mRNA_L-elsbetiae_contig5037.13062.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5037.13062.1
Unique NamemRNA_L-elsbetiae_contig5037.13062.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5037.13062.1 vs. uniprot
Match: D8LHT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHT1_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 8.630e-52
Identity = 140/215 (65.12%), Postives = 150/215 (69.77%), Query Frame = 1 
Query:    1 MEKFQRGGGELDLSQLEGGGGXXXXXXXXPAA-DGRRGDSVDSFAAEDGXXXXXXXXXXXXXXGEGGREKGLEDLLWGHETYESDGFDSSLEEQVEAMYDCLKADLSVSLEETRRGADAAAFGGAPTKSG-DRPWGSGGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGAGAAGEGRYLWGCTSPQEEREQLVSFVSLGCFDPSARLQ 639
            ME+FQRGGGELDLSQL GG            +  G   D V  + AED XXXXXXXXXXXXXX  GG+ KGL DLLWGHE YESDGFDSSLE+QVEAMY+CLKA L+VSLEE R GADAAAFG A  K+G DRPWG+                   XXXXXXXXXXXX      EG G   EG+YLWGCTSPQEEREQLVSF SLGCFDPSARLQ
Sbjct:    1 MERFQRGGGELDLSQLGGGSSNGDYERRLSVSIAGAAEDIVAGWEAEDXXXXXXXXXXXXXXXX-GGKAKGLGDLLWGHEAYESDGFDSSLEDQVEAMYECLKAHLTVSLEENRGGADAAAFGAAAKKTGGDRPWGA--------ASGPQTIADVVXXXXXXXXXXXXEVPPSDEGDG---EGQYLWGCTSPQEEREQLVSFASLGCFDPSARLQ 203
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BLAST of mRNA_L-elsbetiae_contig5037.13062.1 vs. uniprot
Match: A0A6H5KVI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI4_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.820e-48
Identity = 135/215 (62.79%), Postives = 144/215 (66.98%), Query Frame = 1 
Query:    1 MEKFQRGGGELDLSQLEGGGGXXXXXXXXPAA-DGRRGDSVDSFAAEDGXXXXXXXXXXXXXXGEGGREKGLEDLLWGHETYESDGFDSSLEEQVEAMYDCLKADLSVSLEETRRGADAAAFGGAPTKSG-DRPWGSGGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGAGAAGEGRYLWGCTSPQEEREQLVSFVSLGCFDPSARLQ 639
            ME+FQRGGGELDLSQL GG            +  G   D    + AED  XXXXXXXXXXXXX E G+ KGL DLLWGHE YESDGFDSSLE+QVEAMYDCLKA L+VSLEE R GADAAAFG    K+G DRPWG+                    XXXXXXXXX        EG G   EG+YLWGCTSPQEEREQLVSF SLGCFDPSARLQ
Sbjct:  273 MERFQRGGGELDLSQLGGGSSNGDYERQISVSIAGAAEDIAAGWQAEDDEXXXXXXXXXXXXX-ESGKAKGLGDLLWGHEAYESDGFDSSLEDQVEAMYDCLKAHLTVSLEENRGGADAAAFGATAKKTGGDRPWGA--------ASGPKTIADVVAXXXXXXXXXGGEMPSSDEGDG---EGQYLWGCTSPQEEREQLVSFASLGCFDPSARLQ 475
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5037.13062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHT1_ECTSI8.630e-5265.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVI4_9PHAE1.820e-4862.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5037contigL-elsbetiae_contig5037:10727..12537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_000340.1
Exons3
Model size660
Cds size660
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5037.13062.1prot_L-elsbetiae_contig5037.13062.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5037 10727..12537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816508.871425-CDS-L-elsbetiae_contig5037:10726..108131622816508.871425-CDS-L-elsbetiae_contig5037:10726..10813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5037 10727..10813 +
