750e-9861.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5076contigL-elsbetiae_contig5076:2505..5674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size765
Cds size765
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816514.7908156-CDS-L-elsbetiae_contig5076:2504..26131622816514.7908156-CDS-L-elsbetiae_contig5076:2504..2613Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5076 2505..2613 -
1691683615.1339197-CDS-L-elsbetiae_contig5076:2504..26131691683615.1339197-CDS-L-elsbetiae_contig5076:2504..2613Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5076 2505..2613 -
1622816514.8028405-CDS-L-elsbetiae_contig5076:3114..32121622816514.8028405-CDS-L-elsbetiae_contig5076:3114..3212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5076 3115..3212 -
1691683615.1421552-CDS-L-elsbetiae_contig5076:3114..32121691683615.1421552-CDS-L-elsbetiae_contig5076:3114..3212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5076 3115..3212 -
1622816514.8168724-CDS-L-elsbetiae_contig5076:3507..35851622816514.8168724-CDS-L-elsbetiae_contig5076:3507..3585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5076 3508..3585 -
1691683615.1501117-CDS-L-elsbetiae_contig5076:3507..35851691683615.1501117-CDS-L-elsbetiae_contig5076:3507..3585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5076 3508..3585 -
1622816514.828626-CDS-L-elsbetiae_contig5076:3849..39601622816514.828626-CDS-L-elsbetiae_contig5076:3849..3960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5076 3850..3960 -
1691683615.1581082-CDS-L-elsbetiae_contig5076:3849..39601691683615.1581082-CDS-L-elsbetiae_contig5076:3849..3960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5076 3850..3960 -
1622816514.8418298-CDS-L-elsbetiae_contig5076:4205..43101622816514.8418298-CDS-L-elsbetiae_contig5076:4205..4310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5076 4206..4310 -
1691683615.1677892-CDS-L-elsbetiae_contig5076:4205..43101691683615.1677892-CDS-L-elsbetiae_contig5076:4205..4310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5076 4206..4310 -
1622816514.8567774-CDS-L-elsbetiae_contig5076:4486..46081622816514.8567774-CDS-L-elsbetiae_contig5076:4486..4608Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5076 4487..4608 -
1691683615.176041-CDS-L-elsbetiae_contig5076:4486..46081691683615.176041-CDS-L-elsbetiae_contig5076:4486..4608Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5076 4487..4608 -
1622816514.8687675-CDS-L-elsbetiae_contig5076:5532..56741622816514.8687675-CDS-L-elsbetiae_contig5076:5532..5674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5076 5533..5674 -
1691683615.1841207-CDS-L-elsbetiae_contig5076:5532..56741691683615.1841207-CDS-L-elsbetiae_contig5076:5532..5674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5076 5533..5674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5076.13105.1prot_L-elsbetiae_contig5076.13105.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5076 2505..5674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5076.13105.1

