mRNA_L-elsbetiae_contig5072.13101.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5072.13101.1
Unique NamemRNA_L-elsbetiae_contig5072.13101.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5072.13101.1 vs. uniprot
Match: D7FXB6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXB6_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.890e-31
Identity = 56/90 (62.22%), Postives = 73/90 (81.11%), Query Frame = 2 
Query:    2 PNDRETLWPSKRNGGRQKALIDQAKKNNTFPGQADLRTNVAKIIGVPEEEVNFTSVREVFACYEAHGVPLPAKAVSSGAVDVVQDFTGWM 271
            P +RETLWPSKRN G+Q  LI +A   +TFPGQA+L+T  A+++GVPE++V +T+VREV +CYEAHGV LPA A+SSG V+ V D+TGWM
Sbjct:  223 PPERETLWPSKRNRGKQDRLIARAIAESTFPGQAELKTKTAEMVGVPEDDVKWTAVREVLSCYEAHGVALPAGAISSGLVEGVVDYTGWM 312
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BLAST of mRNA_L-elsbetiae_contig5072.13101.1 vs. uniprot
Match: A0A7R9U2J4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2J4_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 2.030e-5
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 2 
Query:  140 PEEEVNFTSVREVFACYEAHGVPLPAKAVSSGAVDVVQDFTGWM 271
            P + V ++  REV ACYEAHG+PLP ++VS+  +  V D+T WM
Sbjct:    1 PRDGVRWSEAREVLACYEAHGLPLP-RSVSTMFISDVSDYTAWM 43
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5072.13101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXB6_ECTSI1.890e-3162.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9U2J4_9STRA2.030e-550.00Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5072contigL-elsbetiae_contig5072:3538..5392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size276
Cds size273
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5072.13101.1prot_L-elsbetiae_contig5072.13101.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5072 3538..5390 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816514.3713126-CDS-L-elsbetiae_contig5072:3537..36641622816514.3713126-CDS-L-elsbetiae_contig5072:3537..3664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5072 3538..3664 +
1691683614.8810396-CDS-L-elsbetiae_contig5072:3537..36641691683614.8810396-CDS-L-elsbetiae_contig5072:3537..3664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5072 3538..3664 +
1622816514.3834295-CDS-L-elsbetiae_contig5072:4143..42361622816514.3834295-CDS-L-elsbetiae_contig5072:4143..4236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5072 4144..4236 +
1691683614.8899484-CDS-L-elsbetiae_contig5072:4143..42361691683614.8899484-CDS-L-elsbetiae_contig5072:4143..4236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5072 4144..4236 +
1622816514.3991163-CDS-L-elsbetiae_contig5072:5337..53901622816514.3991163-CDS-L-elsbetiae_contig5072:5337..5390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5072 5338..5390 +
1691683614.8980863-CDS-L-elsbetiae_contig5072:5337..53901691683614.8980863-CDS-L-elsbetiae_contig5072:5337..5390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5072 5338..5390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5072.13101.1

>prot_L-elsbetiae_contig5072.13101.1 ID=prot_L-elsbetiae_contig5072.13101.1|Name=mRNA_L-elsbetiae_contig5072.13101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
AERQGDAVAEQAQRWQAEGPDRPSQKEQHLPWPGGLEDKCRKDNRSTGGG
SQLHERQGGVRLLRGARGSPACKGRELRRGGRRAGLHRLDV
