mRNA_L-elsbetiae_contig5034.13057.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5034.13057.1
Unique NamemRNA_L-elsbetiae_contig5034.13057.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5034.13057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5034contigL-elsbetiae_contig5034:10262..10550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size262
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816508.5074723-CDS-L-elsbetiae_contig5034:10261..103111622816508.5074723-CDS-L-elsbetiae_contig5034:10261..10311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5034 10262..10311 -
1691683610.471081-CDS-L-elsbetiae_contig5034:10261..103111691683610.471081-CDS-L-elsbetiae_contig5034:10261..10311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5034 10262..10311 -
1622816508.5191772-CDS-L-elsbetiae_contig5034:10339..105501622816508.5191772-CDS-L-elsbetiae_contig5034:10339..10550Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5034 10340..10550 -
1691683610.4850407-CDS-L-elsbetiae_contig5034:10339..105501691683610.4850407-CDS-L-elsbetiae_contig5034:10339..10550Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5034 10340..10550 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5034.13057.1prot_L-elsbetiae_contig5034.13057.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5034 10262..10550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5034.13057.1

>prot_L-elsbetiae_contig5034.13057.1 ID=prot_L-elsbetiae_contig5034.13057.1|Name=mRNA_L-elsbetiae_contig5034.13057.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
HFQVGLTNTSRRQHRPQQRQRRRLSAFGPCAGLRDAPAAAAALRAQAARA
RAGGALGSIFSHRSDCSSSSTTTVKAPSRLPRATGC*
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mRNA from alignment at L-elsbetiae_contig5034:10262..10550-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5034.13057.1 ID=mRNA_L-elsbetiae_contig5034.13057.1|Name=mRNA_L-elsbetiae_contig5034.13057.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=289bp|location=Sequence derived from alignment at L-elsbetiae_contig5034:10262..10550- (Laminarionema elsbetiae ELsaHSoW15)
CATTTCCAAGTCGGGTTGACGAACACCTCGCGGCGGCAGCACCGTCCACA
GCAGCGACAGCGGCGGCGGTTATCAGCTTTTGGGCCATGCGCCGGGTTGC
GCGACGCCCCAGCGGCGGCAGCCGCGCTGCGAGCGCAAGCGGCGAGGGCA
CGTGCGGGAGGCGCCCTCGGTAGCATTTTCAGCCACAGGAGTGACTGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACGACCGTC
AAGGCGCCCAGCCGTCTGCCTCGAGCAACGGGGTGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5034:10262..10550-

>mRNA_L-elsbetiae_contig5034.13057.1 ID=mRNA_L-elsbetiae_contig5034.13057.1|Name=mRNA_L-elsbetiae_contig5034.13057.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig5034:10262..10550- (Laminarionema elsbetiae ELsaHSoW15)
CATTTCCAAGTCGGGTTGACGAACACCTCGCGGCGGCAGCACCGTCCACA
GCAGCGACAGCGGCGGCGGTTATCAGCTTTTGGGCCATGCGCCGGGTTGC
GCGACGCCCCAGCGGCGGCAGCCGCGCTGCGAGCGCAAGCGGCGAGGGCA
CGTGCGGGAGGCGCCCTCGGTAGCATTTTCAGCCACAGGAGTGACTGCAG
CAGCAGCAGCACATTTCCAAGTCGGGTTGACGAACACCTCGCGGCGGCAG
CACCGTCCACAGCAGCGACAGCGGCGGCGGTTATCAGCTTTTGGGCCATG
CGCCGGGTTGCGCGACGCCCCAGCGGCGGCAGCCGCGCTGCGAGCGCAAG
CGGCGAGGGCACGTGCGGGAGGCGCCCTCGGTAGCATTTTCAGCCACAGG
AGTGACTGCAGCAGCAGCAGCACGACGACCGTCAAGGCGCCCAGCCGTCT
GCCTCGAGCAACGGGGTGTTGACGACGACCGTCAAGGCGCCCAGCCGTCT
GCCTCGAGCAACGGGGTGTTGA
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