>prot_L-elsbetiae_contig5076.13105.1 ID=prot_L-elsbetiae_contig5076.13105.1|Name=mRNA_L-elsbetiae_contig5076.13105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=255bp
MYAFPDIPRDETRRVGRCSRVFREIYREVGSNVRCNQPSTVQSRVLRWPG
PGADPSELVPDAQEAKFFALGAQFIIIQALCKQDLRFKVFYDLTGSSGRA
GFAAVGLQQWSKVVSLESSLGGHDTAVKARRLVLRVQPPIALTKPSAWTV
EQTNFKKADWIDGDVVFFDGTLFENLDEGVLCRYFQGRLRALQAGSFVVL
FTRCADRLLIGDGFRLIYSNTQKHKTADGRGRGRFTSWLFKTSMQSNDRR
VGVPD
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mRNA from alignment at L-elsbetiae_contig5076:2505..5674-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5076.13105.1 ID=mRNA_L-elsbetiae_contig5076.13105.1|Name=mRNA_L-elsbetiae_contig5076.13105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3170bp|location=Sequence derived from alignment at L-elsbetiae_contig5076:2505..5674- (Laminarionema elsbetiae ELsaHSoW15)
ATGTACGCATTTCCTGATATCCCTAGAGATGAAACTCGAAGGGTCGGCCG
GTGTTCGAGAGTTTTTCGAGAGATATATCGAGAGGTAGGAAGTAATGTGC
GGTGCAATCAACCATCGACCGTACAATCACGGGTACTACGGTGTCTAGTC
TGTGTATTGTAGACTAGAGATGCAGGTACATATTAGATAGATACGCCGCC
AACCACGTTCGGTCTTGGCTCCGTTATGTTAACGCTTGTATAGTGTTAAG
GACATGCAGTGGCTGACTTCTTTTACACGATACACGAGTAGACTTAGACT
AGACTAGACTAGACTAACTATGTATTGTTATTGTATTGTAGATAATATGT
AGGAGTATGATTTTGGCAACACACGACCCATGTAGGGCCCGCTGTCATAA
CTTCGTATGTAACCTCAAGCAAGGCCACTTCTTTATTATTTCGTACCGAT
ACCCACACATCTGAAAATATATATCGTTGCCACGATTGACTTTGTGGTGG
CTCACACGTGAACAACGTATTATACTACGAGTTCGAAGGGATAGATATTG
CACGAAGAGACATTCGTCTGATCCACATATCTATAGACTAGTCTATATCT
AGATAGATAGGTATGTATCTATGAATTACTTGCAAGAGGTAGGGGTGTCG
TTGGTCGTATGAGCGTCAAGAGACAAGATCAATCGGTTCATGCAAGATTC
GGTGCTCCAGAAACGCTCAACCTTGCTCTGCGTGTACAAAGCTAAAGCTA
TTTCCGCGGGTTACACCACCATATAGACTACCACGTTATCTGGAAAAGCG
TGGCAACACCATCAGGCGGTAGACTGAACTCCCGGCCCAATAGACTGAGA
ACGGTTGCGCCTATCTACATCGCGTCGTCAATTAACGCTGAGCTAGATAG
AATAGTACTACTACCGTATTTCCACCTTTCTTTCCAGTTTGTGCGCCGCC
GAGGCCGAACAACAGCTTTGCTACCGAGCCACACTGCATACTGTAGCTAC
GTAGAACCTCCTATCTGAGCGTTTGGCCGTGGTGAAAACAACAGGTAGGG
GGGGGAGGGAGGCAAGGGCCGGGACCAGGTGCGGATCCCTCGGAGCTTGT
TCCAGACGCTCAGGAAGCCAAGTTCTTCGCACTTGGAGCACAGTTCATCA
TCATCCAAGCGCTCTGCAAACAGGACCTACGATTCAAGGTAACCTAAGGG
GAAGGAATGCTACGGACTCAAGTATCATTCCTCCCTGCAAGGGAAGCACA
GCGCTATACACACTCTAGATGCAATGGGGCATTGCGTCTCTCCCCTTTTG
GACCAATCTATCGATGACCTTACTCGCCATATACCCTTCGCCCGATCCTC
GTGGGGCATTCAAGGTTTTTTACGACCTAACAGGCTCTAGCGGACGAGCC
GGCTTTGCAGCCGTAGGTCTCCAGCAGTGGTCGAAGGTCGTCAGCCTCGA
AAGCTCCTTGGGGGGTCATGTGAGAGGGCAAATAAAACGATTTGTATCCG
ATATTGCACGTCGTGTGTTATGTATATGTCGACTCCAGTCGATCGACGAG
TTGTGCGGTCACGATTTGCCGATGAATACTAGACTAGTGCGAATTCCGGC
ACGGTCTTCGCCTCCCAAGCGGTGCCATGGATACACGGGGTGCCTGTGCC
ACGACCACGCCGCAATACCCTTCATCACTGCTGTCGCCCGTAAACCACTT
GATACATACTGCAGGACACTGCGGTTAAGGCCAGACGTCTTGTGCTGCGT
GTTCAGCCGCCAATCGCTTTGACGAAACCATCAGCTTGGACGGTCGAGCA
GACCAATTTTAAAAAGGCAGATTGGGTGAGATAACCAACTGGGCGTATTA
CGTGAGGAGTGTTGAAAAGTGCATTCGAAGCAGCACGTGCTTAGCTATGT
TGACAAGACCCCCCAGTACCGAAACCGGAGGTTCCGAATTCTAGAATAAA
ACCATGGAGTCTAGTCTTGTATATTCCAGGCATGCGAGAAAACACTCCGA
GATGCAGCTTGCCGGCCGGGTAGGTGTGCGTTTTATTCATGTCTGATTTG
TTTTCTGCGTGTCCACCATAATTTTCTCTGGTGGTGCAGATTGACGGCGA
CGTTGTGTTCTTCGACGGGACATTGTTCGAGAACTTAGATGAGGGCGTGC
