mRNA_L-elsbetiae_contig5033.13055.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5033.13055.1
Unique NamemRNA_L-elsbetiae_contig5033.13055.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5033.13055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5033contigL-elsbetiae_contig5033:2425..3201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size777
Cds size777
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816508.3476226-CDS-L-elsbetiae_contig5033:2424..32011622816508.3476226-CDS-L-elsbetiae_contig5033:2424..3201Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5033 2425..3201 +
1691683610.3620741-CDS-L-elsbetiae_contig5033:2424..32011691683610.3620741-CDS-L-elsbetiae_contig5033:2424..3201Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5033 2425..3201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5033.13055.1prot_L-elsbetiae_contig5033.13055.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5033 2425..3201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5033.13055.1

>prot_L-elsbetiae_contig5033.13055.1 ID=prot_L-elsbetiae_contig5033.13055.1|Name=mRNA_L-elsbetiae_contig5033.13055.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=259bp
IVEEEVVPSSYSWSSMVSSLVKGDCGEDLLEEEAAVPPEKISSSWSSIIS
EVRHGRVGRHPSVIPEEDPLDLSGSFNDIQPETPPETPETTTLTGLSAES
GLLLEDGPTGEESHDATRSTAVSAAGTLTFRDNEVVQQHQISGAPARDTT
TVSSAERRGRTLKPDTPPNDGEGVQLQSHAVERGWPEKGAQGFSGTEVHV
TTNNASAGAEGDGGGESHGATALDSEPETENVVVGIKNDDADGRSSSSPT
AAAAVGGSG
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mRNA from alignment at L-elsbetiae_contig5033:2425..3201+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5033.13055.1 ID=mRNA_L-elsbetiae_contig5033.13055.1|Name=mRNA_L-elsbetiae_contig5033.13055.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=777bp|location=Sequence derived from alignment at L-elsbetiae_contig5033:2425..3201+ (Laminarionema elsbetiae ELsaHSoW15)
ATAGTGGAAGAGGAGGTGGTCCCATCTTCTTATTCGTGGAGCTCTATGGT
ATCATCTCTAGTCAAAGGCGACTGCGGAGAAGACCTTCTCGAGGAAGAGG
CCGCCGTCCCCCCGGAAAAAATCTCATCTTCGTGGAGTTCCATTATTTCG
GAAGTACGCCATGGCCGCGTGGGAAGGCACCCCAGTGTCATTCCAGAAGA
AGATCCGCTTGATTTGAGCGGGTCATTCAACGACATCCAGCCAGAAACGC
CACCCGAGACACCCGAGACCACCACTCTCACTGGACTGTCGGCGGAAAGT
GGTCTTCTTCTTGAAGATGGTCCGACCGGGGAAGAGTCGCACGACGCCAC
ACGATCGACGGCGGTTTCAGCAGCGGGAACATTAACATTTCGCGACAACG
AAGTCGTGCAGCAGCATCAGATCTCGGGGGCACCCGCTCGGGATACTACT
ACTGTAAGCAGCGCGGAGCGCCGCGGAAGAACGTTGAAACCAGACACTCC
GCCAAACGACGGCGAAGGAGTGCAACTTCAAAGCCACGCCGTGGAACGGG
GATGGCCTGAAAAGGGGGCGCAGGGGTTCTCCGGGACAGAGGTACACGTA
ACGACCAACAACGCGAGCGCGGGCGCGGAGGGTGATGGCGGCGGAGAGAG
CCACGGGGCAACTGCGTTAGACAGCGAACCCGAGACAGAGAACGTAGTCG
TAGGCATTAAAAATGATGATGCCGATGGTAGAAGTAGCAGCAGTCCTACC
GCAGCGGCAGCGGTCGGTGGGAGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5033:2425..3201+

>mRNA_L-elsbetiae_contig5033.13055.1 ID=mRNA_L-elsbetiae_contig5033.13055.1|Name=mRNA_L-elsbetiae_contig5033.13055.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1554bp|location=Sequence derived from alignment at L-elsbetiae_contig5033:2425..3201+ (Laminarionema elsbetiae ELsaHSoW15)
ATAGTGGAAGAGGAGGTGGTCCCATCTTCTTATTCGTGGAGCTCTATGGT
ATCATCTCTAGTCAAAGGCGACTGCGGAGAAGACCTTCTCGAGGAAGAGG
CCGCCGTCCCCCCGGAAAAAATCTCATCTTCGTGGAGTTCCATTATTTCG
GAAGTACGCCATGGCCGCGTGGGAAGGCACCCCAGTGTCATTCCAGAAGA
AGATCCGCTTGATTTGAGCGGGTCATTCAACGACATCCAGCCAGAAACGC
CACCCGAGACACCCGAGACCACCACTCTCACTGGACTGTCGGCGGAAAGT
GGTCTTCTTCTTGAAGATGGTCCGACCGGGGAAGAGTCGCACGACGCCAC
ACGATCGACGGCGGTTTCAGCAGCGGGAACATTAACATTTCGCGACAACG
AAGTCGTGCAGCAGCATCAGATCTCGGGGGCACCCGCTCGGGATACTACT
ACTGTAAGCAGCGCGGAGCGCCGCGGAAGAACGTTGAAACCAGACACTCC
GCCAAACGACGGCGAAGGAGTGCAACTTCAAAGCCACGCCGTGGAACGGG
GATGGCCTGAAAAGGGGGCGCAGGGGTTCTCCGGGACAGAGGTACACGTA
ACGACCAACAACGCGAGCGCGGGCGCGGAGGGTGATGGCGGCGGAGAGAG
CCACGGGGCAACTGCGTTAGACAGCGAACCCGAGACAGAGAACGTAGTCG
TAGGCATTAAAAATGATGATGCCGATGGTAGAAGTAGCAGCAGTCCTACC
GCAGCGGCAGCGGTCGGTGGGAGCGGGATAGTGGAAGAGGAGGTGGTCCC
ATCTTCTTATTCGTGGAGCTCTATGGTATCATCTCTAGTCAAAGGCGACT
GCGGAGAAGACCTTCTCGAGGAAGAGGCCGCCGTCCCCCCGGAAAAAATC
TCATCTTCGTGGAGTTCCATTATTTCGGAAGTACGCCATGGCCGCGTGGG
AAGGCACCCCAGTGTCATTCCAGAAGAAGATCCGCTTGATTTGAGCGGGT
CATTCAACGACATCCAGCCAGAAACGCCACCCGAGACACCCGAGACCACC
ACTCTCACTGGACTGTCGGCGGAAAGTGGTCTTCTTCTTGAAGATGGTCC
GACCGGGGAAGAGTCGCACGACGCCACACGATCGACGGCGGTTTCAGCAG
CGGGAACATTAACATTTCGCGACAACGAAGTCGTGCAGCAGCATCAGATC
TCGGGGGCACCCGCTCGGGATACTACTACTGTAAGCAGCGCGGAGCGCCG
CGGAAGAACGTTGAAACCAGACACTCCGCCAAACGACGGCGAAGGAGTGC
AACTTCAAAGCCACGCCGTGGAACGGGGATGGCCTGAAAAGGGGGCGCAG
GGGTTCTCCGGGACAGAGGTACACGTAACGACCAACAACGCGAGCGCGGG
CGCGGAGGGTGATGGCGGCGGAGAGAGCCACGGGGCAACTGCGTTAGACA
GCGAACCCGAGACAGAGAACGTAGTCGTAGGCATTAAAAATGATGATGCC
GATGGTAGAAGTAGCAGCAGTCCTACCGCAGCGGCAGCGGTCGGTGGGAG
CGGG
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