1691683610.727582-CDS-L-elsbetiae_contig5037:10726..108131691683610.727582-CDS-L-elsbetiae_contig5037:10726..10813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5037 10727..10813 +
1622816508.8822157-CDS-L-elsbetiae_contig5037:10900..111031622816508.8822157-CDS-L-elsbetiae_contig5037:10900..11103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5037 10901..11103 +
1691683610.7386932-CDS-L-elsbetiae_contig5037:10900..111031691683610.7386932-CDS-L-elsbetiae_contig5037:10900..11103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5037 10901..11103 +
1622816508.8945322-CDS-L-elsbetiae_contig5037:12167..125371622816508.8945322-CDS-L-elsbetiae_contig5037:12167..12537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5037 12168..12537 +
1691683610.7556708-CDS-L-elsbetiae_contig5037:12167..125371691683610.7556708-CDS-L-elsbetiae_contig5037:12167..12537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5037 12168..12537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5037.13062.1

>prot_L-elsbetiae_contig5037.13062.1 ID=prot_L-elsbetiae_contig5037.13062.1|Name=mRNA_L-elsbetiae_contig5037.13062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=220bp
MEKFQRGGGELDLSQLEGGGGDGGGGGEGPAADGRRGDSVDSFAAEDGDE
EEKEEEEEEDEEGEGGREKGLEDLLWGHETYESDGFDSSLEEQVEAMYDC
LKADLSVSLEETRRGADAAAFGGAPTKSGDRPWGSGGTGGGGGGGGGGPN
TIADVIAAAASAGGSPSAGGGGEGAGAAGEGRYLWGCTSPQEEREQLVSF
VSLGCFDPSARLQVCSVCT*
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mRNA from alignment at L-elsbetiae_contig5037:10727..12537+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5037.13062.1 ID=mRNA_L-elsbetiae_contig5037.13062.1|Name=mRNA_L-elsbetiae_contig5037.13062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1811bp|location=Sequence derived from alignment at L-elsbetiae_contig5037:10727..12537+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAAAGTTTCAGCGGGGCGGGGGCGAGTTAGATCTGAGCCAGCTGGA
GGGCGGCGGCGGCGACGGCGGGGGCGGCGGCGAGGGCGTTGCGGGGAATG
GAAAACCTCTATCCTCTGGTGCGGCAGCGGGCGGCATGGTGGGGAGCACG
GCCGCCAGAGGACGCTCGGGCAAGCCTGCTGCCGATGGCCGGCGTGGTGA
CAGCGTTGACTCTTTTGCGGCTGAGGATGGCGACGAGGAGGAGAAGGAGG
AAGAGGAGGAAGAGGACGAAGAGGGGGAGGGAGGGAGAGAAAAGGGGCTC
GAAGACTTGCTGTGGGGGCACGAAACGTACGAGAGTGATGGCTTCGACTC
CAGCCTCGAGGAACAGGTGGAAGCCATGTGAGTCGAACTCGCCGCACCCA
CCTTCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCACCCCCACACTCACAACCCACACACCAATAAC
AAAAAGACAGGGCGAGTGGNNNNNNNNNNGGGAGTGTGTTCCCCCCCCCC
CCCAGGGAAAAGGTGGGCGGCAATTGTGTCGGCCCGCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCTCCGATCCCGCATTGACACGTACTAA
GTGACTAGCTCAACTCAGACGATATCTCAAGACTCTTATCGAAGGAGAAA
AGGCAGCGTGTGCTCGTGTTATCTACGCGCTGATTGTGCGTACTCGTTGT