TTTGCCGCTATTTTCAGGTAATTAATTATCATTTGAAAAAGGCTGTTGTA
CCTGCTCTGTTTCACCCTGCAGGCGTAAGTATCGTATAAAGGGTTTTGCC
ACCTTTTCTACACCTCTAGATATGTAAGAAGTAGCCAGATTACATAACTA
CATTACGAAGGTACAGTATGTATTGCTGCAGAACTACATACACATGTTGA
CGATATTGAAGATACCTAGACTGAATCAAAATGACTCAAAGGAGCTCTTT
CCCAAAAAGCACGCTGGGAGTGTTACACAAGATTAAGATTCGACCCTTCC
CTCGGCTTGCAGGGGCGACTGAGGGCCCTGCAGGCGGGATCGTTTGTGGT
ATTGTTCACTCGTTGCGCGGACCGACTCTTAATTGGCGACGGTTTCAGGC
TGATTTACAGGTGGGCAAAACACGCGGGGGTGAGGTGGATCGTCGCGCCA
CAAAGAGGAGTCGATGCATGTATTATGTACATTTTGAACGAAGTATATCT
TATATTAGACTATGTGCCTTGTGCCAGCCCAACCCAAACGCATGGTTACA
GCAATTACCCAAGCAAACTACTGTCGCGTGAAAGCAAACTCACAGATGAT
GCGGACTAAAGTTCACCGTGGATATGGACGTGTGCCATCCTTATATCTAT
GTAAGAGAGGTATGAACCTCCCACGCGCTGTCTGTAGACGACGTTTGACC
TTTTTCACATTTAAGGTACATTAGTAGTTTTCGGTGGACAAAGTCCCGGG
TTCAAACCCCGTAATGATTTCTGACCGACCACCTTGACGGTGTATCTATG
TATTTATCTATCAGTGTACCAACAAGAACATGATGGGGAGGGACTCCATG
CCCATGCTCACGTCGCGCCTGCCTTTACGCCTTATCTGCTCTTCTGTACC
GCGCGGCGAAGCAACACGCAGAAGCACAAGACAGCGGACGGGCGCGGCCG
CGGAAGATTCACCTCCTGGCTTTTCAAGACCTCCATGCAGAGCAACGATC
GTAGAGTCGGCGTGCCCGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5076:2505..5674-

>mRNA_L-elsbetiae_contig5076.13105.1 ID=mRNA_L-elsbetiae_contig5076.13105.1|Name=mRNA_L-elsbetiae_contig5076.13105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1530bp|location=Sequence derived from alignment at L-elsbetiae_contig5076:2505..5674- (Laminarionema elsbetiae ELsaHSoW15)
ATGTACGCATTTCCTGATATCCCTAGAGATGAAACTCGAAGGGTCGGCCG
GTGTTCGAGAGTTTTTCGAGAGATATATCGAGAGGTAGGAAGTAATGTGC
GGTGCAATCAACCATCGACCGTACAATCACGGGTACTACGGTATGTACGC
ATTTCCTGATATCCCTAGAGATGAAACTCGAAGGGTCGGCCGGTGTTCGA
GAGTTTTTCGAGAGATATATCGAGAGGTAGGAAGTAATGTGCGGTGCAAT
CAACCATCGACCGTACAATCACGGGTACTACGGTGGCCGGGACCAGGTGC
GGATCCCTCGGAGCTTGTTCCAGACGCTCAGGAAGCCAAGTTCTTCGCAC
TTGGAGCACAGTTCATCATCATCCAAGCGCTCTGCAAACAGGACCTACGA
TTCAAGGGCCGGGACCAGGTGCGGATCCCTCGGAGCTTGTTCCAGACGCT
CAGGAAGCCAAGTTCTTCGCACTTGGAGCACAGTTCATCATCATCCAAGC
GCTCTGCAAACAGGACCTACGATTCAAGGTTTTTTACGACCTAACAGGCT
CTAGCGGACGAGCCGGCTTTGCAGCCGTAGGTCTCCAGCAGTGGTCGAAG
GTCGTCAGCCTCGAAAGCTCCTTGGGGGGTCATGTTTTTTACGACCTAAC
AGGCTCTAGCGGACGAGCCGGCTTTGCAGCCGTAGGTCTCCAGCAGTGGT
CGAAGGTCGTCAGCCTCGAAAGCTCCTTGGGGGGTCATGACACTGCGGTT
AAGGCCAGACGTCTTGTGCTGCGTGTTCAGCCGCCAATCGCTTTGACGAA
ACCATCAGCTTGGACGGTCGAGCAGACCAATTTTAAAAAGGCAGATTGGG
ACACTGCGGTTAAGGCCAGACGTCTTGTGCTGCGTGTTCAGCCGCCAATC
GCTTTGACGAAACCATCAGCTTGGACGGTCGAGCAGACCAATTTTAAAAA
GGCAGATTGGATTGACGGCGACGTTGTGTTCTTCGACGGGACATTGTTCG
AGAACTTAGATGAGGGCGTGCTTTGCCGCTATTTTCAGATTGACGGCGAC
GTTGTGTTCTTCGACGGGACATTGTTCGAGAACTTAGATGAGGGCGTGCT
TTGCCGCTATTTTCAGGGGCGACTGAGGGCCCTGCAGGCGGGATCGTTTG
TGGTATTGTTCACTCGTTGCGCGGACCGACTCTTAATTGGCGACGGTTTC
AGGCTGATTTACAGGGGCGACTGAGGGCCCTGCAGGCGGGATCGTTTGTG
GTATTGTTCACTCGTTGCGCGGACCGACTCTTAATTGGCGACGGTTTCAG
GCTGATTTACAGCAACACGCAGAAGCACAAGACAGCGGACGGGCGCGGCC
GCGGAAGATTCACCTCCTGGCTTTTCAAGACCTCCATGCAGAGCAACGAT
CGTAGAGTCGGCGTGCCCGATCAACACGCAGAAGCACAAGACAGCGGACG
GGCGCGGCCGCGGAAGATTCACCTCCTGGCTTTTCAAGACCTCCATGCAG
AGCAACGATCGTAGAGTCGGCGTGCCCGAT
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