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mRNA from alignment at L-elsbetiae_contig5072:3538..5392+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5072.13101.1 ID=mRNA_L-elsbetiae_contig5072.13101.1|Name=mRNA_L-elsbetiae_contig5072.13101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1855bp|location=Sequence derived from alignment at L-elsbetiae_contig5072:3538..5392+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGAACGACAGGGAGACGCTGTGGCCGAGCAAGCGCAACGGTGGCAGGC
AGAAGGCCCTGATCGACCAAGCCAAAAAGAACAACACCTTCCCTGGCCAG
GCGGACTTGAGGACAAATGTCGCAAAGGTGACGATATCGGGCAACAGTGG
GAGAGAAACAGACAGACATGCAGACAACCAGAGAGGGAGTGCAGAGATCG
AGGCACAGGAAGAGTAGAGACAGAGAGAGAGAGGGTCGAGAGAGAGAGGA
TAAATATGTGGTTAACACTTCGGTAACGTCGGCAAGCGACGCCCGGTGGT
CGCAGTAGTAAAAAACAGTTCGTGTCGAGACAGTAGTGCCAAGACAAACA
AAACCGCGTCTAGTAGCTGCTGGTATAAGACACGCGAGGATGATGAACAA
GCTTATTACCAGTTTCGTTCACTTCACTCTTCGTCCGTGCTAACAATTAA
GCTTCTCAAACTCACTCCTCGTTCTTGCCGAAAGAAAACCAGATCCCGAA
CAAACGCCATTGATTATTTTTTTGTCCATTGCACAACAACAGGACCTGTC
AATCTTTTATTTTGTTTAGTTTGACGTGCTGTGCTGTCTGTCCCCTCTCT
GTACAGATAATCGGAGTACCGGAGGAGGAAGTCAACTTCACGAGCGTCAG
GGAGGTGTTCGCCTGCTACGAGGCGCACGGGGTTCCCCTGCCTGCAAAGG
TACACATGATATATATAGCGATAAAGAATGAATAATGAAAACAAGCAAAC
AGCTAGCTAGCACTGGAACCGATTTTCATTTATCTCGATTACGATCGATG
GTGGCGGCAAGTAATAAGCCCTGTCCATGACCAACGTACCCTTTGGCGGG
GCGCCCCCTGCCAGAGATGGCACGCGCCACGCCCTAAATAAATCTCCCAT
CGTTTTCATTGACACCGAGGACGGCTCCTCGAAGTGGTGGTGGGTGTTAT
TTTGTCCTTACATACTTCCCTTTTTTGGCCGAATCCATCGTTTTTGCCTG
CCTTTCCCAGGGTGTCCCGAACGAAACACCATACACATCAGCCCGCTCTC
AGTGCTATTTTTTTGAGAGATACGTACATCAGATCCTCAAAAACGGGACA
CCTAACTAACCCGCATTGAGACGGGACTCCATGGGGTTCTTCAACCGGTA
TAATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATT
ATTTTATTTGCCATCCGGCAATTGCAGATGATGTATCCAACCAAAATGTC
TTCTAAACTGATGATGCTATTCTTACATGCTCGAATATTATTCCATATCA
AATTTAGTGAATGAAGTGATATTGGTCCGGCCGAGCAGAAAACAAATTGT
TTTTATGTTTTACGTCCAACCTGCGAAAAATTCGTTCCAGGGGGACTGTT
GTTGTAGACACTTAATCCTCCCTCACCGCCCCTTACTACTGCCATTTTTT
GTGCCATTTTTGTGCTGTGAAAATACGAGGAACAACCTCTCAATAACGCC
GCTGTTCTGCTTCACAATATATATTGCCAAAACCCTTTGAAAAAAAGTCG
TCGCGATTAAATTACTTTGATTCGTGATTACTTAAACAAAACGAGTGGGT
TGTGTGTTGTATGTTTGTATGTCCGTATGTACTATTTATGTATGACATGT
TTGACGTATTTTGTATAGGTGTGTGTTAGTATTATCATTTAAAATCAAAA
CCACCCGTCCGTTCGTTCATTCAAATACAAACGGGTCCCCCTACAAACAT
AACAGAACCGAACTAAACAGAACCGAACCGAACCAAACCGAACTGTGCAG
GCCGTGAGCTCCGGCGCGGTGGACGTCGTGCAGGACTTCACCGGCTGGAT
GTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5072:3538..5392+

>mRNA_L-elsbetiae_contig5072.13101.1 ID=mRNA_L-elsbetiae_contig5072.13101.1|Name=mRNA_L-elsbetiae_contig5072.13101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig5072:3538..5392+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGAACGACAGGGAGACGCTGTGGCCGAGCAAGCGCAACGGTGGCAGGC
AGAAGGCCCTGATCGACCAAGCCAAAAAGAACAACACCTTCCCTGGCCAG
GCGGACTTGAGGACAAATGTCGCAAAGGCCGAACGACAGGGAGACGCTGT
GGCCGAGCAAGCGCAACGGTGGCAGGCAGAAGGCCCTGATCGACCAAGCC
AAAAAGAACAACACCTTCCCTGGCCAGGCGGACTTGAGGACAAATGTCGC
AAAGATAATCGGAGTACCGGAGGAGGAAGTCAACTTCACGAGCGTCAGGG
AGGTGTTCGCCTGCTACGAGGCGCACGGGGTTCCCCTGCCTGCAAAGATA
ATCGGAGTACCGGAGGAGGAAGTCAACTTCACGAGCGTCAGGGAGGTGTT
CGCCTGCTACGAGGCGCACGGGGTTCCCCTGCCTGCAAAGGCCGTGAGCT
CCGGCGCGGTGGACGTCGTGCAGGACTTCACCGGCTGGATGTGGCCGTGA
GCTCCGGCGCGGTGGACGTCGTGCAGGACTTCACCGGCTGGATGTG
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