TGTACCAGCCTGCACCCGCCGGAGGAGTGACTTATTTTGTCAGGTGTTAT
GTTGTGTTTGTCTGTTGTTTCTTTGCTTGTTTGTATTCTCGACCTGCGTC
GTGTCCTGTCCGAGCGTATTTTATTTTATTTTATTTTTTGTATCCCCTGT
TGGTGGGCGGTGTAATCGGGTGGAGGACTATGTAGACCTGTGCGGGCCTG
GCCGGCGAGAACCCGGAGCGGAACCCCCCGGCTTTGTTGGGGTACCAAGA
TAGTGGTGTTGGCTGTTCCAGTTTTGTTTTACCTCACATAGCGTGTAGAG
GGGAGCGAAGGGCTCCAGACTCGATATCTGTTTCATTATTGCTTTGCTGG
TCCTTCGGGTCCATTTTATTTTTCGTGTACCTTGGGCATAAGTTAGTTTG
TGACGACGGGAATTGACCGCATCAAGTGTTGGATTAGTACGCACATTAGA
GGTACTGGATGGACAGATCGGAACGGTTTTTAATGTGAAGACAACATAAA
TACATATTGCCAGTGCACCCACGGTCGGTTGCTCAACCTCCCCCCCCTCC
ATCCTTCCTCCCGCGCCCCCCCCGTCCTCCTCCCATACCGTCGAAATTTC
CTCCTATCGATAAAAAAACTGGAACGAACCCGAAACCCCCTCGAACGGCG
ACAAACGCACGACACACATCAATACTCCAAACCAACACCAGGTACGACTG
CCTGAAGGCAGACCTCAGCGTCAGCCTCGAGGAGACCCGGAGAGGGGCAG
ACGCCGCCGCGTTCGGCGGCGCCCCGACTAAAAGCGGCGACCGGCCGTGG
GGGTCCGGCGGGACCGGTGGCGGCGGTGGCGGCGGCGGCGGCGGCCCGAA
CACCATCGCCGACGTGATTGCGGCCGCCGCCTCGGCCGGGGGAAGCCCCT
CCGCGGGCGGCGGCGGGGAGGGCGCGGGGGCGGCCGGGGAAGGGCGGTAC
TTGTGGGGGTGCACCTCGCCGCAAGAGGAGCGGGAGCAGCTGGTGTCGTT
CGTGTCGCTCGGGTGCTTCGACCCTAGCGCTCGCTTGCAGGTGTGTTCGG
TGTGTACGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5037:10727..12537+

>mRNA_L-elsbetiae_contig5037.13062.1 ID=mRNA_L-elsbetiae_contig5037.13062.1|Name=mRNA_L-elsbetiae_contig5037.13062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig5037:10727..12537+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAAAGTTTCAGCGGGGCGGGGGCGAGTTAGATCTGAGCCAGCTGGA
GGGCGGCGGCGGCGACGGCGGGGGCGGCGGCGAGGGCATGGAAAAGTTTC
AGCGGGGCGGGGGCGAGTTAGATCTGAGCCAGCTGGAGGGCGGCGGCGGC
GACGGCGGGGGCGGCGGCGAGGGCCCTGCTGCCGATGGCCGGCGTGGTGA
CAGCGTTGACTCTTTTGCGGCTGAGGATGGCGACGAGGAGGAGAAGGAGG
AAGAGGAGGAAGAGGACGAAGAGGGGGAGGGAGGGAGAGAAAAGGGGCTC
GAAGACTTGCTGTGGGGGCACGAAACGTACGAGAGTGATGGCTTCGACTC
CAGCCTCGAGGAACAGGTGGAAGCCATCCTGCTGCCGATGGCCGGCGTGG
TGACAGCGTTGACTCTTTTGCGGCTGAGGATGGCGACGAGGAGGAGAAGG
AGGAAGAGGAGGAAGAGGACGAAGAGGGGGAGGGAGGGAGAGAAAAGGGG
CTCGAAGACTTGCTGTGGGGGCACGAAACGTACGAGAGTGATGGCTTCGA
CTCCAGCCTCGAGGAACAGGTGGAAGCCATGTACGACTGCCTGAAGGCAG
ACCTCAGCGTCAGCCTCGAGGAGACCCGGAGAGGGGCAGACGCCGCCGCG
TTCGGCGGCGCCCCGACTAAAAGCGGCGACCGGCCGTGGGGGTCCGGCGG
GACCGGTGGCGGCGGTGGCGGCGGCGGCGGCGGCCCGAACACCATCGCCG
ACGTGATTGCGGCCGCCGCCTCGGCCGGGGGAAGCCCCTCCGCGGGCGGC
GGCGGGGAGGGCGCGGGGGCGGCCGGGGAAGGGCGGTACTTGTGGGGGTG
CACCTCGCCGCAAGAGGAGCGGGAGCAGCTGGTGTCGTTCGTGTCGCTCG
GGTGCTTCGACCCTAGCGCTCGCTTGCAGGTGTGTTCGGTGTGTACGTAG
GTACGACTGCCTGAAGGCAGACCTCAGCGTCAGCCTCGAGGAGACCCGGA
GAGGGGCAGACGCCGCCGCGTTCGGCGGCGCCCCGACTAAAAGCGGCGAC
CGGCCGTGGGGGTCCGGCGGGACCGGTGGCGGCGGTGGCGGCGGCGGCGG
CGGCCCGAACACCATCGCCGACGTGATTGCGGCCGCCGCCTCGGCCGGGG
GAAGCCCCTCCGCGGGCGGCGGCGGGGAGGGCGCGGGGGCGGCCGGGGAA
GGGCGGTACTTGTGGGGGTGCACCTCGCCGCAAGAGGAGCGGGAGCAGCT
GGTGTCGTTCGTGTCGCTCGGGTGCTTCGACCCTAGCGCTCGCTTGCAGG
TGTGTTCGGTGTGTACGTAG
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